Wall clock time and date at job start Mon Mar 30 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47539 * 2 1 4 4 H 1.09002 * 109.46939 * 58.27795 * 3 2 1 5 5 C 1.52995 * 109.47303 * 178.27723 * 3 2 1 6 6 N 1.46904 * 109.47113 * 298.28160 * 3 2 1 7 7 C 1.47005 * 110.98758 * 275.22431 * 6 3 2 8 8 H 1.09000 * 109.48246 * 296.76965 * 7 6 3 9 9 C 1.50693 * 109.52048 * 56.85328 * 7 6 3 10 10 H 1.07996 * 120.00386 * 35.88669 * 9 7 6 11 11 C 1.37882 * 120.00220 * 215.88876 * 9 7 6 12 12 N 1.31505 * 120.00040 * 182.82827 * 11 9 7 13 13 Si 1.86807 * 119.99425 * 2.82613 * 11 9 7 14 14 H 1.48504 * 109.46812 * 93.34182 * 13 11 9 15 15 H 1.48505 * 109.46490 * 213.33753 * 13 11 9 16 16 H 1.48493 * 109.47258 * 333.33636 * 13 11 9 17 17 C 1.53048 * 109.33604 * 176.82346 * 7 6 3 18 18 N 1.46955 * 109.38358 * 58.39106 * 17 7 6 19 19 C 1.46953 * 110.88134 * 300.66725 * 18 17 7 20 20 C 1.46955 * 111.00093 * 151.41624 * 6 3 2 21 21 C 1.53008 * 109.48889 * 63.21712 * 20 6 3 22 22 C 1.53006 * 109.48874 * 303.15445 * 20 6 3 23 23 H 1.09000 * 109.47054 * 299.99969 * 1 2 3 24 24 H 1.09006 * 109.46857 * 59.99707 * 1 2 3 25 25 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 240.00031 * 2 1 3 27 27 H 1.09005 * 109.47155 * 120.00749 * 2 1 3 28 28 H 1.08993 * 109.47313 * 180.26913 * 5 3 2 29 29 H 1.09001 * 109.46920 * 300.26589 * 5 3 2 30 30 H 1.09001 * 109.47309 * 60.26617 * 5 3 2 31 31 H 0.97009 * 120.00131 * 179.97438 * 12 11 9 32 32 H 1.09003 * 109.49128 * 298.41124 * 17 7 6 33 33 H 1.09003 * 109.48819 * 178.36863 * 17 7 6 34 34 H 1.00899 * 110.99947 * 176.80112 * 18 17 7 35 35 H 1.09002 * 109.48894 * 179.28954 * 19 18 17 36 36 H 1.09000 * 109.49125 * 299.35394 * 19 18 17 37 37 H 1.08994 * 109.46748 * 170.41218 * 21 20 6 38 38 H 1.08999 * 109.46803 * 290.40608 * 21 20 6 39 39 H 1.08997 * 109.47024 * 50.40915 * 21 20 6 40 40 H 1.09000 * 109.46689 * 308.82003 * 22 20 6 41 41 H 1.09003 * 109.46917 * 68.81792 * 22 20 6 42 42 H 1.08997 * 109.46980 * 188.82428 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6518 1.9651 0.8742 5 6 3.5694 1.4426 0.0434 6 7 1.5846 2.1229 -1.2197 7 6 2.4983 1.8609 -2.3411 8 1 3.4809 2.2744 -2.1137 9 6 2.6158 0.3744 -2.5583 10 1 1.7564 -0.2626 -2.4100 11 6 3.8206 -0.1726 -2.9461 12 7 3.9094 -1.4619 -3.1895 13 14 5.3266 0.9179 -3.1259 14 1 6.0967 0.9116 -1.8561 15 1 6.1816 0.4035 -4.2259 16 1 4.8989 2.3050 -3.4387 17 6 1.9477 2.5201 -3.6079 18 7 1.7976 3.9641 -3.3806 19 6 0.8842 4.2257 -2.2594 20 6 1.4345 3.5669 -0.9923 21 6 2.7968 4.1744 -0.6516 22 6 0.4653 3.8029 0.1679 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 3.9327 2.4702 0.0482 29 1 3.9073 0.9336 0.9461 30 1 3.9578 0.9240 -0.8332 31 1 4.7569 -1.8467 -3.4628 32 1 0.9772 2.0873 -3.8507 33 1 2.6379 2.3519 -4.4347 34 1 1.4848 4.4315 -4.2183 35 1 0.7993 5.3010 -2.1028 36 1 -0.0984 3.8123 -2.4868 37 1 2.7197 5.2617 -0.6505 38 1 3.1112 3.8315 0.3341 39 1 3.5299 3.8629 -1.3956 40 1 -0.4520 3.2400 -0.0048 41 1 0.9253 3.4713 1.0988 42 1 0.2321 4.8655 0.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251715295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:06 Heat of formation + Delta-G solvation = 24.752001 kcal Electronic energy + Delta-G solvation = -20011.149505 eV Core-core repulsion = 17412.834669 eV Total energy + Delta-G solvation = -2598.314836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75673 -35.31547 -33.79344 -32.14213 -30.99947 -28.73363 -27.37379 -26.69472 -25.59549 -23.22382 -22.37922 -20.46672 -19.48924 -17.50408 -16.87592 -15.80498 -15.28359 -14.41026 -14.11502 -13.95820 -13.51941 -13.15609 -12.93844 -12.81349 -12.46306 -12.33880 -12.11431 -11.71331 -11.66997 -11.19450 -11.03046 -10.95860 -10.70475 -10.68049 -10.39384 -10.09326 -10.01259 -9.99644 -9.71345 -9.60000 -9.24231 -8.74392 -8.46093 -7.82198 -7.09033 -6.11992 -4.07446 3.23911 3.35132 3.41178 4.36410 4.75727 4.84092 5.23938 5.28964 5.59581 5.64530 5.78782 5.93995 6.01327 6.03952 6.06764 6.13688 6.17685 6.25503 6.32042 6.38747 6.43034 6.47972 6.50006 6.58368 6.62329 6.67446 6.77076 6.85080 6.87658 7.06279 7.22945 7.28093 7.33909 7.46472 7.68758 7.79660 7.93411 8.16787 8.30285 8.69551 8.96325 9.50292 10.98783 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.013326 C = 0.010674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.875863 B = 2100.631267 C = 2622.570230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.206 4.206 6 N -0.511 5.511 7 C 0.180 3.820 8 H 0.027 0.973 9 C -0.497 4.497 10 H 0.093 0.907 11 C 0.074 3.926 12 N -0.893 5.893 13 Si 0.855 3.145 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.255 1.255 17 C 0.066 3.934 18 N -0.698 5.698 19 C 0.078 3.922 20 C 0.102 3.898 21 C -0.170 4.170 22 C -0.137 4.137 23 H 0.028 0.972 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.124 0.876 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.264 0.736 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.326 0.674 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 9.112 4.490 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.173 4.173 3 C -0.002 4.002 4 H 0.072 0.928 5 C -0.264 4.264 6 N -0.236 5.236 7 C 0.073 3.927 8 H 0.044 0.956 9 C -0.535 4.535 10 H 0.110 0.890 11 C -0.128 4.128 12 N -0.530 5.530 13 Si 0.682 3.318 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.179 1.179 17 C -0.063 4.063 18 N -0.328 5.328 19 C -0.052 4.052 20 C 0.012 3.988 21 C -0.229 4.229 22 C -0.195 4.195 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.141 0.859 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.057 8.812 4.686 10.773 hybrid contribution 0.909 0.636 -0.283 1.144 sum -3.149 9.447 4.403 10.888 Atomic orbital electron populations 1.21554 0.97250 0.99295 1.00763 1.22124 0.94901 0.96356 1.03943 1.21317 0.92452 0.95211 0.91235 0.92809 1.23003 0.98586 1.01435 1.03326 1.62615 1.50352 1.05099 1.05507 1.19913 0.90845 0.95865 0.86092 0.95568 1.20961 0.97776 0.89950 1.44839 0.88965 1.24963 0.98316 0.94667 0.94856 1.69869 1.25970 1.10931 1.46278 0.87222 0.83925 0.82477 0.78128 1.20197 1.21623 1.17917 1.22404 0.99480 0.84313 1.00106 1.60676 1.51164 1.12916 1.08017 1.21873 0.93746 0.98204 0.91427 1.21044 0.93926 0.90163 0.93700 1.22595 0.99388 0.99783 1.01128 1.21896 0.99639 1.00307 0.97631 0.95274 0.91827 0.94771 0.85854 0.94745 0.93208 0.94383 0.88797 0.92581 0.95190 0.91804 0.85741 0.92011 0.95153 0.93794 0.92962 0.91258 0.92039 0.92611 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.77 37.16 0.36 -2.02 16 2 C -0.14 -2.76 5.17 -26.73 -0.14 -2.90 16 3 C 0.11 2.07 1.74 -67.72 -0.12 1.96 16 4 H 0.05 0.97 5.41 -51.93 -0.28 0.69 16 5 C -0.21 -4.24 7.63 37.15 0.28 -3.95 16 6 N -0.51 -10.16 3.55 -204.45 -0.73 -10.88 16 7 C 0.18 4.03 0.68 -68.79 -0.05 3.98 16 8 H 0.03 0.63 1.90 -51.93 -0.10 0.53 16 9 C -0.50 -12.71 5.49 -34.44 -0.19 -12.90 16 10 H 0.09 2.60 6.27 -52.49 -0.33 2.27 16 11 C 0.07 2.00 4.96 -17.82 -0.09 1.91 16 12 N -0.89 -25.67 13.96 55.43 0.77 -24.89 16 13 Si 0.86 20.78 25.48 -169.99 -4.33 16.45 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -6.09 6.50 56.52 0.37 -5.73 16 17 C 0.07 1.39 5.98 -3.77 -0.02 1.37 16 18 N -0.70 -12.41 6.39 -113.64 -0.73 -13.14 16 19 C 0.08 1.27 5.41 -3.77 -0.02 1.25 16 20 C 0.10 1.76 0.68 -131.54 -0.09 1.67 16 21 C -0.17 -2.94 6.51 37.16 0.24 -2.70 16 22 C -0.14 -1.99 8.03 37.16 0.30 -1.70 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.23 7.65 -51.93 -0.40 0.83 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.12 2.98 4.11 -51.93 -0.21 2.77 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.97 4.41 -51.93 -0.23 0.74 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.21 2.71 -51.93 -0.14 2.07 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.33 4.97 8.90 -39.29 -0.35 4.62 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.05 0.87 5.91 -51.93 -0.31 0.57 16 39 H 0.07 1.39 5.50 -51.93 -0.29 1.10 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.80 6.23 -51.93 -0.32 0.48 16 42 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -26.90 288.99 -6.95 -33.85 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.77 Total: 8.30 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 0.47 Total: -14.03 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.68 Total: -48.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.33 Total: 16.45 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.90 -6.95 -33.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251715295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.600 kcal (2) G-P(sol) polarization free energy of solvation -26.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds