Wall clock time and date at job start Mon Mar 30 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47539 * 2 1 4 4 H 1.09002 * 109.46939 * 58.27795 * 3 2 1 5 5 C 1.52995 * 109.47303 * 178.27723 * 3 2 1 6 6 N 1.46904 * 109.47113 * 298.28160 * 3 2 1 7 7 C 1.47005 * 110.98758 * 275.22431 * 6 3 2 8 8 H 1.09000 * 109.48246 * 296.76965 * 7 6 3 9 9 C 1.50693 * 109.52048 * 56.85328 * 7 6 3 10 10 H 1.07996 * 120.00386 * 35.88669 * 9 7 6 11 11 C 1.37882 * 120.00220 * 215.88876 * 9 7 6 12 12 N 1.31505 * 120.00040 * 182.82827 * 11 9 7 13 13 Si 1.86807 * 119.99425 * 2.82613 * 11 9 7 14 14 H 1.48504 * 109.46812 * 93.34182 * 13 11 9 15 15 H 1.48505 * 109.46490 * 213.33753 * 13 11 9 16 16 H 1.48493 * 109.47258 * 333.33636 * 13 11 9 17 17 C 1.53048 * 109.33604 * 176.82346 * 7 6 3 18 18 N 1.46955 * 109.38358 * 58.39106 * 17 7 6 19 19 C 1.46953 * 110.88134 * 300.66725 * 18 17 7 20 20 C 1.46955 * 111.00093 * 151.41624 * 6 3 2 21 21 C 1.53008 * 109.48889 * 63.21712 * 20 6 3 22 22 C 1.53006 * 109.48874 * 303.15445 * 20 6 3 23 23 H 1.09000 * 109.47054 * 299.99969 * 1 2 3 24 24 H 1.09006 * 109.46857 * 59.99707 * 1 2 3 25 25 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 240.00031 * 2 1 3 27 27 H 1.09005 * 109.47155 * 120.00749 * 2 1 3 28 28 H 1.08993 * 109.47313 * 180.26913 * 5 3 2 29 29 H 1.09001 * 109.46920 * 300.26589 * 5 3 2 30 30 H 1.09001 * 109.47309 * 60.26617 * 5 3 2 31 31 H 0.97009 * 120.00131 * 179.97438 * 12 11 9 32 32 H 1.09003 * 109.49128 * 298.41124 * 17 7 6 33 33 H 1.09003 * 109.48819 * 178.36863 * 17 7 6 34 34 H 1.00899 * 110.99947 * 176.80112 * 18 17 7 35 35 H 1.09002 * 109.48894 * 179.28954 * 19 18 17 36 36 H 1.09000 * 109.49125 * 299.35394 * 19 18 17 37 37 H 1.08994 * 109.46748 * 170.41218 * 21 20 6 38 38 H 1.08999 * 109.46803 * 290.40608 * 21 20 6 39 39 H 1.08997 * 109.47024 * 50.40915 * 21 20 6 40 40 H 1.09000 * 109.46689 * 308.82003 * 22 20 6 41 41 H 1.09003 * 109.46917 * 68.81792 * 22 20 6 42 42 H 1.08997 * 109.46980 * 188.82428 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6518 1.9651 0.8742 5 6 3.5694 1.4426 0.0434 6 7 1.5846 2.1229 -1.2197 7 6 2.4983 1.8609 -2.3411 8 1 3.4809 2.2744 -2.1137 9 6 2.6158 0.3744 -2.5583 10 1 1.7564 -0.2626 -2.4100 11 6 3.8206 -0.1726 -2.9461 12 7 3.9094 -1.4619 -3.1895 13 14 5.3266 0.9179 -3.1259 14 1 6.0967 0.9116 -1.8561 15 1 6.1816 0.4035 -4.2259 16 1 4.8989 2.3050 -3.4387 17 6 1.9477 2.5201 -3.6079 18 7 1.7976 3.9641 -3.3806 19 6 0.8842 4.2257 -2.2594 20 6 1.4345 3.5669 -0.9923 21 6 2.7968 4.1744 -0.6516 22 6 0.4653 3.8029 0.1679 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 3.9327 2.4702 0.0482 29 1 3.9073 0.9336 0.9461 30 1 3.9578 0.9240 -0.8332 31 1 4.7569 -1.8467 -3.4628 32 1 0.9772 2.0873 -3.8507 33 1 2.6379 2.3519 -4.4347 34 1 1.4848 4.4315 -4.2183 35 1 0.7993 5.3010 -2.1028 36 1 -0.0984 3.8123 -2.4868 37 1 2.7197 5.2617 -0.6505 38 1 3.1112 3.8315 0.3341 39 1 3.5299 3.8629 -1.3956 40 1 -0.4520 3.2400 -0.0048 41 1 0.9253 3.4713 1.0988 42 1 0.2321 4.8655 0.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251715295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:05 Heat of formation + Delta-G solvation = 5.534675 kcal Electronic energy + Delta-G solvation = -20011.982831 eV Core-core repulsion = 17412.834669 eV Total energy + Delta-G solvation = -2599.148162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28302 -36.83956 -35.47348 -33.89659 -32.66222 -30.32748 -28.97279 -28.00950 -27.19420 -24.86593 -23.95338 -22.12687 -21.02575 -19.29510 -18.59252 -17.39036 -16.78099 -16.08524 -15.90739 -15.36998 -15.00666 -14.83380 -14.67789 -14.33403 -14.08056 -13.82773 -13.63599 -13.20408 -13.10770 -12.86037 -12.56487 -12.42818 -12.26226 -12.18699 -12.05366 -11.82183 -11.68411 -11.58513 -11.42095 -11.17426 -10.84775 -10.70913 -10.34418 -9.28326 -8.68334 -8.21140 -6.16358 1.27897 1.35018 1.43857 2.34347 3.05521 3.33986 3.51956 3.97969 4.16367 4.30684 4.36277 4.47940 4.57492 4.61706 4.69965 4.73244 4.75884 4.82045 4.85259 4.87799 4.91472 4.96997 5.06974 5.13354 5.20902 5.21693 5.25775 5.31962 5.39545 5.49304 5.60555 5.64655 5.68333 5.77688 5.99542 6.12536 6.33321 6.52756 6.72633 6.86622 6.95983 7.44093 8.93449 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.013326 C = 0.010674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.875863 B = 2100.631267 C = 2622.570230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.136 4.136 3 C 0.108 3.892 4 H 0.080 0.920 5 C -0.207 4.207 6 N -0.517 5.517 7 C 0.185 3.815 8 H 0.019 0.981 9 C -0.474 4.474 10 H 0.058 0.942 11 C 0.029 3.971 12 N -0.941 5.941 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.247 1.247 17 C 0.073 3.927 18 N -0.696 5.696 19 C 0.077 3.923 20 C 0.093 3.907 21 C -0.164 4.164 22 C -0.130 4.130 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.017 0.983 33 H 0.049 0.951 34 H 0.344 0.656 35 H 0.094 0.906 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 12.005 5.933 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.000 4.000 4 H 0.098 0.902 5 C -0.265 4.265 6 N -0.241 5.241 7 C 0.077 3.923 8 H 0.037 0.963 9 C -0.512 4.512 10 H 0.076 0.924 11 C -0.169 4.169 12 N -0.582 5.582 13 Si 0.733 3.267 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.171 1.171 17 C -0.057 4.057 18 N -0.328 5.328 19 C -0.053 4.053 20 C 0.003 3.997 21 C -0.223 4.223 22 C -0.188 4.188 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.112 0.888 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.931 11.742 6.131 14.134 hybrid contribution 1.082 -0.236 -0.685 1.302 sum -3.850 11.505 5.446 13.298 Atomic orbital electron populations 1.21429 0.95474 0.99691 1.01155 1.21997 0.96493 0.96803 1.02039 1.21343 0.91783 0.94826 0.92053 0.90234 1.22992 0.99391 1.01779 1.02307 1.62506 1.49214 1.07519 1.04892 1.19707 0.91319 0.93465 0.87811 0.96348 1.21064 0.96191 0.91594 1.42401 0.92370 1.25488 1.00683 0.95322 0.95374 1.69995 1.26399 1.12664 1.49108 0.86407 0.81248 0.81335 0.77743 1.19978 1.22185 1.17100 1.22104 0.98283 0.86604 0.98739 1.60583 1.52201 1.10461 1.09515 1.21997 0.92997 1.00019 0.90273 1.21303 0.94918 0.88037 0.95428 1.22502 0.98303 1.01223 1.00263 1.21839 0.98530 1.02206 0.96201 0.92676 0.93373 0.94509 0.90275 0.94045 0.92099 0.93385 0.91949 0.92908 0.96482 0.93215 0.83825 0.88793 0.95380 0.91497 0.92571 0.94241 0.92342 0.92272 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 9.77 71.98 0.70 -3.51 16 2 C -0.14 -5.48 5.17 30.59 0.16 -5.32 16 3 C 0.11 4.05 1.74 44.91 0.08 4.13 16 4 H 0.08 2.60 5.41 -2.39 -0.01 2.59 16 5 C -0.21 -8.28 7.63 71.98 0.55 -7.73 16 6 N -0.52 -19.77 3.55 -800.76 -2.84 -22.61 16 7 C 0.18 8.23 0.68 44.16 0.03 8.26 16 8 H 0.02 0.88 1.90 -2.39 0.00 0.88 16 9 C -0.47 -25.00 5.49 25.60 0.14 -24.86 16 10 H 0.06 3.45 6.27 -2.91 -0.02 3.43 16 11 C 0.03 1.61 4.96 84.66 0.42 2.03 16 12 N -0.94 -56.53 13.96 21.45 0.30 -56.23 16 13 Si 0.91 43.92 25.48 68.60 1.75 45.67 16 14 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 16 H -0.25 -11.53 6.50 99.48 0.65 -10.89 16 17 C 0.07 3.01 5.98 86.31 0.52 3.53 16 18 N -0.70 -23.06 6.39 -513.45 -3.28 -26.35 16 19 C 0.08 2.22 5.41 86.31 0.47 2.69 16 20 C 0.09 2.89 0.68 3.54 0.00 2.89 16 21 C -0.16 -5.08 6.51 71.98 0.47 -4.61 16 22 C -0.13 -3.19 8.03 71.98 0.58 -2.61 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.82 7.65 -2.38 -0.02 1.80 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.08 3.97 4.11 -2.39 -0.01 3.96 16 27 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.06 2.26 4.41 -2.39 -0.01 2.25 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.93 2.71 -2.39 -0.01 2.92 16 31 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.34 9.53 8.90 -89.69 -0.80 8.73 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 38 H 0.06 1.67 5.91 -2.39 -0.01 1.66 16 39 H 0.04 1.46 5.50 -2.39 -0.01 1.45 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.42 6.23 -2.39 -0.01 1.40 16 42 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 Total: -1.00 -59.73 288.99 0.19 -59.54 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.15 Total: 25.10 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 4.11 Total: -25.12 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -5.82 Total: -105.18 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.75 Total: 45.67 kcal Total: -59.73 0.19 -59.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251715295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.074 kcal (2) G-P(sol) polarization free energy of solvation -59.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds