Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 H 1.08996 * 109.47261 * 306.09002 * 3 2 1 5 5 C 1.53005 * 109.46901 * 186.09196 * 3 2 1 6 6 N 1.46895 * 109.47384 * 66.09324 * 3 2 1 7 7 C 1.46958 * 111.00095 * 219.40648 * 6 3 2 8 8 H 1.09007 * 109.48643 * 296.77703 * 7 6 3 9 9 C 1.50696 * 109.48838 * 56.82234 * 7 6 3 10 10 H 1.07997 * 120.00557 * 34.36546 * 9 7 6 11 11 C 1.37876 * 119.99886 * 214.36870 * 9 7 6 12 12 N 1.31511 * 120.00129 * 183.56717 * 11 9 7 13 13 Si 1.86800 * 120.00080 * 3.56704 * 11 9 7 14 14 H 1.48498 * 109.47168 * 93.29898 * 13 11 9 15 15 H 1.48498 * 109.47428 * 213.30124 * 13 11 9 16 16 H 1.48498 * 109.47344 * 333.30132 * 13 11 9 17 17 C 1.53048 * 109.36501 * 176.81124 * 7 6 3 18 18 N 1.46961 * 109.36532 * 58.39867 * 17 7 6 19 19 C 1.46958 * 110.88177 * 300.68151 * 18 17 7 20 20 C 1.46961 * 111.00076 * 95.60395 * 6 3 2 21 21 C 1.53000 * 109.48976 * 303.15910 * 20 6 3 22 22 C 1.52999 * 109.48681 * 63.22176 * 20 6 3 23 23 H 1.09000 * 109.47118 * 55.05325 * 1 2 3 24 24 H 1.09006 * 109.47279 * 175.05001 * 1 2 3 25 25 H 1.09002 * 109.47306 * 295.04569 * 1 2 3 26 26 H 1.08997 * 109.47033 * 239.99736 * 2 1 3 27 27 H 1.09002 * 109.47037 * 119.99925 * 2 1 3 28 28 H 1.08997 * 109.47342 * 304.73608 * 5 3 2 29 29 H 1.09009 * 109.46763 * 64.73525 * 5 3 2 30 30 H 1.09000 * 109.47155 * 184.73081 * 5 3 2 31 31 H 0.97002 * 120.00217 * 179.97438 * 12 11 9 32 32 H 1.09003 * 109.49236 * 178.36595 * 17 7 6 33 33 H 1.08998 * 109.49064 * 298.41102 * 17 7 6 34 34 H 1.00897 * 111.00073 * 176.80965 * 18 17 7 35 35 H 1.08994 * 109.48824 * 179.28589 * 19 18 17 36 36 H 1.09000 * 109.48618 * 299.34828 * 19 18 17 37 37 H 1.08993 * 109.47343 * 43.75360 * 21 20 6 38 38 H 1.08998 * 109.46811 * 163.75322 * 21 20 6 39 39 H 1.08998 * 109.46763 * 283.75586 * 21 20 6 40 40 H 1.09004 * 109.47237 * 26.04955 * 22 20 6 41 41 H 1.09002 * 109.47023 * 146.04459 * 22 20 6 42 42 H 1.09002 * 109.47580 * 266.04852 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5904 1.9868 -0.8304 5 6 3.5623 1.4452 -0.1531 6 7 1.6740 2.0913 1.2661 7 6 1.2603 3.4838 1.0440 8 1 2.0996 4.0532 0.6445 9 6 0.1169 3.5182 0.0629 10 1 -0.6131 2.7223 0.0562 11 6 0.0028 4.5657 -0.8262 12 7 -1.0324 4.6323 -1.6346 13 14 1.3186 5.8904 -0.8828 14 1 2.3279 5.5419 -1.9148 15 1 0.6941 7.1944 -1.2216 16 1 1.9801 5.9881 0.4432 17 6 0.8125 4.0982 2.3723 18 7 1.9174 4.0278 3.3388 19 6 2.3312 2.6353 3.5609 20 6 2.7789 2.0209 2.2326 21 6 3.1718 0.5587 2.4531 22 6 3.9811 2.7968 1.6908 23 1 -0.3633 0.5887 -0.8424 24 1 -0.3634 -1.0239 -0.0887 25 1 -0.3634 0.4351 0.9310 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0073 0.8308 0.6296 29 1 3.8300 1.0403 -1.1292 30 1 3.9341 2.4664 -0.0689 31 1 -1.1129 5.3695 -2.2599 32 1 0.5326 5.1399 2.2153 33 1 -0.0442 3.5457 2.7581 34 1 1.6661 4.4734 4.2084 35 1 3.1584 2.6104 4.2702 36 1 1.4919 2.0659 3.9604 37 1 3.2092 0.0438 1.4932 38 1 4.1519 0.5136 2.9280 39 1 2.4343 0.0773 3.0952 40 1 3.6355 3.5685 1.0029 41 1 4.5167 3.2615 2.5187 42 1 4.6477 2.1133 1.1648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251715297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = 69.204884 kcal Electronic energy + Delta-G solvation = -19913.745228 eV Core-core repulsion = 17317.358013 eV Total energy + Delta-G solvation = -2596.387215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25356 -35.51529 -33.70209 -32.26294 -31.18736 -29.26296 -27.60307 -26.94409 -25.19432 -22.81545 -22.44422 -20.50731 -19.71252 -17.70577 -16.90227 -15.85655 -15.15228 -14.64038 -14.11445 -13.87595 -13.78175 -13.48669 -13.06720 -12.97173 -12.69562 -12.34949 -11.84609 -11.75821 -11.36482 -11.15441 -11.06139 -10.88650 -10.83949 -10.68414 -10.61761 -10.28716 -9.90917 -9.76058 -9.62811 -9.40313 -9.17545 -8.86042 -8.57621 -7.81737 -7.12007 -6.09941 -4.08830 3.26331 3.36797 3.43764 4.40227 4.72124 4.84942 5.25635 5.31647 5.54355 5.62304 5.67509 5.80236 5.89848 5.93676 5.99604 6.05988 6.10682 6.16352 6.18570 6.29304 6.35127 6.43641 6.46924 6.49831 6.57954 6.64927 6.69724 6.74354 6.84511 6.90968 6.92520 7.17501 7.27416 7.30899 7.47411 7.78188 7.94166 8.15380 8.29404 8.71254 9.04361 9.54672 11.02110 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.012626 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.840388 B = 2217.134220 C = 2728.625395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.083 3.917 4 H 0.098 0.902 5 C -0.222 4.222 6 N -0.511 5.511 7 C 0.184 3.816 8 H 0.018 0.982 9 C -0.501 4.501 10 H 0.085 0.915 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.861 3.139 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.255 1.255 17 C 0.068 3.932 18 N -0.698 5.698 19 C 0.077 3.923 20 C 0.108 3.892 21 C -0.159 4.159 22 C -0.185 4.185 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.326 0.674 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.038 0.962 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -5.941 6.766 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C -0.026 4.026 4 H 0.116 0.884 5 C -0.279 4.279 6 N -0.235 5.235 7 C 0.077 3.923 8 H 0.035 0.965 9 C -0.539 4.539 10 H 0.103 0.897 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.688 3.312 14 H -0.205 1.205 15 H -0.215 1.215 16 H -0.179 1.179 17 C -0.061 4.061 18 N -0.328 5.328 19 C -0.053 4.053 20 C 0.017 3.983 21 C -0.216 4.216 22 C -0.243 4.243 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.155 -5.952 6.348 11.926 hybrid contribution 0.504 1.035 0.095 1.155 sum 8.659 -4.917 6.444 11.861 Atomic orbital electron populations 1.21597 0.95471 0.98853 1.03367 1.21729 0.96871 0.96362 0.99936 1.21632 0.92027 0.94945 0.94004 0.88449 1.24100 0.99304 1.03644 1.00891 1.62470 1.32858 1.18879 1.09291 1.19858 0.95390 0.84648 0.92450 0.96452 1.20951 1.09425 1.08632 1.14937 0.89687 1.25004 0.95233 0.97379 0.95177 1.69891 1.28729 1.31989 1.22595 0.87075 0.82785 0.81962 0.79394 1.20488 1.21485 1.17944 1.22377 0.90600 0.99973 0.93139 1.60671 1.41652 1.15919 1.14521 1.21941 0.98406 0.89027 0.95922 1.20980 0.90536 0.93775 0.93002 1.22455 0.99870 0.96319 1.02941 1.23506 0.98846 1.00986 1.00947 0.92421 0.95257 0.91816 0.93649 0.92174 0.90565 0.94336 0.90052 0.92668 0.91821 0.95190 0.85786 0.92028 0.95300 0.89381 0.93392 0.92848 0.91586 0.94260 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.31 37.16 0.35 -2.14 16 2 C -0.11 -1.89 5.21 -26.73 -0.14 -2.03 16 3 C 0.08 1.58 2.00 -67.71 -0.14 1.45 16 4 H 0.10 2.24 6.35 -51.93 -0.33 1.92 16 5 C -0.22 -3.68 6.82 37.16 0.25 -3.43 16 6 N -0.51 -10.18 3.76 -204.49 -0.77 -10.95 16 7 C 0.18 4.21 1.20 -68.81 -0.08 4.12 16 8 H 0.02 0.44 2.98 -51.93 -0.15 0.28 16 9 C -0.50 -13.28 7.27 -34.44 -0.25 -13.53 16 10 H 0.09 2.48 7.38 -52.49 -0.39 2.09 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 13 Si 0.86 21.12 27.13 -169.99 -4.61 16.51 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -6.15 6.50 56.52 0.37 -5.79 16 17 C 0.07 1.46 5.98 -3.77 -0.02 1.44 16 18 N -0.70 -12.63 6.54 -113.64 -0.74 -13.37 16 19 C 0.08 1.28 5.19 -3.77 -0.02 1.26 16 20 C 0.11 1.84 0.66 -131.54 -0.09 1.75 16 21 C -0.16 -2.28 6.92 37.16 0.26 -2.02 16 22 C -0.19 -3.14 6.53 37.16 0.24 -2.90 16 23 H 0.06 1.19 7.92 -51.93 -0.41 0.77 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.94 5.23 -51.93 -0.27 0.67 16 28 H 0.08 1.12 3.32 -51.93 -0.17 0.95 16 29 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.08 1.43 4.32 -52.92 -0.23 1.21 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 1.42 8.06 -51.93 -0.42 1.00 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.33 5.07 8.90 -39.29 -0.35 4.72 16 35 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.09 1.26 2.83 -51.93 -0.15 1.12 16 38 H 0.05 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.05 0.76 8.02 -51.93 -0.42 0.34 16 40 H 0.07 1.32 4.49 -51.93 -0.23 1.09 16 41 H 0.04 0.63 7.75 -51.93 -0.40 0.23 16 42 H 0.07 1.10 4.51 -51.93 -0.23 0.86 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -28.04 289.77 -7.41 -35.45 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.69 Total: 7.68 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.26 Total: -14.05 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.74 Total: -49.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.61 Total: 16.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.04 -7.41 -35.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251715297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.653 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds