Wall clock time and date at job start Mon Mar 30 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 H 1.08996 * 109.47261 * 306.09002 * 3 2 1 5 5 C 1.53005 * 109.46901 * 186.09196 * 3 2 1 6 6 N 1.46895 * 109.47384 * 66.09324 * 3 2 1 7 7 C 1.46958 * 111.00095 * 219.40648 * 6 3 2 8 8 H 1.09007 * 109.48643 * 296.77703 * 7 6 3 9 9 C 1.50696 * 109.48838 * 56.82234 * 7 6 3 10 10 H 1.07997 * 120.00557 * 34.36546 * 9 7 6 11 11 C 1.37876 * 119.99886 * 214.36870 * 9 7 6 12 12 N 1.31511 * 120.00129 * 183.56717 * 11 9 7 13 13 Si 1.86800 * 120.00080 * 3.56704 * 11 9 7 14 14 H 1.48498 * 109.47168 * 93.29898 * 13 11 9 15 15 H 1.48498 * 109.47428 * 213.30124 * 13 11 9 16 16 H 1.48498 * 109.47344 * 333.30132 * 13 11 9 17 17 C 1.53048 * 109.36501 * 176.81124 * 7 6 3 18 18 N 1.46961 * 109.36532 * 58.39867 * 17 7 6 19 19 C 1.46958 * 110.88177 * 300.68151 * 18 17 7 20 20 C 1.46961 * 111.00076 * 95.60395 * 6 3 2 21 21 C 1.53000 * 109.48976 * 303.15910 * 20 6 3 22 22 C 1.52999 * 109.48681 * 63.22176 * 20 6 3 23 23 H 1.09000 * 109.47118 * 55.05325 * 1 2 3 24 24 H 1.09006 * 109.47279 * 175.05001 * 1 2 3 25 25 H 1.09002 * 109.47306 * 295.04569 * 1 2 3 26 26 H 1.08997 * 109.47033 * 239.99736 * 2 1 3 27 27 H 1.09002 * 109.47037 * 119.99925 * 2 1 3 28 28 H 1.08997 * 109.47342 * 304.73608 * 5 3 2 29 29 H 1.09009 * 109.46763 * 64.73525 * 5 3 2 30 30 H 1.09000 * 109.47155 * 184.73081 * 5 3 2 31 31 H 0.97002 * 120.00217 * 179.97438 * 12 11 9 32 32 H 1.09003 * 109.49236 * 178.36595 * 17 7 6 33 33 H 1.08998 * 109.49064 * 298.41102 * 17 7 6 34 34 H 1.00897 * 111.00073 * 176.80965 * 18 17 7 35 35 H 1.08994 * 109.48824 * 179.28589 * 19 18 17 36 36 H 1.09000 * 109.48618 * 299.34828 * 19 18 17 37 37 H 1.08993 * 109.47343 * 43.75360 * 21 20 6 38 38 H 1.08998 * 109.46811 * 163.75322 * 21 20 6 39 39 H 1.08998 * 109.46763 * 283.75586 * 21 20 6 40 40 H 1.09004 * 109.47237 * 26.04955 * 22 20 6 41 41 H 1.09002 * 109.47023 * 146.04459 * 22 20 6 42 42 H 1.09002 * 109.47580 * 266.04852 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5904 1.9868 -0.8304 5 6 3.5623 1.4452 -0.1531 6 7 1.6740 2.0913 1.2661 7 6 1.2603 3.4838 1.0440 8 1 2.0996 4.0532 0.6445 9 6 0.1169 3.5182 0.0629 10 1 -0.6131 2.7223 0.0562 11 6 0.0028 4.5657 -0.8262 12 7 -1.0324 4.6323 -1.6346 13 14 1.3186 5.8904 -0.8828 14 1 2.3279 5.5419 -1.9148 15 1 0.6941 7.1944 -1.2216 16 1 1.9801 5.9881 0.4432 17 6 0.8125 4.0982 2.3723 18 7 1.9174 4.0278 3.3388 19 6 2.3312 2.6353 3.5609 20 6 2.7789 2.0209 2.2326 21 6 3.1718 0.5587 2.4531 22 6 3.9811 2.7968 1.6908 23 1 -0.3633 0.5887 -0.8424 24 1 -0.3634 -1.0239 -0.0887 25 1 -0.3634 0.4351 0.9310 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0073 0.8308 0.6296 29 1 3.8300 1.0403 -1.1292 30 1 3.9341 2.4664 -0.0689 31 1 -1.1129 5.3695 -2.2599 32 1 0.5326 5.1399 2.2153 33 1 -0.0442 3.5457 2.7581 34 1 1.6661 4.4734 4.2084 35 1 3.1584 2.6104 4.2702 36 1 1.4919 2.0659 3.9604 37 1 3.2092 0.0438 1.4932 38 1 4.1519 0.5136 2.9280 39 1 2.4343 0.0773 3.0952 40 1 3.6355 3.5685 1.0029 41 1 4.5167 3.2615 2.5187 42 1 4.6477 2.1133 1.1648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251715297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:08 Heat of formation + Delta-G solvation = 48.780866 kcal Electronic energy + Delta-G solvation = -19914.630880 eV Core-core repulsion = 17317.358013 eV Total energy + Delta-G solvation = -2597.272867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71966 -37.01902 -35.48071 -33.92955 -32.92929 -30.65867 -29.23923 -28.23899 -26.97499 -24.37319 -23.89527 -22.19849 -21.23020 -19.26722 -18.86963 -17.47902 -16.60864 -16.10248 -16.01877 -15.28940 -15.23763 -14.99548 -14.69079 -14.56836 -14.45869 -13.85826 -13.39746 -13.14675 -12.94417 -12.90346 -12.58993 -12.46279 -12.35726 -12.20785 -11.96127 -11.79968 -11.76752 -11.41279 -11.21455 -11.13304 -10.74918 -10.70096 -10.26645 -9.31251 -8.70966 -8.26843 -6.27278 1.27475 1.32890 1.44451 2.32606 3.00423 3.32433 3.48589 3.99889 4.10516 4.30644 4.34004 4.39747 4.46782 4.59608 4.63974 4.70623 4.70968 4.79182 4.81884 4.83974 4.91914 4.95998 5.02319 5.13728 5.19882 5.20590 5.26315 5.30399 5.35625 5.41881 5.48618 5.60141 5.64589 5.72669 5.78605 6.09391 6.28006 6.50830 6.70706 6.84154 6.94403 7.39518 8.89299 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.012626 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.840388 B = 2217.134220 C = 2728.625395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.080 3.920 4 H 0.047 0.953 5 C -0.216 4.216 6 N -0.518 5.518 7 C 0.189 3.811 8 H 0.008 0.992 9 C -0.487 4.487 10 H 0.045 0.955 11 C 0.021 3.979 12 N -0.943 5.943 13 Si 0.922 3.078 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.246 1.246 17 C 0.076 3.924 18 N -0.696 5.696 19 C 0.075 3.925 20 C 0.098 3.902 21 C -0.153 4.153 22 C -0.178 4.178 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.344 0.656 35 H 0.094 0.906 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.049 0.951 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 -7.197 8.623 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C -0.029 4.029 4 H 0.065 0.935 5 C -0.273 4.273 6 N -0.242 5.242 7 C 0.081 3.919 8 H 0.025 0.975 9 C -0.526 4.526 10 H 0.064 0.936 11 C -0.176 4.176 12 N -0.584 5.584 13 Si 0.748 3.252 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.170 1.170 17 C -0.054 4.054 18 N -0.327 5.327 19 C -0.055 4.055 20 C 0.008 3.992 21 C -0.210 4.210 22 C -0.236 4.236 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.162 0.838 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.090 -7.219 8.235 15.586 hybrid contribution -0.440 1.329 -0.435 1.465 sum 10.650 -5.890 7.800 14.455 Atomic orbital electron populations 1.21491 0.96973 0.99529 1.00496 1.21716 0.95378 0.95219 1.01923 1.21583 0.93866 0.95451 0.91977 0.93477 1.24051 0.96933 1.03664 1.02625 1.62404 1.34982 1.16611 1.10251 1.19626 0.93433 0.86708 0.92114 0.97467 1.21091 1.09432 1.06816 1.15295 0.93645 1.25684 0.97065 0.99714 0.95180 1.70028 1.30971 1.33194 1.24182 0.86099 0.80277 0.79252 0.79619 1.20237 1.21442 1.17003 1.22048 0.91215 0.98639 0.93459 1.60575 1.39715 1.17457 1.14940 1.22086 0.99344 0.87704 0.96322 1.21257 0.89557 0.96150 0.92243 1.22398 1.01573 0.93690 1.03361 1.23429 0.98971 1.00521 1.00694 0.96130 0.92495 0.94025 0.91865 0.89736 0.87752 0.93272 0.91113 0.92772 0.93203 0.96649 0.83847 0.88774 0.95665 0.89315 0.90408 0.92482 0.94980 0.93204 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.31 71.98 0.67 -4.06 16 2 C -0.10 -3.39 5.21 30.59 0.16 -3.23 16 3 C 0.08 3.03 2.00 44.92 0.09 3.12 16 4 H 0.05 2.26 6.35 -2.39 -0.02 2.24 16 5 C -0.22 -6.60 6.82 71.98 0.49 -6.11 16 6 N -0.52 -20.32 3.76 -800.87 -3.01 -23.33 16 7 C 0.19 8.78 1.20 44.17 0.05 8.83 16 8 H 0.01 0.38 2.98 -2.38 -0.01 0.38 16 9 C -0.49 -27.15 7.27 25.60 0.19 -26.97 16 10 H 0.05 2.84 7.38 -2.91 -0.02 2.82 16 11 C 0.02 1.23 5.47 84.65 0.46 1.69 16 12 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 13 Si 0.92 45.05 27.13 68.60 1.86 46.91 16 14 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.25 -11.56 6.50 99.48 0.65 -10.92 16 17 C 0.08 3.27 5.98 86.31 0.52 3.79 16 18 N -0.70 -23.69 6.54 -513.43 -3.36 -27.05 16 19 C 0.07 2.23 5.19 86.31 0.45 2.68 16 20 C 0.10 3.05 0.66 3.53 0.00 3.05 16 21 C -0.15 -3.66 6.92 71.98 0.50 -3.16 16 22 C -0.18 -5.46 6.53 71.98 0.47 -4.99 16 23 H 0.02 0.87 7.92 -2.39 -0.02 0.85 16 24 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.04 1.69 7.92 -2.39 -0.02 1.67 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.08 2.36 5.23 -2.39 -0.01 2.35 16 28 H 0.10 2.60 3.32 -2.39 -0.01 2.60 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 2.35 4.32 -3.32 -0.01 2.33 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.05 2.23 8.06 -2.39 -0.02 2.21 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.34 9.82 8.90 -89.70 -0.80 9.02 16 35 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 36 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 37 H 0.09 2.11 2.83 -2.39 -0.01 2.10 16 38 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 39 H 0.06 1.35 8.02 -2.39 -0.02 1.33 16 40 H 0.03 1.21 4.49 -2.39 -0.01 1.20 16 41 H 0.05 1.41 7.75 -2.39 -0.02 1.39 16 42 H 0.09 2.44 4.51 -2.39 -0.01 2.43 16 Total: -1.00 -64.15 289.77 -0.01 -64.16 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.15 Total: 22.88 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.05 Total: -25.35 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -6.07 Total: -108.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.86 Total: 46.91 kcal Total: -64.15 -0.01 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251715297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.936 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds