Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 H 1.08993 * 109.47384 * 56.26314 * 3 2 1 5 5 C 1.53000 * 109.47512 * 176.26797 * 3 2 1 6 6 N 1.46900 * 109.46921 * 296.26617 * 3 2 1 7 7 C 1.46963 * 111.00178 * 174.96379 * 6 3 2 8 8 C 1.53046 * 109.36820 * 183.18847 * 7 6 3 9 9 H 1.09000 * 109.50453 * 61.57365 * 8 7 6 10 10 C 1.50700 * 109.49162 * 181.63020 * 8 7 6 11 11 H 1.07994 * 119.99613 * 359.88817 * 10 8 7 12 12 C 1.37873 * 120.00073 * 179.89238 * 10 8 7 13 13 N 1.31511 * 119.99975 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99857 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47137 * 90.00009 * 14 12 10 16 16 H 1.48508 * 109.46933 * 209.99962 * 14 12 10 17 17 H 1.48500 * 109.47186 * 329.99415 * 14 12 10 18 18 N 1.46959 * 109.36559 * 301.59993 * 8 7 6 19 19 C 1.46953 * 110.87868 * 59.31549 * 18 8 7 20 20 C 1.53001 * 109.48801 * 180.71429 * 19 18 8 21 21 C 1.53005 * 109.49016 * 60.65371 * 19 18 8 22 22 C 1.46955 * 111.00355 * 298.76065 * 6 3 2 23 23 H 1.09001 * 109.47984 * 55.14951 * 1 2 3 24 24 H 1.09000 * 109.47176 * 175.15195 * 1 2 3 25 25 H 1.09005 * 109.46731 * 295.14572 * 1 2 3 26 26 H 1.08999 * 109.47935 * 119.99848 * 2 1 3 27 27 H 1.09003 * 109.47477 * 240.00546 * 2 1 3 28 28 H 1.09002 * 109.46831 * 300.00161 * 5 3 2 29 29 H 1.09005 * 109.47240 * 59.99765 * 5 3 2 30 30 H 1.08997 * 109.47432 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.48409 * 303.15680 * 7 6 3 32 32 H 1.09000 * 109.48756 * 63.21536 * 7 6 3 33 33 H 0.97009 * 119.99843 * 179.97438 * 13 12 10 34 34 H 1.00900 * 111.00257 * 183.19001 * 18 8 7 35 35 H 1.09002 * 109.47423 * 179.89339 * 20 19 18 36 36 H 1.09007 * 109.47490 * 299.89679 * 20 19 18 37 37 H 1.09003 * 109.47304 * 59.88961 * 20 19 18 38 38 H 1.08996 * 109.46759 * 300.10404 * 21 19 18 39 39 H 1.09000 * 109.47239 * 60.10414 * 21 19 18 40 40 H 1.08998 * 109.46831 * 180.10537 * 21 19 18 41 41 H 1.09003 * 109.48897 * 296.78495 * 22 6 3 42 42 H 1.09006 * 109.48404 * 56.84252 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6230 1.9753 0.8545 5 6 3.5670 1.4437 0.0939 6 7 1.6252 2.1084 -1.2420 7 6 1.9943 3.5309 -1.2255 8 6 1.4761 4.2045 -2.4983 9 1 0.3887 4.1349 -2.5300 10 6 1.8875 5.6542 -2.5033 11 1 2.4597 6.0558 -1.6801 12 6 1.5334 6.4677 -3.5585 13 7 0.8369 5.9785 -4.5611 14 14 2.0440 8.2646 -3.5649 15 1 3.3663 8.4010 -4.2269 16 1 1.0348 9.0634 -4.3058 17 1 2.1367 8.7578 -2.1673 18 7 2.0449 3.5294 -3.6732 19 6 1.6759 2.1070 -3.6896 20 6 2.2982 1.4324 -4.9138 21 6 0.1528 1.9755 -3.7529 22 6 2.1941 1.4334 -2.4169 23 1 -0.3635 0.5872 -0.8433 24 1 -0.3633 -1.0240 -0.0869 25 1 -0.3633 0.4367 0.9303 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 3.8747 0.9495 1.0155 29 1 3.9840 0.9109 -0.7608 30 1 3.9303 2.4713 0.0943 31 1 1.5509 4.0115 -0.3533 32 1 3.0793 3.6245 -1.1804 33 1 0.5874 6.5510 -5.3034 34 1 1.7601 3.9868 -4.5263 35 1 2.0259 0.3770 -4.9248 36 1 1.9289 1.9123 -5.8202 37 1 3.3831 1.5273 -4.8688 38 1 -0.2899 2.4571 -2.8811 39 1 -0.2160 2.4553 -4.6595 40 1 -0.1206 0.9204 -3.7632 41 1 3.2815 1.5032 -2.3853 42 1 1.8965 0.3848 -2.4132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251945458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = -5.640469 kcal Electronic energy + Delta-G solvation = -19149.646430 eV Core-core repulsion = 16550.013677 eV Total energy + Delta-G solvation = -2599.632753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23319 -36.07535 -33.35807 -32.19127 -30.37885 -29.04186 -26.64433 -26.45189 -25.44846 -24.24019 -22.76773 -20.34856 -19.52354 -17.50648 -16.49694 -15.32089 -14.93392 -14.42351 -14.14148 -14.07589 -13.76827 -13.46924 -13.17581 -12.69049 -12.55041 -12.36300 -11.81440 -11.60142 -11.53822 -11.31340 -11.10923 -10.98286 -10.90150 -10.83784 -10.63479 -10.48187 -10.39257 -10.24174 -10.08652 -9.65518 -9.36009 -9.00938 -8.52457 -7.53527 -6.73817 -6.05890 -4.08042 3.31571 3.38099 3.41016 4.39867 4.60823 5.05020 5.16367 5.33084 5.45778 5.56610 5.65230 5.66942 5.78784 5.86887 5.91530 6.01318 6.03679 6.14017 6.19250 6.22579 6.31616 6.33283 6.34883 6.48623 6.52187 6.54284 6.58259 6.65707 6.78249 6.80834 6.90225 7.05936 7.19015 7.60029 7.80012 7.83197 7.97345 8.28028 8.73487 9.05442 9.21207 9.59342 11.04200 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.007922 C = 0.007015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.133199 B = 3533.782867 C = 3990.688143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.075 0.925 5 C -0.185 4.185 6 N -0.528 5.528 7 C 0.067 3.933 8 C 0.219 3.781 9 H 0.010 0.990 10 C -0.505 4.505 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 N -0.675 5.675 19 C 0.102 3.898 20 C -0.133 4.133 21 C -0.160 4.160 22 C 0.073 3.927 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.362 0.638 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -10.490 4.880 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.032 4.032 4 H 0.093 0.907 5 C -0.244 4.244 6 N -0.251 5.251 7 C -0.060 4.060 8 C 0.111 3.889 9 H 0.027 0.973 10 C -0.544 4.544 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.200 1.200 18 N -0.312 5.312 19 C 0.010 3.990 20 C -0.191 4.191 21 C -0.219 4.219 22 C -0.056 4.056 23 H 0.090 0.910 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.186 0.814 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.257 -10.554 4.973 11.735 hybrid contribution 0.253 1.091 -0.284 1.156 sum 1.510 -9.463 4.690 10.668 Atomic orbital electron populations 1.21662 0.95426 1.00455 1.02589 1.21583 0.96695 0.95840 1.01046 1.21713 0.92577 0.94925 0.93952 0.90669 1.22454 0.98374 1.02240 1.01314 1.62406 1.58510 1.03523 1.00696 1.22336 0.98001 0.85527 1.00172 1.19033 0.93386 0.91286 0.85174 0.97269 1.21129 1.34478 0.93384 1.05416 0.92452 1.24946 0.94358 0.98584 0.95458 1.69685 1.38603 1.36181 1.09358 0.86530 0.78250 0.84755 0.78002 1.20686 1.21360 1.20025 1.61183 1.62444 0.98492 1.09071 1.20907 0.92503 0.92818 0.92804 1.21759 1.00808 0.98723 0.97850 1.22336 0.97984 0.99526 1.02085 1.22110 0.96670 0.96634 0.90145 0.90970 0.94044 0.93486 0.92653 0.92110 0.93060 0.92542 0.92213 0.92354 0.95168 0.92752 0.81353 0.93631 0.92971 0.92748 0.91288 0.93731 0.94689 0.94881 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.85 37.15 0.37 -1.50 16 2 C -0.11 -1.48 5.20 -26.73 -0.14 -1.62 16 3 C 0.08 1.17 2.36 -67.71 -0.16 1.01 16 4 H 0.08 1.15 8.11 -51.93 -0.42 0.72 16 5 C -0.18 -2.64 8.49 37.16 0.32 -2.33 16 6 N -0.53 -9.57 3.33 -226.49 -0.75 -10.33 16 7 C 0.07 1.44 4.47 -3.77 -0.02 1.42 16 8 C 0.22 5.46 2.17 -68.81 -0.15 5.31 16 9 H 0.01 0.27 6.34 -51.93 -0.33 -0.06 16 10 C -0.50 -13.78 8.76 -34.44 -0.30 -14.08 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.85 5.35 -17.82 -0.10 1.76 16 13 N -0.90 -25.01 11.49 55.43 0.64 -24.37 16 14 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 N -0.67 -16.02 5.97 -94.12 -0.56 -16.58 16 19 C 0.10 2.01 0.94 -131.55 -0.12 1.89 16 20 C -0.13 -2.29 8.75 37.16 0.33 -1.97 16 21 C -0.16 -3.14 8.11 37.16 0.30 -2.84 16 22 C 0.07 1.30 3.53 -3.77 -0.01 1.29 16 23 H 0.07 1.09 7.58 -51.93 -0.39 0.70 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.80 6.17 -51.93 -0.32 0.48 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.82 6.46 -51.93 -0.34 0.48 16 30 H 0.06 0.94 6.59 -51.93 -0.34 0.59 16 31 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 32 H 0.03 0.67 6.60 -51.93 -0.34 0.33 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.36 9.42 6.63 -39.29 -0.26 9.16 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.49 5.94 -51.93 -0.31 1.18 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.62 6.46 -51.93 -0.34 0.28 16 42 H 0.06 1.00 6.10 -51.93 -0.32 0.68 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -26.81 310.08 -8.19 -35.01 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.47 Total: 7.03 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.31 Total: -11.65 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.68 Total: -51.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.81 -8.19 -35.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251945458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.368 kcal (2) G-P(sol) polarization free energy of solvation -26.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds