Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 H 1.08996 * 109.46884 * 305.00622 * 3 2 1 5 5 C 1.52997 * 109.47127 * 184.99870 * 3 2 1 6 6 N 1.46902 * 109.46626 * 65.00206 * 3 2 1 7 7 C 1.46955 * 111.00415 * 56.20150 * 6 3 2 8 8 C 1.53051 * 109.36663 * 183.18687 * 7 6 3 9 9 H 1.09000 * 109.48624 * 61.55988 * 8 7 6 10 10 C 1.50696 * 109.50835 * 181.61650 * 8 7 6 11 11 H 1.08001 * 119.99845 * 359.90310 * 10 8 7 12 12 C 1.37877 * 119.99868 * 179.89820 * 10 8 7 13 13 N 1.31505 * 120.00131 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99612 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47390 * 60.00555 * 14 12 10 16 16 H 1.48503 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47546 * 300.00266 * 14 12 10 18 18 N 1.46955 * 109.36448 * 301.59760 * 8 7 6 19 19 C 1.46958 * 110.88197 * 59.31916 * 18 8 7 20 20 C 1.53000 * 109.49398 * 180.71319 * 19 18 8 21 21 C 1.53002 * 109.48666 * 60.64495 * 19 18 8 22 22 C 1.46965 * 110.99769 * 179.97438 * 6 3 2 23 23 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46933 * 299.99587 * 1 2 3 25 25 H 1.09006 * 109.47013 * 60.00029 * 1 2 3 26 26 H 1.08996 * 109.46933 * 240.00413 * 2 1 3 27 27 H 1.09000 * 109.47335 * 120.00285 * 2 1 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 30 30 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 31 31 H 1.09002 * 109.48479 * 303.15154 * 7 6 3 32 32 H 1.09001 * 109.48796 * 63.21578 * 7 6 3 33 33 H 0.97001 * 119.99939 * 180.02562 * 13 12 10 34 34 H 1.00902 * 111.00366 * 183.18577 * 18 8 7 35 35 H 1.09001 * 109.47464 * 179.89377 * 20 19 18 36 36 H 1.08997 * 109.46712 * 299.89199 * 20 19 18 37 37 H 1.08999 * 109.46765 * 59.89162 * 20 19 18 38 38 H 1.08997 * 109.47364 * 300.11228 * 21 19 18 39 39 H 1.09005 * 109.46940 * 60.11575 * 21 19 18 40 40 H 1.09006 * 109.47296 * 180.10981 * 21 19 18 41 41 H 1.08996 * 109.48696 * 296.78045 * 22 6 3 42 42 H 1.09001 * 109.48421 * 56.84087 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0992 1.2553 7 6 2.1450 1.3477 2.4177 8 6 1.6530 2.0188 3.7022 9 1 0.5634 2.0054 3.7251 10 6 2.1902 1.2738 4.8968 11 1 2.8186 0.4069 4.7548 12 6 1.8797 1.6988 6.1712 13 7 1.1143 2.7541 6.3441 14 14 2.5462 0.7756 7.6520 15 1 4.0308 0.7939 7.6197 16 1 2.0698 1.4285 8.8979 17 1 2.0676 -0.6296 7.6159 18 7 2.1270 3.4094 3.7378 19 6 1.6334 4.1610 2.5754 20 6 2.1592 5.5966 2.6349 21 6 0.1035 4.1762 2.5897 22 6 2.1259 3.4897 1.2912 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9282 2.4721 -0.1252 29 1 3.8532 0.9571 -1.0571 30 1 3.9995 0.9054 0.7161 31 1 1.7704 0.3250 2.3752 32 1 3.2349 1.3368 2.4075 33 1 0.8961 3.0534 7.2406 34 1 1.8601 3.8605 4.6000 35 1 1.7945 6.1532 1.7716 36 1 1.8086 6.0742 3.5497 37 1 3.2491 5.5849 2.6256 38 1 -0.2704 3.1532 2.5482 39 1 -0.2465 4.6543 3.5046 40 1 -0.2624 4.7321 1.7263 41 1 3.2156 3.5027 1.2684 42 1 1.7374 4.0288 0.4272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251945460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -4.771325 kcal Electronic energy + Delta-G solvation = -19161.837800 eV Core-core repulsion = 16562.242736 eV Total energy + Delta-G solvation = -2599.595064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.21250 -36.14406 -33.33983 -31.89995 -30.67773 -28.96238 -26.66415 -26.44889 -25.36309 -24.22402 -22.61640 -20.85319 -19.05265 -17.50709 -16.50760 -15.54438 -14.54932 -14.49854 -14.37168 -14.07373 -13.52300 -13.49082 -13.13007 -12.74901 -12.65410 -12.25721 -11.76546 -11.55641 -11.49124 -11.27705 -11.09641 -11.00144 -10.90846 -10.86062 -10.70495 -10.44793 -10.37770 -10.17677 -10.05749 -9.62452 -9.31575 -9.02695 -8.52194 -7.53069 -6.73584 -6.05457 -4.07630 3.32885 3.37304 3.40301 4.40327 4.60613 5.09506 5.16700 5.36995 5.50280 5.58213 5.65932 5.69869 5.81350 5.88937 5.92562 6.01907 6.07436 6.16693 6.21192 6.25764 6.27574 6.33801 6.38846 6.53144 6.53836 6.55017 6.58304 6.72942 6.77649 6.83120 6.89938 7.08635 7.19154 7.60264 7.80318 7.83647 7.97830 8.28582 8.73666 9.05754 9.21366 9.59643 11.04620 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.009002 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.238272 B = 3109.564890 C = 3794.011879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.186 4.186 6 N -0.528 5.528 7 C 0.064 3.936 8 C 0.219 3.781 9 H 0.009 0.991 10 C -0.505 4.505 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 N -0.675 5.675 19 C 0.102 3.898 20 C -0.133 4.133 21 C -0.160 4.160 22 C 0.075 3.925 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.362 0.638 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 0.293 -10.788 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.030 4.030 4 H 0.089 0.911 5 C -0.244 4.244 6 N -0.252 5.252 7 C -0.063 4.063 8 C 0.111 3.889 9 H 0.027 0.973 10 C -0.544 4.544 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 N -0.312 5.312 19 C 0.010 3.990 20 C -0.191 4.191 21 C -0.219 4.219 22 C -0.053 4.053 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.186 0.814 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.532 0.258 -10.893 10.909 hybrid contribution 0.338 -0.283 1.024 1.115 sum 0.871 -0.025 -9.868 9.906 Atomic orbital electron populations 1.21641 0.95425 1.00397 1.02457 1.21634 0.96720 0.95706 1.01513 1.21702 0.92642 0.95170 0.93456 0.91095 1.22464 0.98500 1.01870 1.01612 1.62433 1.59062 1.01981 1.01713 1.22400 0.97120 0.96802 0.90018 1.19037 0.94060 0.85555 0.90249 0.97317 1.21086 1.31053 1.11913 0.90373 0.92534 1.24942 0.94461 0.94999 0.98909 1.69670 1.37003 1.24745 1.22407 0.86599 0.79365 0.79812 0.81799 1.20288 1.21392 1.20395 1.61191 1.61811 1.03980 1.04204 1.20901 0.92269 0.92762 0.93075 1.21755 1.00962 0.95832 1.00563 1.22333 0.97684 1.02416 0.99502 1.22057 0.97332 0.89057 0.96874 0.93891 0.91152 0.93649 0.92677 0.91347 0.92632 0.93058 0.92135 0.91721 0.95308 0.92696 0.81366 0.93620 0.92963 0.92738 0.91291 0.93710 0.94696 0.94762 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.80 37.16 0.36 -1.62 16 2 C -0.12 -1.67 5.10 -26.73 -0.14 -1.81 16 3 C 0.08 1.20 2.43 -67.71 -0.16 1.04 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.19 -2.66 8.50 37.16 0.32 -2.35 16 6 N -0.53 -9.60 3.51 -226.48 -0.79 -10.40 16 7 C 0.06 1.36 4.06 -3.77 -0.02 1.34 16 8 C 0.22 5.44 2.17 -68.81 -0.15 5.29 16 9 H 0.01 0.26 6.34 -51.93 -0.33 -0.07 16 10 C -0.50 -13.74 8.77 -34.44 -0.30 -14.04 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.07 1.86 5.34 -17.82 -0.10 1.77 16 13 N -0.90 -24.98 11.49 55.43 0.64 -24.35 16 14 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 N -0.67 -16.02 5.97 -94.12 -0.56 -16.58 16 19 C 0.10 2.02 0.94 -131.54 -0.12 1.90 16 20 C -0.13 -2.29 8.75 37.16 0.33 -1.96 16 21 C -0.16 -3.16 8.12 37.16 0.30 -2.86 16 22 C 0.08 1.36 3.84 -3.76 -0.01 1.35 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.15 7.75 -51.93 -0.40 0.75 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.06 6.00 -51.93 -0.31 0.75 16 28 H 0.05 0.81 6.47 -51.93 -0.34 0.47 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.95 6.56 -51.93 -0.34 0.61 16 31 H 0.06 1.36 5.95 -51.93 -0.31 1.05 16 32 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.36 9.42 6.63 -39.29 -0.26 9.15 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.49 5.94 -51.93 -0.31 1.18 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.64 6.48 -51.93 -0.34 0.31 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -26.77 309.95 -8.23 -35.00 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.47 Total: 7.40 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 0.31 Total: -11.95 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.72 Total: -51.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.77 -8.23 -35.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251945460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.232 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds