Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 H 1.08996 * 109.46884 * 305.00622 * 3 2 1 5 5 C 1.52997 * 109.47127 * 184.99870 * 3 2 1 6 6 N 1.46902 * 109.46626 * 65.00206 * 3 2 1 7 7 C 1.46955 * 111.00415 * 56.20150 * 6 3 2 8 8 C 1.53051 * 109.36663 * 183.18687 * 7 6 3 9 9 H 1.09000 * 109.48624 * 61.55988 * 8 7 6 10 10 C 1.50696 * 109.50835 * 181.61650 * 8 7 6 11 11 H 1.08001 * 119.99845 * 359.90310 * 10 8 7 12 12 C 1.37877 * 119.99868 * 179.89820 * 10 8 7 13 13 N 1.31505 * 120.00131 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99612 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47390 * 60.00555 * 14 12 10 16 16 H 1.48503 * 109.47008 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47546 * 300.00266 * 14 12 10 18 18 N 1.46955 * 109.36448 * 301.59760 * 8 7 6 19 19 C 1.46958 * 110.88197 * 59.31916 * 18 8 7 20 20 C 1.53000 * 109.49398 * 180.71319 * 19 18 8 21 21 C 1.53002 * 109.48666 * 60.64495 * 19 18 8 22 22 C 1.46965 * 110.99769 * 179.97438 * 6 3 2 23 23 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46933 * 299.99587 * 1 2 3 25 25 H 1.09006 * 109.47013 * 60.00029 * 1 2 3 26 26 H 1.08996 * 109.46933 * 240.00413 * 2 1 3 27 27 H 1.09000 * 109.47335 * 120.00285 * 2 1 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 30 30 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 31 31 H 1.09002 * 109.48479 * 303.15154 * 7 6 3 32 32 H 1.09001 * 109.48796 * 63.21578 * 7 6 3 33 33 H 0.97001 * 119.99939 * 180.02562 * 13 12 10 34 34 H 1.00902 * 111.00366 * 183.18577 * 18 8 7 35 35 H 1.09001 * 109.47464 * 179.89377 * 20 19 18 36 36 H 1.08997 * 109.46712 * 299.89199 * 20 19 18 37 37 H 1.08999 * 109.46765 * 59.89162 * 20 19 18 38 38 H 1.08997 * 109.47364 * 300.11228 * 21 19 18 39 39 H 1.09005 * 109.46940 * 60.11575 * 21 19 18 40 40 H 1.09006 * 109.47296 * 180.10981 * 21 19 18 41 41 H 1.08996 * 109.48696 * 296.78045 * 22 6 3 42 42 H 1.09001 * 109.48421 * 56.84087 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 1.6514 2.0992 1.2553 7 6 2.1450 1.3477 2.4177 8 6 1.6530 2.0188 3.7022 9 1 0.5634 2.0054 3.7251 10 6 2.1902 1.2738 4.8968 11 1 2.8186 0.4069 4.7548 12 6 1.8797 1.6988 6.1712 13 7 1.1143 2.7541 6.3441 14 14 2.5462 0.7756 7.6520 15 1 4.0308 0.7939 7.6197 16 1 2.0698 1.4285 8.8979 17 1 2.0676 -0.6296 7.6159 18 7 2.1270 3.4094 3.7378 19 6 1.6334 4.1610 2.5754 20 6 2.1592 5.5966 2.6349 21 6 0.1035 4.1762 2.5897 22 6 2.1259 3.4897 1.2912 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9282 2.4721 -0.1252 29 1 3.8532 0.9571 -1.0571 30 1 3.9995 0.9054 0.7161 31 1 1.7704 0.3250 2.3752 32 1 3.2349 1.3368 2.4075 33 1 0.8961 3.0534 7.2406 34 1 1.8601 3.8605 4.6000 35 1 1.7945 6.1532 1.7716 36 1 1.8086 6.0742 3.5497 37 1 3.2491 5.5849 2.6256 38 1 -0.2704 3.1532 2.5482 39 1 -0.2465 4.6543 3.5046 40 1 -0.2624 4.7321 1.7263 41 1 3.2156 3.5027 1.2684 42 1 1.7374 4.0288 0.4272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251945460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = -21.577812 kcal Electronic energy + Delta-G solvation = -19162.566584 eV Core-core repulsion = 16562.242736 eV Total energy + Delta-G solvation = -2600.323848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74722 -37.59693 -35.27033 -33.28860 -32.47516 -30.25319 -28.38584 -28.00242 -27.13644 -25.71705 -23.87365 -22.62022 -20.42066 -19.15033 -18.46059 -17.18342 -16.36454 -16.05025 -15.91430 -15.64771 -15.07594 -14.78870 -14.43913 -14.37602 -14.06907 -13.87636 -13.28022 -13.05232 -12.91015 -12.89606 -12.69310 -12.62570 -12.50491 -12.31724 -12.12506 -12.07037 -11.91835 -11.53338 -11.46467 -11.40483 -10.96270 -10.89567 -10.57832 -9.01343 -8.60775 -8.13373 -6.23280 1.42424 1.43811 1.51134 2.43377 3.12610 3.17658 3.90125 3.93650 4.06973 4.23917 4.33875 4.39194 4.44246 4.54999 4.61480 4.65797 4.76427 4.80887 4.83812 4.86291 4.91453 4.94758 5.01603 5.04282 5.07034 5.19619 5.20970 5.31248 5.35255 5.38449 5.43652 5.53657 5.59898 5.66537 5.88081 6.13391 6.39674 6.46029 6.70420 7.09796 7.23731 7.48062 8.94875 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.009002 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.238272 B = 3109.564890 C = 3794.011879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.077 3.923 4 H 0.091 0.909 5 C -0.179 4.179 6 N -0.532 5.532 7 C 0.084 3.916 8 C 0.222 3.778 9 H -0.029 1.029 10 C -0.530 4.530 11 H 0.050 0.950 12 C 0.024 3.976 13 N -0.919 5.919 14 Si 0.957 3.043 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.683 5.683 19 C 0.092 3.908 20 C -0.126 4.126 21 C -0.148 4.148 22 C 0.079 3.921 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.345 0.655 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.025 0.975 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 0.431 -12.670 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.109 0.891 5 C -0.238 4.238 6 N -0.256 5.256 7 C -0.044 4.044 8 C 0.114 3.886 9 H -0.011 1.011 10 C -0.569 4.569 11 H 0.069 0.931 12 C -0.175 4.175 13 N -0.559 5.559 14 Si 0.783 3.217 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.198 1.198 18 N -0.318 5.318 19 C 0.000 4.000 20 C -0.184 4.184 21 C -0.207 4.207 22 C -0.049 4.049 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.018 0.393 -12.804 12.850 hybrid contribution 0.149 -0.316 1.557 1.596 sum 1.168 0.077 -11.247 11.308 Atomic orbital electron populations 1.21585 0.95339 1.00936 1.01606 1.21633 0.96737 0.95148 1.01844 1.21861 0.93484 0.95682 0.92110 0.89123 1.22390 0.97500 1.01781 1.02086 1.62388 1.59122 1.02087 1.01978 1.22005 0.95867 0.96581 0.89972 1.18876 0.91679 0.86614 0.91465 1.01148 1.21429 1.31296 1.12307 0.91885 0.93134 1.25660 0.94676 0.95795 1.01400 1.69793 1.37639 1.25673 1.22803 0.85632 0.78665 0.78754 0.78603 1.20024 1.20922 1.19848 1.61155 1.62068 1.03730 1.04834 1.21169 0.92337 0.94119 0.92376 1.21692 1.00913 0.94154 1.01606 1.22180 0.97717 1.00976 0.99810 1.22058 0.97104 0.89013 0.96746 0.92773 0.94291 0.92062 0.89900 0.93378 0.92776 0.90384 0.94234 0.92147 0.96666 0.92747 0.83306 0.90385 0.93879 0.92720 0.93850 0.95599 0.91709 0.95211 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.80 71.98 0.71 -2.91 16 2 C -0.12 -3.06 5.10 30.60 0.16 -2.90 16 3 C 0.08 2.15 2.43 44.92 0.11 2.26 16 4 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 5 C -0.18 -4.71 8.50 71.98 0.61 -4.09 16 6 N -0.53 -18.91 3.51 -870.44 -3.05 -21.97 16 7 C 0.08 3.63 4.06 86.31 0.35 3.98 16 8 C 0.22 11.46 2.17 44.17 0.10 11.55 16 9 H -0.03 -1.68 6.34 -2.39 -0.02 -1.70 16 10 C -0.53 -29.80 8.77 25.60 0.22 -29.57 16 11 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 12 C 0.02 1.34 5.34 84.66 0.45 1.79 16 13 N -0.92 -52.54 11.49 21.45 0.25 -52.29 16 14 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 N -0.68 -33.21 5.97 -451.68 -2.69 -35.90 16 19 C 0.09 3.58 0.94 3.54 0.00 3.58 16 20 C -0.13 -4.11 8.75 71.98 0.63 -3.48 16 21 C -0.15 -5.80 8.12 71.98 0.58 -5.22 16 22 C 0.08 2.72 3.84 86.31 0.33 3.05 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 1.26 7.75 -2.39 -0.02 1.24 16 25 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.46 6.00 -2.39 -0.01 1.45 16 28 H 0.05 1.43 6.47 -2.39 -0.02 1.42 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.20 6.56 -2.38 -0.02 1.18 16 31 H 0.06 2.62 5.95 -2.39 -0.01 2.61 16 32 H 0.02 0.69 6.57 -2.39 -0.02 0.68 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.35 18.58 6.63 -89.69 -0.59 17.99 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.91 5.94 -2.39 -0.01 1.90 16 39 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.03 1.06 6.48 -2.39 -0.02 1.05 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -59.28 309.95 1.16 -58.13 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.38 Total: 27.79 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 4.25 Total: -21.97 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -5.50 Total: -110.17 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.28 1.16 -58.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251945460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.548 kcal (2) G-P(sol) polarization free energy of solvation -59.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds