Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 H 1.09005 * 109.46925 * 55.48837 * 3 2 1 5 5 C 1.52995 * 109.47345 * 175.48345 * 3 2 1 6 6 N 1.46898 * 109.47288 * 295.49168 * 3 2 1 7 7 C 1.48066 * 111.00371 * 174.62646 * 6 3 2 8 8 C 1.50748 * 112.85171 * 84.28759 * 7 6 3 9 9 C 1.54514 * 108.93658 * 92.71486 * 8 7 6 10 10 N 1.40076 * 111.51467 * 283.97448 * 9 8 7 11 11 C 1.46895 * 111.00188 * 188.14307 * 10 9 8 12 12 C 1.47696 * 114.56524 * 61.45168 * 10 9 8 13 13 H 1.09005 * 109.73236 * 38.34733 * 12 10 9 14 14 C 1.50693 * 109.73673 * 158.99923 * 12 10 9 15 15 H 1.07997 * 120.00181 * 62.52801 * 14 12 10 16 16 C 1.37882 * 119.99799 * 242.53371 * 14 12 10 17 17 N 1.31515 * 120.00076 * 181.21064 * 16 14 12 18 18 Si 1.86797 * 120.00123 * 1.20059 * 16 14 12 19 19 H 1.48502 * 109.46937 * 85.18177 * 18 16 14 20 20 H 1.48497 * 109.47539 * 205.18179 * 18 16 14 21 21 H 1.48506 * 109.47260 * 325.18555 * 18 16 14 22 22 C 1.47678 * 111.05513 * 302.32487 * 6 3 2 23 23 H 1.09000 * 109.47065 * 65.07995 * 1 2 3 24 24 H 1.09008 * 109.47058 * 185.07773 * 1 2 3 25 25 H 1.09002 * 109.47192 * 305.07880 * 1 2 3 26 26 H 1.08995 * 109.47330 * 240.00412 * 2 1 3 27 27 H 1.08999 * 109.47280 * 120.00123 * 2 1 3 28 28 H 1.08993 * 109.47338 * 186.78655 * 5 3 2 29 29 H 1.09003 * 109.47427 * 306.79077 * 5 3 2 30 30 H 1.09002 * 109.47145 * 66.78387 * 5 3 2 31 31 H 1.09002 * 108.78815 * 323.45541 * 7 6 3 32 32 H 1.08994 * 108.79027 * 205.12581 * 7 6 3 33 33 H 1.09003 * 109.55907 * 212.55172 * 8 7 6 34 34 H 1.08995 * 109.56346 * 332.87906 * 8 7 6 35 35 H 1.08998 * 109.06872 * 44.50099 * 9 8 7 36 36 H 1.09004 * 109.06989 * 163.51751 * 9 8 7 37 37 H 1.09002 * 109.46933 * 52.09348 * 11 10 9 38 38 H 1.09008 * 109.47040 * 172.09187 * 11 10 9 39 39 H 1.08998 * 109.47323 * 292.09143 * 11 10 9 40 40 H 0.97003 * 120.00210 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.04014 * 72.22423 * 22 6 3 42 42 H 1.09006 * 108.83053 * 313.46196 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6121 1.9792 0.8469 5 6 3.5657 1.4441 0.1136 6 7 1.6413 2.1029 -1.2501 7 6 2.0057 3.5379 -1.2319 8 6 3.4324 3.7849 -1.6514 9 6 3.4675 4.0620 -3.1711 10 7 3.3155 2.8830 -3.9119 11 6 3.5422 3.1272 -5.3425 12 6 2.0354 2.1799 -3.6913 13 1 1.2295 2.9066 -3.5880 14 6 1.7500 1.2655 -4.8546 15 1 2.4195 0.4473 -5.0753 16 6 0.6341 1.4735 -5.6374 17 7 0.3721 0.6614 -6.6380 18 14 -0.5057 2.9088 -5.2764 19 1 0.0105 4.1308 -5.9440 20 1 -1.8655 2.6020 -5.7882 21 1 -0.5680 3.1347 -3.8100 22 6 2.1571 1.3712 -2.4246 23 1 -0.3633 0.4330 -0.9320 24 1 -0.3633 -1.0237 0.0910 25 1 -0.3634 0.5906 0.8410 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9200 2.4677 0.2348 29 1 3.8664 0.8508 0.9772 30 1 3.9978 1.0147 -0.7903 31 1 1.8650 3.9231 -0.2220 32 1 1.3425 4.0771 -1.9083 33 1 3.8266 4.6474 -1.1140 34 1 4.0363 2.9058 -1.4268 35 1 2.6611 4.7496 -3.4264 36 1 4.4219 4.5220 -3.4273 37 1 4.4975 3.6345 -5.4776 38 1 3.5571 2.1764 -5.8755 39 1 2.7403 3.7517 -5.7361 40 1 -0.4131 0.8075 -7.1885 41 1 1.5959 0.4440 -2.5406 42 1 3.2070 1.1314 -2.2565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251960104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = 17.789329 kcal Electronic energy + Delta-G solvation = -19397.241039 eV Core-core repulsion = 16798.624278 eV Total energy + Delta-G solvation = -2598.616760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52312 -36.60630 -33.33739 -32.56539 -31.10042 -29.54724 -27.88084 -26.34100 -24.09911 -23.64222 -22.73092 -20.57143 -19.67110 -18.33993 -17.08000 -15.75448 -15.32135 -14.86032 -14.31702 -14.04912 -13.89683 -13.50249 -13.26698 -12.74755 -12.52979 -12.43245 -12.19073 -12.00303 -11.65034 -11.41403 -11.30171 -11.09051 -10.86588 -10.84624 -10.61256 -10.33665 -10.18691 -10.10621 -9.85360 -9.74535 -9.61904 -9.07453 -8.62124 -7.49502 -7.10508 -6.13728 -4.13636 3.25673 3.34946 3.40466 4.37931 4.46358 4.87483 5.09176 5.23061 5.35831 5.39835 5.49390 5.55230 5.71079 5.75228 5.83134 5.93949 6.00762 6.06988 6.14866 6.21050 6.25446 6.31552 6.32420 6.37767 6.39523 6.48800 6.56465 6.63972 6.71785 6.76667 6.79955 6.80579 7.19034 7.34617 7.53891 7.78835 7.84826 8.23436 8.29282 8.76653 8.93351 9.49755 10.98386 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.010922 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.252884 B = 2563.106659 C = 3213.613867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.085 3.915 4 H 0.070 0.930 5 C -0.192 4.192 6 N -0.542 5.542 7 C 0.061 3.939 8 C -0.159 4.159 9 C 0.078 3.922 10 N -0.566 5.566 11 C 0.057 3.943 12 C 0.180 3.820 13 H 0.028 0.972 14 C -0.502 4.502 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.893 5.893 18 Si 0.867 3.133 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.256 1.256 22 C 0.073 3.927 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.003 0.997 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.086 0.914 39 H 0.010 0.990 40 H 0.265 0.735 41 H 0.078 0.922 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 3.850 11.762 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.024 4.024 4 H 0.088 0.912 5 C -0.250 4.250 6 N -0.266 5.266 7 C -0.067 4.067 8 C -0.198 4.198 9 C -0.052 4.052 10 N -0.292 5.292 11 C -0.091 4.091 12 C 0.075 3.925 13 H 0.046 0.954 14 C -0.541 4.541 15 H 0.097 0.903 16 C -0.124 4.124 17 N -0.531 5.531 18 Si 0.695 3.305 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.181 1.181 22 C -0.054 4.054 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.445 3.498 11.741 12.726 hybrid contribution -0.364 1.469 -0.140 1.520 sum 3.081 4.967 11.601 12.990 Atomic orbital electron populations 1.21638 0.95446 1.00210 1.02610 1.21601 0.96715 0.95576 1.01592 1.21701 0.92580 0.95226 0.92853 0.91182 1.22711 0.98605 1.01727 1.02005 1.62361 1.60780 1.01191 1.02274 1.21835 0.94754 0.89907 1.00232 1.22390 0.98835 1.02236 0.96333 1.20931 0.98804 0.92032 0.93479 1.59437 1.37958 1.24019 1.07745 1.21977 0.96600 1.01745 0.88750 1.19607 0.85659 0.93273 0.93935 0.95422 1.20783 1.09316 1.13432 1.10579 0.90307 1.25025 0.97163 0.95744 0.94490 1.69879 1.27613 1.37276 1.18288 0.87001 0.80612 0.83274 0.79632 1.20593 1.21460 1.18099 1.22231 0.97702 0.97364 0.88065 0.91220 0.93854 0.93686 0.91275 0.92682 0.92338 0.93159 0.91453 0.92552 0.91807 0.92308 0.89638 0.97873 0.92926 0.94870 0.89555 0.97153 0.92523 0.90367 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.73 37.16 0.36 -1.69 16 2 C -0.12 -1.68 5.13 -26.73 -0.14 -1.82 16 3 C 0.09 1.27 2.29 -67.72 -0.16 1.11 16 4 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 5 C -0.19 -2.62 7.52 37.15 0.28 -2.34 16 6 N -0.54 -9.73 4.29 -227.76 -0.98 -10.71 16 7 C 0.06 1.02 4.94 -4.31 -0.02 1.00 16 8 C -0.16 -2.53 4.70 -27.07 -0.13 -2.66 16 9 C 0.08 1.43 4.95 -6.56 -0.03 1.40 16 10 N -0.57 -12.05 4.20 -241.36 -1.01 -13.06 16 11 C 0.06 1.21 8.78 60.06 0.53 1.74 16 12 C 0.18 4.18 1.80 -69.54 -0.13 4.06 16 13 H 0.03 0.70 3.15 -51.93 -0.16 0.53 16 14 C -0.50 -13.51 6.31 -34.44 -0.22 -13.72 16 15 H 0.08 2.33 8.02 -52.49 -0.42 1.90 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.87 21.59 27.27 -169.99 -4.64 16.96 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.26 -6.31 6.35 56.52 0.36 -5.95 16 22 C 0.07 1.51 3.73 -4.51 -0.02 1.49 16 23 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 24 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.04 5.55 -51.93 -0.29 0.75 16 31 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 32 H 0.06 1.21 6.51 -51.93 -0.34 0.87 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.40 4.13 -51.93 -0.21 1.19 16 35 H 0.00 0.07 7.59 -51.93 -0.39 -0.33 16 36 H 0.05 0.88 7.86 -51.93 -0.41 0.48 16 37 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 38 H 0.09 2.02 6.65 -51.92 -0.35 1.68 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.74 6.46 -51.93 -0.34 1.41 16 42 H 0.04 0.79 4.88 -51.93 -0.25 0.53 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -28.04 297.39 -8.28 -36.33 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.15 Total: 0.97 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 0.24 Total: -9.31 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -1.22 Total: -49.43 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.64 Total: 16.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.04 -8.28 -36.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251960104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.115 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds