Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 H 1.09005 * 109.46925 * 55.48837 * 3 2 1 5 5 C 1.52995 * 109.47345 * 175.48345 * 3 2 1 6 6 N 1.46898 * 109.47288 * 295.49168 * 3 2 1 7 7 C 1.48066 * 111.00371 * 174.62646 * 6 3 2 8 8 C 1.50748 * 112.85171 * 84.28759 * 7 6 3 9 9 C 1.54514 * 108.93658 * 92.71486 * 8 7 6 10 10 N 1.40076 * 111.51467 * 283.97448 * 9 8 7 11 11 C 1.46895 * 111.00188 * 188.14307 * 10 9 8 12 12 C 1.47696 * 114.56524 * 61.45168 * 10 9 8 13 13 H 1.09005 * 109.73236 * 38.34733 * 12 10 9 14 14 C 1.50693 * 109.73673 * 158.99923 * 12 10 9 15 15 H 1.07997 * 120.00181 * 62.52801 * 14 12 10 16 16 C 1.37882 * 119.99799 * 242.53371 * 14 12 10 17 17 N 1.31515 * 120.00076 * 181.21064 * 16 14 12 18 18 Si 1.86797 * 120.00123 * 1.20059 * 16 14 12 19 19 H 1.48502 * 109.46937 * 85.18177 * 18 16 14 20 20 H 1.48497 * 109.47539 * 205.18179 * 18 16 14 21 21 H 1.48506 * 109.47260 * 325.18555 * 18 16 14 22 22 C 1.47678 * 111.05513 * 302.32487 * 6 3 2 23 23 H 1.09000 * 109.47065 * 65.07995 * 1 2 3 24 24 H 1.09008 * 109.47058 * 185.07773 * 1 2 3 25 25 H 1.09002 * 109.47192 * 305.07880 * 1 2 3 26 26 H 1.08995 * 109.47330 * 240.00412 * 2 1 3 27 27 H 1.08999 * 109.47280 * 120.00123 * 2 1 3 28 28 H 1.08993 * 109.47338 * 186.78655 * 5 3 2 29 29 H 1.09003 * 109.47427 * 306.79077 * 5 3 2 30 30 H 1.09002 * 109.47145 * 66.78387 * 5 3 2 31 31 H 1.09002 * 108.78815 * 323.45541 * 7 6 3 32 32 H 1.08994 * 108.79027 * 205.12581 * 7 6 3 33 33 H 1.09003 * 109.55907 * 212.55172 * 8 7 6 34 34 H 1.08995 * 109.56346 * 332.87906 * 8 7 6 35 35 H 1.08998 * 109.06872 * 44.50099 * 9 8 7 36 36 H 1.09004 * 109.06989 * 163.51751 * 9 8 7 37 37 H 1.09002 * 109.46933 * 52.09348 * 11 10 9 38 38 H 1.09008 * 109.47040 * 172.09187 * 11 10 9 39 39 H 1.08998 * 109.47323 * 292.09143 * 11 10 9 40 40 H 0.97003 * 120.00210 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.04014 * 72.22423 * 22 6 3 42 42 H 1.09006 * 108.83053 * 313.46196 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6121 1.9792 0.8469 5 6 3.5657 1.4441 0.1136 6 7 1.6413 2.1029 -1.2501 7 6 2.0057 3.5379 -1.2319 8 6 3.4324 3.7849 -1.6514 9 6 3.4675 4.0620 -3.1711 10 7 3.3155 2.8830 -3.9119 11 6 3.5422 3.1272 -5.3425 12 6 2.0354 2.1799 -3.6913 13 1 1.2295 2.9066 -3.5880 14 6 1.7500 1.2655 -4.8546 15 1 2.4195 0.4473 -5.0753 16 6 0.6341 1.4735 -5.6374 17 7 0.3721 0.6614 -6.6380 18 14 -0.5057 2.9088 -5.2764 19 1 0.0105 4.1308 -5.9440 20 1 -1.8655 2.6020 -5.7882 21 1 -0.5680 3.1347 -3.8100 22 6 2.1571 1.3712 -2.4246 23 1 -0.3633 0.4330 -0.9320 24 1 -0.3633 -1.0237 0.0910 25 1 -0.3634 0.5906 0.8410 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9200 2.4677 0.2348 29 1 3.8664 0.8508 0.9772 30 1 3.9978 1.0147 -0.7903 31 1 1.8650 3.9231 -0.2220 32 1 1.3425 4.0771 -1.9083 33 1 3.8266 4.6474 -1.1140 34 1 4.0363 2.9058 -1.4268 35 1 2.6611 4.7496 -3.4264 36 1 4.4219 4.5220 -3.4273 37 1 4.4975 3.6345 -5.4776 38 1 3.5571 2.1764 -5.8755 39 1 2.7403 3.7517 -5.7361 40 1 -0.4131 0.8075 -7.1885 41 1 1.5959 0.4440 -2.5406 42 1 3.2070 1.1314 -2.2565 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251960104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = -1.427574 kcal Electronic energy + Delta-G solvation = -19398.074346 eV Core-core repulsion = 16798.624278 eV Total energy + Delta-G solvation = -2599.450068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00634 -38.08832 -35.09948 -34.13154 -32.83970 -30.78245 -29.40874 -28.07163 -25.69765 -25.27902 -24.03488 -21.90008 -21.29636 -19.86212 -19.12576 -17.20305 -16.96631 -16.30596 -15.94294 -15.85636 -15.29493 -14.92221 -14.65346 -14.43875 -14.05475 -13.84562 -13.70186 -13.48012 -13.13869 -12.98826 -12.89486 -12.63216 -12.48267 -12.18533 -11.93713 -11.85920 -11.77269 -11.66668 -11.50700 -11.31296 -11.08484 -10.92740 -10.77676 -8.88980 -8.84811 -8.33180 -6.34852 1.23657 1.29126 1.38779 2.27546 2.93890 3.10258 3.49773 3.93028 3.98572 4.10808 4.28628 4.34583 4.39066 4.53473 4.59586 4.64564 4.66664 4.69999 4.79665 4.81339 4.86398 4.93604 4.96957 4.99765 5.02240 5.09429 5.12707 5.22377 5.32886 5.38076 5.42143 5.44482 5.54452 5.57590 5.70176 6.20339 6.30239 6.43628 6.49596 6.71444 7.00921 7.30902 8.82905 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.010922 C = 0.008711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.252884 B = 2563.106659 C = 3213.613867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.084 3.916 4 H 0.091 0.909 5 C -0.184 4.184 6 N -0.555 5.555 7 C 0.059 3.941 8 C -0.150 4.150 9 C 0.069 3.931 10 N -0.568 5.568 11 C 0.062 3.938 12 C 0.185 3.815 13 H 0.016 0.984 14 C -0.494 4.494 15 H 0.039 0.961 16 C 0.030 3.970 17 N -0.938 5.938 18 Si 0.924 3.076 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.251 1.251 22 C 0.091 3.909 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.083 0.917 35 H -0.006 1.006 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.054 0.946 39 H -0.006 1.006 40 H 0.266 0.734 41 H 0.051 0.949 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 5.645 14.649 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C -0.024 4.024 4 H 0.109 0.891 5 C -0.242 4.242 6 N -0.279 5.279 7 C -0.069 4.069 8 C -0.189 4.189 9 C -0.060 4.060 10 N -0.293 5.293 11 C -0.086 4.086 12 C 0.079 3.921 13 H 0.034 0.966 14 C -0.533 4.533 15 H 0.057 0.943 16 C -0.169 4.169 17 N -0.578 5.578 18 Si 0.750 3.250 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.175 1.175 22 C -0.036 4.036 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.012 0.988 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.212 5.305 14.650 16.141 hybrid contribution -0.525 0.874 -1.009 1.434 sum 3.688 6.180 13.641 15.423 Atomic orbital electron populations 1.21589 0.95670 1.00849 1.01429 1.21618 0.96510 0.95640 1.01697 1.21827 0.93718 0.95188 0.91629 0.89122 1.22609 0.97216 1.02591 1.01819 1.62217 1.61315 1.02010 1.02404 1.21888 0.94802 0.88696 1.01496 1.22357 0.98302 1.03671 0.94524 1.21132 0.99561 0.90409 0.94946 1.59391 1.36254 1.25732 1.07893 1.21899 0.97888 1.00069 0.88695 1.19451 0.86362 0.92663 0.93584 0.96620 1.20901 1.08188 1.12700 1.11529 0.94258 1.25672 0.98736 0.98035 0.94436 1.70000 1.28596 1.39363 1.19804 0.86093 0.78840 0.80461 0.79622 1.20093 1.21124 1.17519 1.21763 0.97327 0.96133 0.88420 0.94559 0.92930 0.92028 0.93723 0.89954 0.91335 0.90984 0.93684 0.89444 0.94194 0.88772 0.89830 0.98777 0.90618 0.91308 0.92690 0.98752 0.92473 0.93105 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.73 71.98 0.70 -3.11 16 2 C -0.12 -3.14 5.13 30.59 0.16 -2.99 16 3 C 0.08 2.26 2.29 44.91 0.10 2.36 16 4 H 0.09 2.12 7.92 -2.38 -0.02 2.10 16 5 C -0.18 -4.39 7.52 71.98 0.54 -3.85 16 6 N -0.56 -19.02 4.29 -874.49 -3.75 -22.77 16 7 C 0.06 1.80 4.94 85.35 0.42 2.22 16 8 C -0.15 -4.23 4.70 30.38 0.14 -4.08 16 9 C 0.07 2.37 4.95 88.05 0.44 2.81 16 10 N -0.57 -23.78 4.20 -917.52 -3.85 -27.63 16 11 C 0.06 2.65 8.78 127.69 1.12 3.78 16 12 C 0.19 8.70 1.80 43.29 0.08 8.78 16 13 H 0.02 0.80 3.15 -2.38 -0.01 0.79 16 14 C -0.49 -27.74 6.31 25.60 0.16 -27.58 16 15 H 0.04 2.47 8.02 -2.91 -0.02 2.45 16 16 C 0.03 1.75 5.47 84.66 0.46 2.21 16 17 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 18 Si 0.92 45.57 27.27 68.60 1.87 47.44 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.25 -12.05 6.35 99.48 0.63 -11.42 16 22 C 0.09 3.79 3.73 85.43 0.32 4.11 16 23 H 0.04 1.23 7.88 -2.39 -0.02 1.21 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.41 6.40 -2.39 -0.02 1.40 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.50 5.97 -2.39 -0.01 1.49 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.29 5.55 -2.39 -0.01 1.28 16 31 H 0.09 2.15 7.72 -2.39 -0.02 2.13 16 32 H 0.04 1.42 6.51 -2.39 -0.02 1.40 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.08 2.45 4.13 -2.39 -0.01 2.44 16 35 H -0.01 -0.21 7.59 -2.39 -0.02 -0.23 16 36 H 0.08 2.27 7.86 -2.38 -0.02 2.25 16 37 H 0.07 2.41 7.90 -2.39 -0.02 2.39 16 38 H 0.05 2.66 6.65 -2.38 -0.02 2.65 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.05 2.36 6.46 -2.39 -0.02 2.35 16 42 H 0.04 1.61 4.88 -2.38 -0.01 1.60 16 Total: -1.00 -62.99 297.39 0.11 -62.88 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.90 Total: 12.92 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.65 Total: -15.34 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -7.31 Total: -107.89 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.87 Total: 47.44 kcal Total: -62.99 0.11 -62.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251960104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.449 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds