Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47076 * 308.25195 * 3 2 1 5 5 C 1.52999 * 109.46957 * 188.25065 * 3 2 1 6 6 N 1.46899 * 109.46900 * 68.25584 * 3 2 1 7 7 C 1.48073 * 110.99923 * 200.45196 * 6 3 2 8 8 C 1.53693 * 112.46719 * 192.19371 * 7 6 3 9 9 C 1.50796 * 112.09920 * 318.55416 * 8 7 6 10 10 N 1.47907 * 108.49491 * 92.55942 * 9 8 7 11 11 C 1.46894 * 110.99937 * 153.76719 * 10 9 8 12 12 C 1.40012 * 114.07140 * 280.05768 * 10 9 8 13 13 C 1.44571 * 111.00206 * 72.75345 * 6 3 2 14 14 H 1.09005 * 109.57306 * 100.53221 * 13 6 3 15 15 C 1.50696 * 109.57331 * 340.16260 * 13 6 3 16 16 H 1.08001 * 119.99920 * 23.98033 * 15 13 6 17 17 C 1.37882 * 119.99935 * 203.98445 * 15 13 6 18 18 N 1.31512 * 120.00040 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99644 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47409 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47035 * 120.00226 * 19 17 15 22 22 H 1.48497 * 109.47043 * 239.99835 * 19 17 15 23 23 H 1.09003 * 109.46707 * 300.22705 * 1 2 3 24 24 H 1.08996 * 109.47664 * 60.22795 * 1 2 3 25 25 H 1.09005 * 109.47224 * 180.23421 * 1 2 3 26 26 H 1.08998 * 109.46877 * 240.00117 * 2 1 3 27 27 H 1.09000 * 109.47186 * 120.00396 * 2 1 3 28 28 H 1.09002 * 109.46729 * 25.92477 * 5 3 2 29 29 H 1.09003 * 109.47206 * 145.92086 * 5 3 2 30 30 H 1.08996 * 109.47584 * 265.92008 * 5 3 2 31 31 H 1.08998 * 108.88551 * 71.41713 * 7 6 3 32 32 H 1.09003 * 108.88099 * 312.96190 * 7 6 3 33 33 H 1.09004 * 108.95525 * 197.87580 * 8 7 6 34 34 H 1.09005 * 108.95931 * 79.23141 * 8 7 6 35 35 H 1.09001 * 109.63047 * 332.86275 * 9 8 7 36 36 H 1.08995 * 109.80187 * 212.36182 * 9 8 7 37 37 H 1.09007 * 109.47074 * 187.97968 * 11 10 9 38 38 H 1.09001 * 109.47385 * 307.97306 * 11 10 9 39 39 H 1.08995 * 109.47773 * 67.97773 * 11 10 9 40 40 H 1.09001 * 108.96195 * 182.47273 * 12 10 9 41 41 H 1.09005 * 108.96560 * 301.13494 * 12 10 9 42 42 H 0.97002 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5612 1.9971 -0.8070 5 6 3.5559 1.4475 -0.2070 6 7 1.7194 2.0751 1.2864 7 6 1.7385 3.5512 1.1712 8 6 1.7060 4.2478 2.5409 9 6 0.7459 3.5812 3.4937 10 7 1.4908 2.5778 4.2848 11 6 0.8457 2.3475 5.5843 12 6 1.7108 1.3694 3.6127 13 6 2.5628 1.5600 2.3416 14 1 3.3674 2.2670 2.5440 15 6 3.1454 0.2353 1.9210 16 1 3.2415 -0.0037 0.8721 17 6 3.5557 -0.6715 2.8751 18 7 3.4392 -0.3803 4.1523 19 14 4.2772 -2.3137 2.3536 20 1 4.3000 -2.3960 0.8711 21 1 5.6617 -2.4347 2.8770 22 1 3.4440 -3.4157 2.8983 23 1 -0.3633 0.5174 0.8880 24 1 -0.3634 0.5103 -0.8920 25 1 -0.3634 -1.0277 0.0042 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8520 0.5469 -0.7450 29 1 3.8408 2.3264 -0.7853 30 1 4.0549 1.4726 0.7617 31 1 0.8722 3.8711 0.5921 32 1 2.6436 3.8522 0.6438 33 1 1.4044 5.2861 2.4030 34 1 2.7064 4.2258 2.9732 35 1 -0.0464 3.0884 2.9302 36 1 0.3119 4.3253 4.1614 37 1 1.4857 1.7161 6.2009 38 1 0.6864 3.3024 6.0852 39 1 -0.1135 1.8530 5.4313 40 1 2.2239 0.6796 4.2829 41 1 0.7490 0.9393 3.3332 42 1 3.7282 -1.0181 4.8235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252026613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = 72.633763 kcal Electronic energy + Delta-G solvation = -19772.193801 eV Core-core repulsion = 17175.955274 eV Total energy + Delta-G solvation = -2596.238527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.26548 -36.46640 -33.57568 -32.51721 -30.54928 -28.78947 -27.81087 -25.48799 -24.78178 -22.88116 -22.41386 -20.10984 -19.47195 -18.19372 -17.05276 -15.12407 -14.66358 -14.31308 -14.22377 -13.86790 -13.60289 -13.10005 -12.79242 -12.64029 -12.62749 -12.22008 -11.77929 -11.45734 -11.26290 -11.05252 -10.95499 -10.64129 -10.63120 -10.41200 -10.38662 -10.10113 -10.00980 -9.72826 -9.66596 -9.65231 -9.10607 -8.52268 -8.02063 -7.01239 -6.86740 -5.77100 -4.08308 3.22545 3.32071 3.34436 4.29645 4.92599 5.09692 5.28766 5.62645 5.74760 5.85792 6.01504 6.09415 6.12283 6.15828 6.23641 6.27220 6.31584 6.45279 6.47520 6.54173 6.60856 6.61236 6.64396 6.70097 6.82474 6.90566 6.99048 7.10479 7.20937 7.27188 7.40644 7.47292 7.61283 7.79749 7.93042 8.21749 8.49566 8.61543 8.89868 8.97053 8.99310 9.58502 10.88676 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.012809 C = 0.009383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.169338 B = 2185.381469 C = 2983.465052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.044 0.956 5 C -0.189 4.189 6 N -0.540 5.540 7 C 0.065 3.935 8 C -0.112 4.112 9 C 0.065 3.935 10 N -0.544 5.544 11 C 0.042 3.958 12 C 0.013 3.987 13 C 0.223 3.777 14 H 0.003 0.997 15 C -0.523 4.523 16 H 0.110 0.890 17 C 0.054 3.946 18 N -0.874 5.874 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.141 0.859 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.019 0.981 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.008 0.992 40 H 0.186 0.814 41 H -0.015 1.015 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 3.760 -2.721 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.193 4.193 3 C 0.000 4.000 4 H 0.062 0.938 5 C -0.247 4.247 6 N -0.266 5.266 7 C -0.063 4.063 8 C -0.151 4.151 9 C -0.063 4.063 10 N -0.268 5.268 11 C -0.106 4.106 12 C -0.115 4.115 13 C 0.116 3.884 14 H 0.021 0.979 15 C -0.560 4.560 16 H 0.127 0.873 17 C -0.145 4.145 18 N -0.516 5.516 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.158 0.842 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.200 0.800 41 H 0.003 0.997 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.207 3.717 -2.363 5.449 hybrid contribution 0.169 -0.731 -0.795 1.093 sum -3.038 2.986 -3.158 5.303 Atomic orbital electron populations 1.21617 0.97605 0.99246 1.00640 1.22876 0.94820 0.96850 1.04709 1.21238 0.93014 0.95278 0.90429 0.93787 1.23140 0.98982 0.98406 1.04188 1.61250 1.57443 1.02658 1.05203 1.22237 0.98352 0.89708 0.96018 1.21347 1.01328 0.97175 0.95220 1.21730 0.94993 0.94767 0.94799 1.59526 1.48043 1.14899 1.04293 1.22153 0.96554 0.99395 0.92516 1.22905 0.97558 0.90407 1.00626 1.19001 0.89103 0.93291 0.86987 0.97932 1.22720 1.37134 1.00729 0.95437 0.87258 1.25031 0.95908 0.98677 0.94875 1.68728 1.47588 1.35217 1.00022 0.86458 0.78895 0.83457 0.78943 1.19500 1.20917 1.20847 0.92087 0.95383 0.94766 0.94623 0.84231 0.93552 0.96425 0.87459 0.93267 0.96316 0.92953 0.91208 0.94438 0.93441 0.91776 0.93612 0.97398 0.80027 0.99729 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.82 37.16 0.36 -2.13 16 2 C -0.16 -3.16 4.58 -26.73 -0.12 -3.28 16 3 C 0.11 2.21 2.21 -67.72 -0.15 2.06 16 4 H 0.04 0.85 7.92 -51.93 -0.41 0.44 16 5 C -0.19 -3.80 7.64 37.16 0.28 -3.52 16 6 N -0.54 -11.59 3.42 -219.70 -0.75 -12.34 16 7 C 0.06 1.24 5.29 -2.82 -0.01 1.23 16 8 C -0.11 -2.06 5.36 -27.48 -0.15 -2.21 16 9 C 0.06 1.25 5.35 -4.37 -0.02 1.23 16 10 N -0.54 -11.87 4.32 -248.08 -1.07 -12.94 16 11 C 0.04 0.81 9.47 60.06 0.57 1.38 16 12 C 0.01 0.33 4.19 -6.75 -0.03 0.30 16 13 C 0.22 5.39 1.50 -69.48 -0.10 5.28 16 14 H 0.00 0.08 6.69 -51.93 -0.35 -0.26 16 15 C -0.52 -12.88 3.87 -34.44 -0.13 -13.01 16 16 H 0.11 2.58 2.29 -52.49 -0.12 2.46 16 17 C 0.05 1.36 5.29 -17.82 -0.09 1.27 16 18 N -0.87 -22.90 9.78 55.43 0.54 -22.36 16 19 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H 0.06 1.24 7.85 -51.93 -0.41 0.83 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 27 H 0.14 3.24 4.26 -53.35 -0.23 3.01 16 28 H 0.05 0.89 7.27 -51.93 -0.38 0.51 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 2.45 4.52 -51.93 -0.23 2.21 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.02 0.36 7.59 -51.93 -0.39 -0.04 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.41 7.23 -51.93 -0.38 1.04 16 35 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 36 H 0.05 0.81 7.68 -51.93 -0.40 0.41 16 37 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 38 H 0.05 0.75 7.87 -51.93 -0.41 0.35 16 39 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.19 4.90 3.62 -89.53 -0.32 4.57 16 41 H -0.02 -0.41 8.07 -51.93 -0.42 -0.83 16 42 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -25.32 296.53 -8.77 -34.10 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.34 Total: 5.63 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 0.40 Total: -11.42 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -1.28 Total: -47.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.32 -8.77 -34.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252026613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.730 kcal (2) G-P(sol) polarization free energy of solvation -25.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds