Wall clock time and date at job start Mon Mar 30 2020 03:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47076 * 308.25195 * 3 2 1 5 5 C 1.52999 * 109.46957 * 188.25065 * 3 2 1 6 6 N 1.46899 * 109.46900 * 68.25584 * 3 2 1 7 7 C 1.48073 * 110.99923 * 200.45196 * 6 3 2 8 8 C 1.53693 * 112.46719 * 192.19371 * 7 6 3 9 9 C 1.50796 * 112.09920 * 318.55416 * 8 7 6 10 10 N 1.47907 * 108.49491 * 92.55942 * 9 8 7 11 11 C 1.46894 * 110.99937 * 153.76719 * 10 9 8 12 12 C 1.40012 * 114.07140 * 280.05768 * 10 9 8 13 13 C 1.44571 * 111.00206 * 72.75345 * 6 3 2 14 14 H 1.09005 * 109.57306 * 100.53221 * 13 6 3 15 15 C 1.50696 * 109.57331 * 340.16260 * 13 6 3 16 16 H 1.08001 * 119.99920 * 23.98033 * 15 13 6 17 17 C 1.37882 * 119.99935 * 203.98445 * 15 13 6 18 18 N 1.31512 * 120.00040 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99644 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47409 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47035 * 120.00226 * 19 17 15 22 22 H 1.48497 * 109.47043 * 239.99835 * 19 17 15 23 23 H 1.09003 * 109.46707 * 300.22705 * 1 2 3 24 24 H 1.08996 * 109.47664 * 60.22795 * 1 2 3 25 25 H 1.09005 * 109.47224 * 180.23421 * 1 2 3 26 26 H 1.08998 * 109.46877 * 240.00117 * 2 1 3 27 27 H 1.09000 * 109.47186 * 120.00396 * 2 1 3 28 28 H 1.09002 * 109.46729 * 25.92477 * 5 3 2 29 29 H 1.09003 * 109.47206 * 145.92086 * 5 3 2 30 30 H 1.08996 * 109.47584 * 265.92008 * 5 3 2 31 31 H 1.08998 * 108.88551 * 71.41713 * 7 6 3 32 32 H 1.09003 * 108.88099 * 312.96190 * 7 6 3 33 33 H 1.09004 * 108.95525 * 197.87580 * 8 7 6 34 34 H 1.09005 * 108.95931 * 79.23141 * 8 7 6 35 35 H 1.09001 * 109.63047 * 332.86275 * 9 8 7 36 36 H 1.08995 * 109.80187 * 212.36182 * 9 8 7 37 37 H 1.09007 * 109.47074 * 187.97968 * 11 10 9 38 38 H 1.09001 * 109.47385 * 307.97306 * 11 10 9 39 39 H 1.08995 * 109.47773 * 67.97773 * 11 10 9 40 40 H 1.09001 * 108.96195 * 182.47273 * 12 10 9 41 41 H 1.09005 * 108.96560 * 301.13494 * 12 10 9 42 42 H 0.97002 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5612 1.9971 -0.8070 5 6 3.5559 1.4475 -0.2070 6 7 1.7194 2.0751 1.2864 7 6 1.7385 3.5512 1.1712 8 6 1.7060 4.2478 2.5409 9 6 0.7459 3.5812 3.4937 10 7 1.4908 2.5778 4.2848 11 6 0.8457 2.3475 5.5843 12 6 1.7108 1.3694 3.6127 13 6 2.5628 1.5600 2.3416 14 1 3.3674 2.2670 2.5440 15 6 3.1454 0.2353 1.9210 16 1 3.2415 -0.0037 0.8721 17 6 3.5557 -0.6715 2.8751 18 7 3.4392 -0.3803 4.1523 19 14 4.2772 -2.3137 2.3536 20 1 4.3000 -2.3960 0.8711 21 1 5.6617 -2.4347 2.8770 22 1 3.4440 -3.4157 2.8983 23 1 -0.3633 0.5174 0.8880 24 1 -0.3634 0.5103 -0.8920 25 1 -0.3634 -1.0277 0.0042 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8520 0.5469 -0.7450 29 1 3.8408 2.3264 -0.7853 30 1 4.0549 1.4726 0.7617 31 1 0.8722 3.8711 0.5921 32 1 2.6436 3.8522 0.6438 33 1 1.4044 5.2861 2.4030 34 1 2.7064 4.2258 2.9732 35 1 -0.0464 3.0884 2.9302 36 1 0.3119 4.3253 4.1614 37 1 1.4857 1.7161 6.2009 38 1 0.6864 3.3024 6.0852 39 1 -0.1135 1.8530 5.4313 40 1 2.2239 0.6796 4.2829 41 1 0.7490 0.9393 3.3332 42 1 3.7282 -1.0181 4.8235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252026613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:03 Heat of formation + Delta-G solvation = 57.478785 kcal Electronic energy + Delta-G solvation = -19772.850970 eV Core-core repulsion = 17175.955274 eV Total energy + Delta-G solvation = -2596.895696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97373 -38.12919 -35.34248 -34.19718 -32.21467 -30.43917 -29.54822 -27.24371 -26.40927 -24.55466 -24.07062 -21.83209 -21.08113 -19.93072 -18.88472 -16.89210 -16.38591 -16.03582 -15.86927 -15.55305 -15.25093 -14.73678 -14.45689 -14.30757 -14.20411 -13.83589 -13.44465 -13.08549 -12.89870 -12.79019 -12.63481 -12.34677 -12.23610 -12.07783 -11.99568 -11.69195 -11.59727 -11.47935 -11.36941 -11.28179 -10.90243 -10.41502 -9.83819 -8.76424 -8.58501 -7.68417 -6.03144 1.44353 1.48907 1.57353 2.45002 3.09342 3.49067 3.57920 4.12444 4.18157 4.31758 4.44985 4.54711 4.58459 4.62122 4.68379 4.74628 4.79427 4.89688 4.92259 4.97135 5.04058 5.05867 5.09084 5.13254 5.18015 5.28030 5.36125 5.44812 5.46607 5.57763 5.65688 5.70531 5.78152 6.01551 6.09451 6.51920 6.67598 6.87689 6.99584 7.11521 7.16740 7.63759 8.97220 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.012809 C = 0.009383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.169338 B = 2185.381469 C = 2983.465052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.156 4.156 3 C 0.106 3.894 4 H 0.063 0.937 5 C -0.182 4.182 6 N -0.547 5.547 7 C 0.061 3.939 8 C -0.109 4.109 9 C 0.068 3.932 10 N -0.562 5.562 11 C 0.044 3.956 12 C 0.028 3.972 13 C 0.235 3.765 14 H -0.033 1.033 15 C -0.522 4.522 16 H 0.121 0.879 17 C 0.007 3.993 18 N -0.901 5.901 19 Si 0.949 3.051 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.167 0.833 41 H -0.047 1.047 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 4.561 -4.180 7.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.193 4.193 3 C -0.003 4.003 4 H 0.081 0.919 5 C -0.240 4.240 6 N -0.273 5.273 7 C -0.067 4.067 8 C -0.147 4.147 9 C -0.059 4.059 10 N -0.286 5.286 11 C -0.104 4.104 12 C -0.102 4.102 13 C 0.128 3.872 14 H -0.016 1.016 15 C -0.560 4.560 16 H 0.138 0.862 17 C -0.189 4.189 18 N -0.544 5.544 19 Si 0.776 3.224 20 H -0.185 1.185 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.181 0.819 41 H -0.029 1.029 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.916 4.531 -3.835 7.111 hybrid contribution 0.361 -0.908 -0.357 1.040 sum -3.555 3.623 -4.192 6.583 Atomic orbital electron populations 1.21508 0.96362 0.99953 1.00441 1.22735 0.95995 0.96715 1.03843 1.21342 0.93172 0.95475 0.90277 0.91910 1.22963 0.98672 0.99605 1.02731 1.61201 1.56524 1.04324 1.05202 1.22362 0.99232 0.88188 0.96894 1.21346 0.99788 0.99136 0.94398 1.21767 0.94540 0.94439 0.95133 1.59485 1.49510 1.14213 1.05356 1.22172 0.95906 1.00906 0.91366 1.22619 0.95535 0.91387 1.00632 1.18742 0.88222 0.92426 0.87858 1.01557 1.23052 1.36163 1.00748 0.95994 0.86234 1.25695 0.96768 1.01494 0.94952 1.68912 1.48733 1.36028 1.00770 0.85603 0.77763 0.80074 0.78978 1.18459 1.21248 1.21121 0.94439 0.93271 0.93689 0.92933 0.87355 0.92815 0.94691 0.90587 0.91189 0.96249 0.89193 0.93593 0.95865 0.90550 0.92949 0.90481 0.97470 0.81915 1.02884 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.82 71.98 0.71 -3.75 16 2 C -0.16 -6.08 4.58 30.59 0.14 -5.94 16 3 C 0.11 4.11 2.21 44.91 0.10 4.21 16 4 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 5 C -0.18 -7.05 7.64 71.98 0.55 -6.50 16 6 N -0.55 -23.20 3.42 -849.01 -2.90 -26.10 16 7 C 0.06 2.22 5.29 86.31 0.46 2.68 16 8 C -0.11 -3.80 5.36 30.11 0.16 -3.64 16 9 C 0.07 2.54 5.35 85.39 0.46 3.00 16 10 N -0.56 -24.66 4.32 -938.79 -4.06 -28.72 16 11 C 0.04 1.68 9.47 127.69 1.21 2.89 16 12 C 0.03 1.40 4.19 87.96 0.37 1.77 16 13 C 0.24 11.60 1.50 45.01 0.07 11.67 16 14 H -0.03 -1.84 6.69 -2.38 -0.02 -1.85 16 15 C -0.52 -26.15 3.87 25.60 0.10 -26.05 16 16 H 0.12 5.63 2.29 -2.91 -0.01 5.62 16 17 C 0.01 0.34 5.29 84.66 0.45 0.78 16 18 N -0.90 -48.91 9.78 21.45 0.21 -48.70 16 19 Si 0.95 41.35 29.54 68.60 2.03 43.38 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 27 H 0.11 5.00 4.26 -3.72 -0.02 4.98 16 28 H 0.05 1.97 7.27 -2.39 -0.02 1.95 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.08 3.47 4.52 -2.39 -0.01 3.46 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.02 0.70 7.59 -2.39 -0.02 0.68 16 33 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.05 1.83 7.23 -2.38 -0.02 1.82 16 35 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 36 H 0.08 2.39 7.68 -2.39 -0.02 2.37 16 37 H 0.05 2.07 8.06 -2.38 -0.02 2.05 16 38 H 0.08 2.40 7.87 -2.39 -0.02 2.38 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.17 9.16 3.62 -76.64 -0.28 8.88 16 41 H -0.05 -2.60 8.07 -2.38 -0.02 -2.62 16 42 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -55.55 296.53 0.75 -54.80 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.70 Total: 24.21 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.76 Total: -18.87 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -6.75 Total: -103.52 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -55.55 0.75 -54.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252026613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.281 kcal (2) G-P(sol) polarization free energy of solvation -55.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds