Wall clock time and date at job start Mon Mar 30 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47614 * 2 1 4 4 H 1.08999 * 109.46869 * 54.99295 * 3 2 1 5 5 C 1.52999 * 109.47269 * 175.00150 * 3 2 1 6 6 N 1.46908 * 109.46562 * 295.00155 * 3 2 1 7 7 C 1.48065 * 110.99826 * 308.41118 * 6 3 2 8 8 C 1.53691 * 112.46785 * 192.20144 * 7 6 3 9 9 C 1.50798 * 112.10514 * 318.55666 * 8 7 6 10 10 N 1.47910 * 108.50058 * 92.54627 * 9 8 7 11 11 C 1.46903 * 110.99775 * 153.79109 * 10 9 8 12 12 C 1.40005 * 114.06994 * 280.08205 * 10 9 8 13 13 C 1.44576 * 110.99307 * 180.72877 * 6 3 2 14 14 H 1.08998 * 109.57394 * 100.53753 * 13 6 3 15 15 C 1.50701 * 109.68335 * 340.21751 * 13 6 3 16 16 H 1.08001 * 119.99515 * 355.01805 * 15 13 6 17 17 C 1.37873 * 119.99965 * 175.01953 * 15 13 6 18 18 N 1.31515 * 120.00053 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99687 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46968 * 120.00084 * 19 17 15 22 22 H 1.48497 * 109.47053 * 239.99660 * 19 17 15 23 23 H 1.09000 * 109.47211 * 300.00495 * 1 2 3 24 24 H 1.09004 * 109.46860 * 59.99670 * 1 2 3 25 25 H 1.08995 * 109.47483 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47211 * 239.99505 * 2 1 3 27 27 H 1.09003 * 109.47326 * 120.00078 * 2 1 3 28 28 H 1.09003 * 109.46591 * 180.02562 * 5 3 2 29 29 H 1.09003 * 109.46840 * 299.99220 * 5 3 2 30 30 H 1.08995 * 109.47169 * 59.99874 * 5 3 2 31 31 H 1.08991 * 108.88164 * 312.97517 * 7 6 3 32 32 H 1.09002 * 108.87746 * 71.53504 * 7 6 3 33 33 H 1.09000 * 108.95806 * 79.22943 * 8 7 6 34 34 H 1.09003 * 108.95740 * 197.96860 * 8 7 6 35 35 H 1.09002 * 109.63299 * 332.84688 * 9 8 7 36 36 H 1.09004 * 109.63872 * 212.25381 * 9 8 7 37 37 H 1.09009 * 109.47079 * 187.97260 * 11 10 9 38 38 H 1.09003 * 109.47556 * 307.97041 * 11 10 9 39 39 H 1.09001 * 109.46987 * 67.97271 * 11 10 9 40 40 H 1.08995 * 108.96212 * 182.47523 * 12 10 9 41 41 H 1.09001 * 108.95963 * 301.13374 * 12 10 9 42 42 H 0.97002 * 119.99562 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5649 1.4442 0.1257 6 7 1.6514 2.0992 -1.2553 7 6 2.0525 1.2860 -2.4259 8 6 1.9384 2.0624 -3.7473 9 6 0.6849 2.8985 -3.8078 10 7 1.0012 4.2552 -3.3106 11 6 0.0897 5.2528 -3.8868 12 6 1.0393 4.3573 -1.9148 13 6 2.1326 3.4619 -1.2975 14 1 3.0338 3.5122 -1.9086 15 6 2.4428 3.9342 0.0995 16 1 2.2171 3.3022 0.9457 17 6 3.0147 5.1730 0.2973 18 7 3.2900 5.9423 -0.7332 19 14 3.3999 5.7580 2.0291 20 1 2.9975 4.7139 3.0054 21 1 4.8572 6.0158 2.1518 22 1 2.6508 7.0098 2.3067 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9282 2.4719 0.1261 29 1 3.8532 0.9570 1.0571 30 1 3.9995 0.9052 -0.7161 31 1 3.0853 0.9636 -2.2942 32 1 1.4125 0.4053 -2.4794 33 1 2.8049 2.7156 -3.8502 34 1 1.9297 1.3533 -4.5751 35 1 -0.0856 2.4493 -3.1812 36 1 0.3340 2.9587 -4.8381 37 1 0.4296 6.2532 -3.6186 38 1 0.0791 5.1514 -4.9720 39 1 -0.9158 5.0941 -3.4972 40 1 1.2342 5.3940 -1.6407 41 1 0.0705 4.0622 -1.5115 42 1 3.6921 6.8140 -0.5939 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252026614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:07 Heat of formation + Delta-G solvation = 24.915281 kcal Electronic energy + Delta-G solvation = -19451.036651 eV Core-core repulsion = 16852.728895 eV Total energy + Delta-G solvation = -2598.307756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.03935 -36.45346 -33.28611 -32.57393 -30.96180 -28.87245 -27.45979 -25.47774 -25.03509 -22.97760 -22.41201 -20.58537 -19.60091 -18.14141 -16.09992 -15.87411 -14.66202 -14.42046 -14.27442 -14.07764 -13.96859 -13.18582 -12.93094 -12.56145 -12.51494 -12.29904 -11.82885 -11.55725 -11.40718 -11.10381 -10.95991 -10.83872 -10.66512 -10.59505 -10.48464 -10.33617 -10.06512 -9.98616 -9.78174 -9.68373 -9.29838 -8.57940 -8.45008 -7.15771 -6.86279 -6.00436 -4.03368 3.28150 3.37333 3.40035 4.40598 4.93633 5.02456 5.32230 5.52109 5.57732 5.73308 5.79188 5.83501 5.96832 6.03521 6.08169 6.21434 6.24058 6.32074 6.34625 6.42305 6.46438 6.48000 6.52400 6.56049 6.67861 6.74454 6.83229 6.84771 7.00353 7.05392 7.11311 7.42454 7.48081 7.81649 7.91321 8.09198 8.15510 8.44671 8.49627 8.84422 9.07148 9.59281 11.05530 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.012506 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.433693 B = 2238.459868 C = 3363.378265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.099 3.901 4 H 0.092 0.908 5 C -0.189 4.189 6 N -0.541 5.541 7 C 0.061 3.939 8 C -0.117 4.117 9 C 0.073 3.927 10 N -0.548 5.548 11 C 0.037 3.963 12 C 0.088 3.912 13 C 0.229 3.771 14 H 0.021 0.979 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.063 3.937 18 N -0.877 5.877 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.011 0.989 40 H 0.089 0.911 41 H -0.005 1.005 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -7.195 -2.926 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.010 4.010 4 H 0.109 0.891 5 C -0.247 4.247 6 N -0.266 5.266 7 C -0.067 4.067 8 C -0.155 4.155 9 C -0.054 4.054 10 N -0.272 5.272 11 C -0.111 4.111 12 C -0.041 4.041 13 C 0.122 3.878 14 H 0.039 0.961 15 C -0.562 4.562 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.713 3.287 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.107 0.893 41 H 0.013 0.987 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.797 -6.879 -3.134 8.460 hybrid contribution 0.358 0.237 1.179 1.255 sum -3.440 -6.642 -1.955 7.731 Atomic orbital electron populations 1.21625 0.96058 0.99447 1.02475 1.21754 0.96126 0.97727 1.00480 1.21568 0.93240 0.91823 0.94330 0.89060 1.22727 0.98207 1.05012 0.98760 1.61082 1.61995 1.03662 0.99829 1.22309 0.97567 0.95919 0.90863 1.21397 0.99748 0.98262 0.96080 1.21647 0.96529 0.89462 0.97811 1.59349 1.51371 1.03717 1.12793 1.22235 0.93685 0.96846 0.98379 1.21133 0.96910 1.03030 0.83075 1.18918 0.91810 0.81669 0.95442 0.96135 1.21709 1.40034 1.01907 0.92552 0.90640 1.24991 0.95795 0.96789 0.96438 1.70014 1.42235 1.10196 1.29060 0.86638 0.77921 0.78837 0.85255 1.19725 1.21163 1.21122 0.93354 0.91774 0.94630 0.92799 0.93107 0.88136 0.94688 0.94770 0.95745 0.92807 0.90979 0.92795 0.94104 0.92999 0.91937 0.93040 0.97099 0.89340 0.98696 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.78 37.16 0.36 -1.75 16 2 C -0.12 -1.99 4.96 -26.73 -0.13 -2.12 16 3 C 0.10 1.93 1.88 -67.71 -0.13 1.80 16 4 H 0.09 1.97 5.80 -51.93 -0.30 1.67 16 5 C -0.19 -3.74 8.29 37.16 0.31 -3.43 16 6 N -0.54 -11.21 3.42 -219.70 -0.75 -11.96 16 7 C 0.06 1.13 4.31 -2.82 -0.01 1.11 16 8 C -0.12 -2.08 5.36 -27.48 -0.15 -2.22 16 9 C 0.07 1.33 5.34 -4.37 -0.02 1.31 16 10 N -0.55 -11.55 4.32 -248.07 -1.07 -12.62 16 11 C 0.04 0.67 9.47 60.07 0.57 1.23 16 12 C 0.09 2.11 4.29 -6.75 -0.03 2.08 16 13 C 0.23 5.54 1.26 -69.48 -0.09 5.45 16 14 H 0.02 0.58 6.93 -51.93 -0.36 0.22 16 15 C -0.52 -13.44 5.47 -34.44 -0.19 -13.63 16 16 H 0.08 1.92 4.53 -52.49 -0.24 1.68 16 17 C 0.06 1.66 5.18 -17.82 -0.09 1.57 16 18 N -0.88 -24.40 11.84 55.43 0.66 -23.75 16 19 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.85 6.27 -51.93 -0.33 0.52 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.33 5.36 -51.93 -0.28 2.05 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.64 6.40 -51.93 -0.33 0.31 16 31 H 0.02 0.46 6.11 -51.93 -0.32 0.14 16 32 H 0.05 0.91 6.76 -51.93 -0.35 0.56 16 33 H 0.07 1.46 7.23 -51.93 -0.38 1.09 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 36 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 37 H 0.06 1.16 8.06 -51.92 -0.42 0.74 16 38 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 41 H -0.01 -0.12 8.07 -51.93 -0.42 -0.54 16 42 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -26.66 301.70 -8.55 -35.21 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.31 Total: 1.51 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 0.40 Total: -8.60 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.17 Total: -48.34 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.66 -8.55 -35.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252026614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -26.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds