Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 H 1.09001 * 109.46796 * 304.02325 * 3 2 1 5 5 C 1.50699 * 109.47428 * 184.02038 * 3 2 1 6 6 H 1.08000 * 120.00096 * 240.00022 * 5 3 2 7 7 C 1.37872 * 119.99838 * 59.99952 * 5 3 2 8 8 N 1.31512 * 120.00335 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99887 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46841 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46962 * 120.00017 * 9 7 5 12 12 H 1.48503 * 109.47102 * 239.99771 * 9 7 5 13 13 N 1.46908 * 109.47291 * 64.01787 * 3 2 1 14 14 C 1.46901 * 110.99542 * 37.07293 * 13 3 2 15 15 C 1.46902 * 110.99926 * 273.12383 * 13 3 2 16 16 C 1.53002 * 109.46764 * 287.90175 * 15 13 3 17 17 H 1.08998 * 110.41899 * 59.82696 * 16 15 13 18 18 C 1.54907 * 110.37019 * 182.13827 * 16 15 13 19 19 C 1.55137 * 101.68973 * 155.88190 * 18 16 15 20 20 C 1.54374 * 102.99489 * 324.39734 * 19 18 16 21 21 N 1.47443 * 107.25137 * 22.22633 * 20 19 18 22 22 C 1.46893 * 110.99748 * 123.29299 * 21 20 19 23 23 H 1.09006 * 109.46809 * 285.74619 * 1 2 3 24 24 H 1.08999 * 109.47028 * 45.75021 * 1 2 3 25 25 H 1.09002 * 109.47192 * 165.75349 * 1 2 3 26 26 H 1.08995 * 109.47203 * 240.00026 * 2 1 3 27 27 H 1.09004 * 109.47299 * 120.00093 * 2 1 3 28 28 H 0.97001 * 120.00327 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47392 * 289.73603 * 14 13 3 30 30 H 1.09003 * 109.47186 * 49.73989 * 14 13 3 31 31 H 1.09001 * 109.46682 * 169.73655 * 14 13 3 32 32 H 1.08997 * 109.46722 * 167.90794 * 15 13 3 33 33 H 1.08994 * 109.47353 * 47.90353 * 15 13 3 34 34 H 1.09004 * 110.99223 * 273.99350 * 18 16 15 35 35 H 1.09001 * 110.99124 * 37.77241 * 18 16 15 36 36 H 1.09005 * 110.70500 * 82.74373 * 19 18 16 37 37 H 1.08997 * 110.71028 * 205.98706 * 19 18 16 38 38 H 1.09005 * 109.84785 * 262.82978 * 20 19 18 39 39 H 1.08999 * 110.04309 * 141.72952 * 20 19 18 40 40 H 1.09002 * 109.47036 * 302.46422 * 22 21 20 41 41 H 1.09002 * 109.47520 * 62.46755 * 22 21 20 42 42 H 1.09006 * 109.46918 * 182.46597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6190 1.9767 -0.8518 5 6 3.5437 1.4437 -0.0996 6 1 4.1365 1.8927 0.6836 7 6 4.1628 0.8715 -1.1906 8 7 3.4410 0.3252 -2.1447 9 14 6.0268 0.8724 -1.3138 10 1 6.6013 1.5444 -0.1207 11 1 6.5191 -0.5271 -1.3794 12 1 6.4415 1.6010 -2.5395 13 7 1.6312 2.1065 1.2451 14 6 1.6909 1.1772 2.3813 15 6 0.2904 2.6920 1.1137 16 6 0.3579 3.9224 0.2068 17 1 0.7258 3.6467 -0.7815 18 6 -1.0364 4.5883 0.0968 19 6 -0.6598 6.0469 -0.2738 20 6 0.6422 6.2820 0.5217 21 7 1.2246 4.9582 0.8082 22 6 2.5958 4.8630 0.2901 23 1 -0.3633 0.2789 0.9892 24 1 -0.3633 0.7171 -0.7361 25 1 -0.3634 -0.9961 -0.2529 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8766 -0.0777 -2.9121 29 1 0.8969 0.4365 2.2869 30 1 2.6579 0.6743 2.3890 31 1 1.5622 1.7315 3.3110 32 1 -0.0759 2.9854 2.0975 33 1 -0.3862 1.9565 0.6785 34 1 -1.6290 4.1255 -0.6924 35 1 -1.5632 4.5513 1.0504 36 1 -0.4785 6.1379 -1.3448 37 1 -1.4382 6.7393 0.0467 38 1 0.4175 6.7983 1.4551 39 1 1.3401 6.8738 -0.0706 40 1 2.5934 5.0584 -0.7822 41 1 3.2257 5.5977 0.7919 42 1 2.9859 3.8623 0.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252579841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = 15.914545 kcal Electronic energy + Delta-G solvation = -19110.558082 eV Core-core repulsion = 16511.860025 eV Total energy + Delta-G solvation = -2598.698057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98787 -37.06119 -32.74595 -31.51771 -30.85314 -29.57963 -27.32186 -25.64215 -24.63980 -23.50443 -21.55462 -20.72727 -19.83898 -18.46697 -16.52013 -15.60591 -15.19015 -15.05763 -14.24887 -13.98167 -13.57765 -13.37104 -12.84240 -12.74008 -12.31133 -12.13442 -11.79219 -11.55883 -11.37812 -11.12896 -10.92746 -10.82140 -10.79234 -10.69316 -10.60835 -10.36257 -10.28760 -10.22219 -9.94333 -9.70046 -9.51737 -8.86693 -8.31075 -7.66120 -6.83926 -5.96922 -3.99536 3.31419 3.40018 3.44994 4.44227 4.56077 4.89127 4.99721 5.25213 5.32541 5.36697 5.65973 5.80553 5.93653 6.00678 6.05936 6.06654 6.13342 6.15784 6.19019 6.25402 6.29958 6.33137 6.35903 6.42559 6.51489 6.53341 6.72895 6.79748 6.89028 7.05568 7.16504 7.31299 7.51636 7.70822 7.76540 7.79495 7.93941 8.31394 8.49321 8.69373 9.08942 9.65561 11.09197 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.008848 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.820851 B = 3163.840514 C = 3756.510081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.524 5.524 14 C 0.036 3.964 15 C 0.059 3.941 16 C 0.081 3.919 17 H 0.059 0.941 18 C -0.126 4.126 19 C -0.141 4.141 20 C 0.038 3.962 21 N -0.512 5.512 22 C 0.016 3.984 23 H 0.041 0.959 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.016 0.984 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.011 0.989 41 H 0.047 0.953 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 6.378 3.970 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.248 5.248 14 C -0.113 4.113 15 C -0.070 4.070 16 C -0.027 4.027 17 H 0.077 0.923 18 C -0.165 4.165 19 C -0.179 4.179 20 C -0.091 4.091 21 N -0.236 5.236 22 C -0.132 4.132 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.878 6.600 4.433 10.513 hybrid contribution 0.428 -0.559 -1.308 1.485 sum -6.449 6.042 3.125 9.373 Atomic orbital electron populations 1.22123 0.99764 0.99403 0.99507 1.22269 0.91443 1.02492 1.03057 1.19388 0.95207 0.88434 0.86171 0.94860 1.21197 0.91015 1.35482 1.05126 0.91877 1.24934 0.97935 0.95663 0.95875 1.69886 1.34643 1.39139 1.09820 0.86554 0.86119 0.77499 0.77929 1.19687 1.21306 1.21284 1.62229 1.22602 1.34206 1.05727 1.22247 1.00805 0.94784 0.93435 1.22273 0.91943 0.94385 0.98434 1.22600 0.90768 0.92374 0.97006 0.92333 1.22726 0.97332 0.94989 1.01442 1.22756 0.97986 0.97186 1.00001 1.22875 0.94820 0.92890 0.98478 1.63389 1.02632 1.00704 1.56922 1.22771 0.88952 1.05922 0.95543 0.94057 0.93701 0.94958 0.88615 0.94074 0.93227 0.96548 0.91490 0.94001 0.92350 0.93845 0.91410 0.91029 0.91923 0.91443 0.91455 0.93506 0.97050 0.93453 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.08 37.16 0.30 -2.64 16 2 C -0.15 -3.53 4.71 -26.73 -0.13 -3.66 16 3 C 0.21 5.10 1.34 -68.86 -0.09 5.00 16 4 H 0.03 0.88 6.19 -51.93 -0.32 0.56 16 5 C -0.49 -12.89 7.20 -34.44 -0.25 -13.13 16 6 H 0.06 1.70 7.69 -52.49 -0.40 1.30 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.89 -24.93 11.30 55.43 0.63 -24.31 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.52 -10.91 3.07 -236.28 -0.73 -11.63 16 14 C 0.04 0.69 8.05 60.07 0.48 1.17 16 15 C 0.06 1.07 4.22 -3.82 -0.02 1.06 16 16 C 0.08 1.44 2.47 -66.19 -0.16 1.27 16 17 H 0.06 1.20 6.31 -51.93 -0.33 0.88 16 18 C -0.13 -1.79 6.49 -24.59 -0.16 -1.95 16 19 C -0.14 -1.82 6.95 -24.88 -0.17 -2.00 16 20 C 0.04 0.55 6.90 -2.81 -0.02 0.53 16 21 N -0.51 -9.06 5.04 -231.56 -1.17 -10.23 16 22 C 0.02 0.31 8.99 60.06 0.54 0.85 16 23 H 0.04 0.74 4.95 -51.93 -0.26 0.49 16 24 H 0.04 0.88 7.36 -51.93 -0.38 0.50 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 2.51 5.97 -51.93 -0.31 2.20 16 27 H 0.04 0.94 6.13 -51.93 -0.32 0.62 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.02 0.30 5.22 -51.93 -0.27 0.03 16 30 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.03 7.99 -51.93 -0.42 0.61 16 33 H 0.04 0.79 4.10 -51.93 -0.21 0.58 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.66 7.58 -51.93 -0.39 0.27 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 2.64 4.78 -51.93 -0.25 2.40 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -26.85 304.11 -8.65 -35.50 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.18 Total: 2.03 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 0.23 Total: -12.07 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.27 Total: -46.17 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.85 -8.65 -35.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252579841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.418 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds