Wall clock time and date at job start Mon Mar 30 2020 03:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 H 1.09001 * 109.46796 * 304.02325 * 3 2 1 5 5 C 1.50699 * 109.47428 * 184.02038 * 3 2 1 6 6 H 1.08000 * 120.00096 * 240.00022 * 5 3 2 7 7 C 1.37872 * 119.99838 * 59.99952 * 5 3 2 8 8 N 1.31512 * 120.00335 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99887 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46841 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46962 * 120.00017 * 9 7 5 12 12 H 1.48503 * 109.47102 * 239.99771 * 9 7 5 13 13 N 1.46908 * 109.47291 * 64.01787 * 3 2 1 14 14 C 1.46901 * 110.99542 * 37.07293 * 13 3 2 15 15 C 1.46902 * 110.99926 * 273.12383 * 13 3 2 16 16 C 1.53002 * 109.46764 * 287.90175 * 15 13 3 17 17 H 1.08998 * 110.41899 * 59.82696 * 16 15 13 18 18 C 1.54907 * 110.37019 * 182.13827 * 16 15 13 19 19 C 1.55137 * 101.68973 * 155.88190 * 18 16 15 20 20 C 1.54374 * 102.99489 * 324.39734 * 19 18 16 21 21 N 1.47443 * 107.25137 * 22.22633 * 20 19 18 22 22 C 1.46893 * 110.99748 * 123.29299 * 21 20 19 23 23 H 1.09006 * 109.46809 * 285.74619 * 1 2 3 24 24 H 1.08999 * 109.47028 * 45.75021 * 1 2 3 25 25 H 1.09002 * 109.47192 * 165.75349 * 1 2 3 26 26 H 1.08995 * 109.47203 * 240.00026 * 2 1 3 27 27 H 1.09004 * 109.47299 * 120.00093 * 2 1 3 28 28 H 0.97001 * 120.00327 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47392 * 289.73603 * 14 13 3 30 30 H 1.09003 * 109.47186 * 49.73989 * 14 13 3 31 31 H 1.09001 * 109.46682 * 169.73655 * 14 13 3 32 32 H 1.08997 * 109.46722 * 167.90794 * 15 13 3 33 33 H 1.08994 * 109.47353 * 47.90353 * 15 13 3 34 34 H 1.09004 * 110.99223 * 273.99350 * 18 16 15 35 35 H 1.09001 * 110.99124 * 37.77241 * 18 16 15 36 36 H 1.09005 * 110.70500 * 82.74373 * 19 18 16 37 37 H 1.08997 * 110.71028 * 205.98706 * 19 18 16 38 38 H 1.09005 * 109.84785 * 262.82978 * 20 19 18 39 39 H 1.08999 * 110.04309 * 141.72952 * 20 19 18 40 40 H 1.09002 * 109.47036 * 302.46422 * 22 21 20 41 41 H 1.09002 * 109.47520 * 62.46755 * 22 21 20 42 42 H 1.09006 * 109.46918 * 182.46597 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6190 1.9767 -0.8518 5 6 3.5437 1.4437 -0.0996 6 1 4.1365 1.8927 0.6836 7 6 4.1628 0.8715 -1.1906 8 7 3.4410 0.3252 -2.1447 9 14 6.0268 0.8724 -1.3138 10 1 6.6013 1.5444 -0.1207 11 1 6.5191 -0.5271 -1.3794 12 1 6.4415 1.6010 -2.5395 13 7 1.6312 2.1065 1.2451 14 6 1.6909 1.1772 2.3813 15 6 0.2904 2.6920 1.1137 16 6 0.3579 3.9224 0.2068 17 1 0.7258 3.6467 -0.7815 18 6 -1.0364 4.5883 0.0968 19 6 -0.6598 6.0469 -0.2738 20 6 0.6422 6.2820 0.5217 21 7 1.2246 4.9582 0.8082 22 6 2.5958 4.8630 0.2901 23 1 -0.3633 0.2789 0.9892 24 1 -0.3633 0.7171 -0.7361 25 1 -0.3634 -0.9961 -0.2529 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8766 -0.0777 -2.9121 29 1 0.8969 0.4365 2.2869 30 1 2.6579 0.6743 2.3890 31 1 1.5622 1.7315 3.3110 32 1 -0.0759 2.9854 2.0975 33 1 -0.3862 1.9565 0.6785 34 1 -1.6290 4.1255 -0.6924 35 1 -1.5632 4.5513 1.0504 36 1 -0.4785 6.1379 -1.3448 37 1 -1.4382 6.7393 0.0467 38 1 0.4175 6.7983 1.4551 39 1 1.3401 6.8738 -0.0706 40 1 2.5934 5.0584 -0.7822 41 1 3.2257 5.5977 0.7919 42 1 2.9859 3.8623 0.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252579841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:11 Heat of formation + Delta-G solvation = -0.512021 kcal Electronic energy + Delta-G solvation = -19111.270392 eV Core-core repulsion = 16511.860025 eV Total energy + Delta-G solvation = -2599.410366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41761 -38.63724 -34.70904 -32.81221 -32.56419 -31.00124 -29.19920 -27.03830 -26.13230 -25.37095 -23.15648 -21.87015 -21.42665 -20.10075 -18.42957 -17.08044 -16.92230 -16.40872 -16.09617 -15.57250 -14.97530 -14.89933 -14.48918 -14.21492 -13.76139 -13.56016 -13.38419 -13.17345 -13.06690 -12.76731 -12.66948 -12.63274 -12.27021 -12.12738 -12.00281 -11.98287 -11.78055 -11.58991 -11.54010 -11.46247 -11.28555 -10.80160 -10.36855 -9.07773 -8.49165 -8.03669 -6.12017 1.39689 1.43150 1.53890 2.45708 3.21904 3.24203 3.50795 3.84485 4.00732 4.15056 4.32273 4.44977 4.48997 4.57111 4.63651 4.65469 4.70917 4.74325 4.79990 4.86236 4.90059 4.94648 4.97133 5.02341 5.11465 5.12282 5.18843 5.30201 5.34585 5.40802 5.49734 5.56846 5.65859 5.81607 5.92059 6.28007 6.36955 6.43669 6.69407 6.91268 7.03802 7.56763 9.00691 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.008848 C = 0.007452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.820851 B = 3163.840514 C = 3756.510081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.149 4.149 3 C 0.229 3.771 4 H 0.001 0.999 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.533 5.533 14 C 0.039 3.961 15 C 0.061 3.939 16 C 0.078 3.922 17 H 0.020 0.980 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.033 3.967 21 N -0.520 5.520 22 C 0.025 3.975 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.257 0.743 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.047 0.953 40 H -0.002 1.002 41 H 0.061 0.939 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 7.398 5.166 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 C 0.122 3.878 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.187 4.187 8 N -0.561 5.561 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.256 5.256 14 C -0.109 4.109 15 C -0.067 4.067 16 C -0.030 4.030 17 H 0.038 0.962 18 C -0.158 4.158 19 C -0.172 4.172 20 C -0.094 4.094 21 N -0.244 5.244 22 C -0.123 4.123 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.017 0.983 41 H 0.080 0.920 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.194 7.630 5.642 12.538 hybrid contribution 0.831 -0.838 -1.642 2.022 sum -7.363 6.792 4.001 10.786 Atomic orbital electron populations 1.21973 0.96809 1.00267 1.00514 1.22114 0.94093 1.01423 1.01202 1.19025 0.93636 0.88604 0.86564 0.98075 1.21418 0.92616 1.34768 1.04633 0.93099 1.25584 1.01612 0.95676 0.95793 1.70013 1.35934 1.39946 1.10205 0.85678 0.81793 0.77420 0.77770 1.19354 1.20991 1.21197 1.62157 1.24568 1.34194 1.04729 1.22230 1.00069 0.94960 0.93653 1.22323 0.90498 0.94575 0.99353 1.22567 0.93007 0.92679 0.94780 0.96205 1.22714 0.95087 0.95295 1.02670 1.22743 0.97829 0.96969 0.99624 1.22987 0.95545 0.91192 0.99704 1.63386 1.01892 1.02375 1.56721 1.22565 0.90500 1.04300 0.94968 0.92117 0.94183 0.93497 0.92010 0.94248 0.93390 0.95560 0.93458 0.91863 0.90830 0.93555 0.90582 0.89423 0.92289 0.88410 0.89781 0.93429 0.98350 0.92045 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.08 71.98 0.58 -4.68 16 2 C -0.15 -6.95 4.71 30.59 0.14 -6.80 16 3 C 0.23 11.16 1.34 44.17 0.06 11.22 16 4 H 0.00 0.08 6.19 -2.39 -0.01 0.06 16 5 C -0.50 -26.88 7.20 25.60 0.18 -26.69 16 6 H 0.05 2.83 7.69 -2.91 -0.02 2.80 16 7 C 0.01 0.61 5.29 84.65 0.45 1.06 16 8 N -0.92 -52.79 11.30 21.44 0.24 -52.55 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 13 N -0.53 -22.11 3.07 -901.46 -2.77 -24.88 16 14 C 0.04 1.47 8.05 127.69 1.03 2.49 16 15 C 0.06 2.16 4.22 86.30 0.36 2.52 16 16 C 0.08 2.72 2.47 45.39 0.11 2.84 16 17 H 0.02 0.84 6.31 -2.39 -0.02 0.83 16 18 C -0.12 -3.07 6.49 31.98 0.21 -2.86 16 19 C -0.13 -3.07 6.95 31.79 0.22 -2.85 16 20 C 0.03 0.90 6.90 86.67 0.60 1.50 16 21 N -0.52 -17.84 5.04 -886.53 -4.47 -22.31 16 22 C 0.03 0.98 8.99 127.69 1.15 2.13 16 23 H 0.06 2.06 4.95 -2.38 -0.01 2.05 16 24 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 3.33 5.97 -2.39 -0.01 3.32 16 27 H 0.04 1.81 6.13 -2.38 -0.01 1.79 16 28 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.03 0.92 5.22 -2.39 -0.01 0.91 16 30 H 0.05 1.93 7.36 -2.39 -0.02 1.92 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.39 7.99 -2.39 -0.02 2.37 16 33 H 0.05 1.62 4.10 -2.39 -0.01 1.61 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.05 1.27 7.58 -2.39 -0.02 1.25 16 40 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.09 3.94 4.78 -2.38 -0.01 3.93 16 Total: -1.00 -58.90 304.11 1.10 -57.80 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.98 Total: 15.76 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.10 Total: -20.12 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -7.00 Total: -99.73 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -58.90 1.10 -57.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252579841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.289 kcal (2) G-P(sol) polarization free energy of solvation -58.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds