Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46848 * 2 1 4 4 H 1.09000 * 109.47099 * 303.19966 * 3 2 1 5 5 C 1.50698 * 109.47085 * 183.20401 * 3 2 1 6 6 H 1.08005 * 120.00153 * 240.00161 * 5 3 2 7 7 C 1.37880 * 119.99960 * 59.99532 * 5 3 2 8 8 N 1.31514 * 120.00214 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47227 * 60.00261 * 9 7 5 11 11 H 1.48497 * 109.47332 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47247 * 300.00480 * 9 7 5 13 13 N 1.46903 * 109.47257 * 63.20469 * 3 2 1 14 14 C 1.46844 * 110.99851 * 190.99722 * 13 3 2 15 15 C 1.53037 * 109.52104 * 174.15704 * 14 13 3 16 16 C 1.53115 * 109.27822 * 59.18421 * 15 14 13 17 17 H 1.09000 * 109.57605 * 62.27572 * 16 15 14 18 18 C 1.52997 * 109.52790 * 182.43625 * 16 15 14 19 19 C 1.53118 * 109.16291 * 302.34510 * 16 15 14 20 20 H 1.09008 * 109.49806 * 297.67588 * 19 16 15 21 21 C 1.52996 * 109.50921 * 177.59287 * 19 16 15 22 22 N 1.46904 * 109.47458 * 174.99869 * 21 19 16 23 23 C 1.46843 * 110.99810 * 66.79049 * 13 3 2 24 24 H 1.08994 * 109.47421 * 304.78421 * 1 2 3 25 25 H 1.09001 * 109.46804 * 64.78098 * 1 2 3 26 26 H 1.09001 * 109.46907 * 184.77924 * 1 2 3 27 27 H 1.09000 * 109.47596 * 239.99856 * 2 1 3 28 28 H 1.08998 * 109.46742 * 119.99327 * 2 1 3 29 29 H 0.96995 * 120.00070 * 179.97438 * 8 7 5 30 30 H 1.08991 * 109.46628 * 294.18033 * 14 13 3 31 31 H 1.09001 * 109.46051 * 54.15757 * 14 13 3 32 32 H 1.08998 * 109.50986 * 299.24180 * 15 14 13 33 33 H 1.09000 * 109.50283 * 179.12291 * 15 14 13 34 34 H 1.08994 * 109.47715 * 179.68314 * 18 16 15 35 35 H 1.09010 * 109.46535 * 59.68175 * 18 16 15 36 36 H 1.09002 * 109.47403 * 299.68967 * 18 16 15 37 37 H 1.08995 * 109.47375 * 295.00116 * 21 19 16 38 38 H 1.08998 * 109.46675 * 54.99860 * 21 19 16 39 39 H 1.00895 * 110.99538 * 56.04443 * 22 21 19 40 40 H 1.00892 * 110.99933 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.46440 * 65.82290 * 23 13 3 42 42 H 1.08995 * 109.45767 * 305.84743 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8599 5 6 3.5449 1.4434 -0.0794 6 1 4.1271 1.8961 0.7096 7 6 4.1785 0.8660 -1.1593 8 7 3.4697 0.3150 -2.1203 9 14 6.0439 0.8663 -1.2574 10 1 6.6014 0.1436 -0.0859 11 1 6.4740 0.1898 -2.5074 12 1 6.5394 2.2662 -1.2570 13 7 1.6145 2.1124 1.2363 14 6 1.8556 3.5589 1.1608 15 6 1.2699 4.2403 2.3996 16 6 1.9274 3.6593 3.6545 17 1 2.9969 3.8688 3.6367 18 6 1.3028 4.2930 4.8991 19 6 1.7032 2.1449 3.6841 20 1 0.6348 1.9363 3.7429 21 6 2.4081 1.5478 4.9036 22 7 2.0942 0.1158 4.9983 23 6 2.2762 1.5242 2.4079 24 1 -0.3634 0.5862 0.8440 25 1 -0.3633 0.4379 -0.9297 26 1 -0.3633 -1.0241 0.0856 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.9155 -0.0909 -2.8801 30 1 2.9283 3.7465 1.1160 31 1 1.3791 3.9603 0.2664 32 1 0.1948 4.0647 2.4376 33 1 1.4626 5.3120 2.3508 34 1 1.7675 3.8748 5.7920 35 1 0.2329 4.0848 4.9148 36 1 1.4629 5.3710 4.8772 37 1 3.4854 1.6775 4.8002 38 1 2.0660 2.0552 5.8055 39 1 2.3431 -0.3659 4.1475 40 1 2.5482 -0.3018 5.7967 41 1 3.3470 1.7214 2.3573 42 1 2.1052 0.4478 2.4192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253197056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = -36.927928 kcal Electronic energy + Delta-G solvation = -18912.415130 eV Core-core repulsion = 16311.425651 eV Total energy + Delta-G solvation = -2600.989479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50847 -37.37991 -35.27718 -34.14319 -32.83028 -31.00721 -29.32901 -27.49189 -25.95722 -24.81301 -23.00808 -22.05265 -20.97866 -20.52951 -18.34804 -17.19408 -16.67207 -16.28281 -15.84495 -15.35886 -15.17548 -14.81595 -14.70752 -14.53341 -14.23458 -13.69972 -13.46676 -13.19957 -13.03846 -12.94157 -12.75067 -12.60985 -12.47767 -12.25097 -12.02722 -11.86751 -11.56125 -11.54024 -11.40394 -11.06975 -10.87084 -10.69060 -10.42891 -9.55895 -8.87567 -8.02966 -6.26272 1.34530 1.35480 1.42735 2.37701 3.13883 3.42089 3.66439 3.93009 4.00610 4.10135 4.30279 4.51572 4.55316 4.62824 4.64586 4.74339 4.77144 4.83715 4.88903 4.93769 4.96742 5.01913 5.07515 5.15792 5.20861 5.29191 5.35107 5.39970 5.44343 5.47490 5.53226 5.63130 5.68945 5.80964 6.09185 6.22457 6.25927 6.41673 6.62621 6.74528 6.96584 7.44406 8.91022 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.008039 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.186372 B = 3482.093003 C = 3601.876291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.061 3.939 15 C -0.099 4.099 16 C -0.085 4.085 17 H 0.053 0.947 18 C -0.137 4.137 19 C -0.071 4.071 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.855 5.855 23 C 0.078 3.922 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.008 0.992 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.090 0.910 39 H 0.338 0.662 40 H 0.348 0.652 41 H 0.006 0.994 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 4.360 12.810 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.137 4.137 16 C -0.104 4.104 17 H 0.072 0.928 18 C -0.194 4.194 19 C -0.090 4.090 20 H 0.091 0.909 21 C -0.060 4.060 22 N -0.386 5.386 23 C -0.051 4.051 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.024 0.976 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.199 4.436 12.767 14.153 hybrid contribution 3.182 -0.238 -1.057 3.361 sum -1.017 4.199 11.710 12.482 Atomic orbital electron populations 1.21571 0.96352 0.99935 1.00507 1.21404 0.94420 0.98116 1.00152 1.19026 0.91456 0.91544 0.86736 0.98233 1.21927 0.94073 1.37115 1.05764 0.93543 1.25599 1.01748 0.95027 0.95450 1.69991 1.36379 1.38462 1.10088 0.85847 0.81664 0.78088 0.77433 1.19942 1.20738 1.20249 1.62317 1.56915 1.02571 1.03366 1.21910 0.97217 0.89325 0.98313 1.21591 1.00377 0.98962 0.92764 1.21126 0.99314 0.94155 0.95776 0.92807 1.21795 1.00853 1.00547 0.96199 1.21206 1.00472 0.94531 0.92786 0.90867 1.21833 0.96495 0.89188 0.98434 1.58780 1.67331 1.03501 1.08993 1.21860 0.94563 0.98409 0.90226 0.92386 0.94988 0.93555 0.92115 0.95089 0.92921 0.97340 0.93062 0.91285 0.90553 0.91773 0.92356 0.91879 0.96533 0.89226 0.84874 0.83908 0.97584 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.85 71.98 0.71 -4.47 16 2 C -0.10 -4.95 5.14 30.60 0.16 -4.80 16 3 C 0.22 11.11 1.72 44.17 0.08 11.18 16 4 H 0.00 -0.02 7.97 -2.39 -0.02 -0.03 16 5 C -0.55 -29.99 7.24 25.60 0.19 -29.80 16 6 H 0.05 2.56 5.84 -2.91 -0.02 2.55 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -52.33 11.30 21.45 0.24 -52.08 16 9 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.53 -22.38 3.89 -875.52 -3.41 -25.79 16 14 C 0.06 2.38 5.20 86.33 0.45 2.83 16 15 C -0.10 -2.91 5.38 30.65 0.16 -2.75 16 16 C -0.08 -2.28 2.29 -10.72 -0.02 -2.31 16 17 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 18 C -0.14 -2.76 8.91 71.98 0.64 -2.12 16 19 C -0.07 -2.12 2.06 -10.74 -0.02 -2.15 16 20 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 21 C 0.07 1.82 6.07 86.30 0.52 2.35 16 22 N -0.86 -21.38 9.62 -186.72 -1.80 -23.18 16 23 C 0.08 3.01 3.81 86.33 0.33 3.34 16 24 H 0.06 2.29 7.56 -2.39 -0.02 2.27 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 3.31 5.99 -2.39 -0.01 3.30 16 28 H 0.03 1.46 6.33 -2.39 -0.02 1.45 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.01 0.36 7.36 -2.39 -0.02 0.34 16 31 H 0.05 2.06 8.00 -2.39 -0.02 2.04 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.15 6.40 -2.39 -0.02 1.14 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 1.94 6.26 -2.39 -0.01 1.92 16 39 H 0.34 9.34 7.28 -89.70 -0.65 8.69 16 40 H 0.35 6.92 9.08 -89.70 -0.81 6.11 16 41 H 0.01 0.26 6.33 -2.39 -0.02 0.25 16 42 H 0.06 2.37 4.78 -2.39 -0.01 2.36 16 Total: -1.00 -58.98 309.40 0.23 -58.74 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.47 Total: 23.47 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.64 Total: -27.04 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.96 Total: -101.05 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.98 0.23 -58.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253197056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.817 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds