Wall clock time and date at job start Mon Mar 30 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09002 * 109.47051 * 54.99879 * 3 2 1 5 5 C 1.52999 * 109.47316 * 174.99910 * 3 2 1 6 6 N 1.46895 * 109.47218 * 295.00054 * 3 2 1 7 7 C 1.46842 * 111.00220 * 299.20743 * 6 3 2 8 8 C 1.53039 * 109.52735 * 174.16075 * 7 6 3 9 9 C 1.53124 * 109.30842 * 59.15472 * 8 7 6 10 10 C 1.53117 * 109.16368 * 302.40923 * 9 8 7 11 11 H 1.08998 * 109.49866 * 297.63535 * 10 9 8 12 12 N 1.46492 * 109.50474 * 177.55383 * 10 9 8 13 13 C 1.46501 * 120.00105 * 300.07679 * 12 10 9 14 14 C 1.36940 * 120.00030 * 120.07945 * 12 10 9 15 15 H 1.08006 * 119.99971 * 22.03169 * 14 12 10 16 16 C 1.38808 * 120.00198 * 202.03964 * 14 12 10 17 17 N 1.31623 * 120.00217 * 12.48930 * 16 14 12 18 18 Si 1.86800 * 120.00106 * 192.49459 * 16 14 12 19 19 H 1.48494 * 109.47151 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47338 * 120.00131 * 18 16 14 21 21 H 1.48504 * 109.47246 * 239.99873 * 18 16 14 22 22 C 1.46851 * 110.99850 * 174.99557 * 6 3 2 23 23 H 1.09007 * 109.47106 * 59.99869 * 1 2 3 24 24 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47580 * 299.99826 * 1 2 3 26 26 H 1.08995 * 109.47574 * 240.00626 * 2 1 3 27 27 H 1.08994 * 109.47271 * 119.99877 * 2 1 3 28 28 H 1.08996 * 109.47091 * 60.00428 * 5 3 2 29 29 H 1.09001 * 109.46770 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.46880 * 299.99879 * 5 3 2 31 31 H 1.08999 * 109.46044 * 294.17668 * 7 6 3 32 32 H 1.08997 * 109.46386 * 54.15514 * 7 6 3 33 33 H 1.08996 * 109.50623 * 179.12253 * 8 7 6 34 34 H 1.09000 * 109.50340 * 299.20053 * 8 7 6 35 35 H 1.09005 * 109.55706 * 182.47974 * 9 8 7 36 36 H 1.09001 * 109.48657 * 62.29771 * 9 8 7 37 37 H 1.09006 * 109.46599 * 94.32666 * 13 12 10 38 38 H 1.09002 * 109.46887 * 214.31962 * 13 12 10 39 39 H 1.08995 * 109.46795 * 334.32359 * 13 12 10 40 40 H 0.97000 * 120.00147 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.45936 * 65.83051 * 22 6 3 42 42 H 1.08997 * 109.46639 * 305.85365 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6513 2.0993 -1.2552 7 6 2.2355 1.4099 -2.4127 8 6 1.6948 2.0294 -3.7034 9 6 2.0516 3.5181 -3.7388 10 6 1.4734 4.2031 -2.4974 11 1 0.3864 4.1231 -2.5108 12 7 1.8599 5.6161 -2.4939 13 6 3.2768 5.9880 -2.4767 14 6 0.8967 6.5895 -2.5066 15 1 -0.1037 6.3637 -2.1678 16 6 1.2060 7.8662 -2.9550 17 7 2.3368 8.0839 -3.5925 18 14 0.0176 9.2755 -2.6536 19 1 -1.1722 8.7717 -1.9216 20 1 0.6889 10.3250 -1.8454 21 1 -0.4091 9.8501 -3.9548 22 6 2.0206 3.5206 -1.2417 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9994 0.9055 -0.7161 29 1 3.9280 2.4722 0.1262 30 1 3.8531 0.9571 1.0572 31 1 3.3203 1.5128 -2.3872 32 1 1.9700 0.3534 -2.3781 33 1 2.1404 1.5278 -4.5623 34 1 0.6114 1.9140 -3.7364 35 1 1.6305 3.9730 -4.6354 36 1 3.1356 3.6321 -3.7462 37 1 3.6211 6.1542 -3.4975 38 1 3.4057 6.9017 -1.8965 39 1 3.8577 5.1847 -2.0236 40 1 2.5528 8.9760 -3.9062 41 1 3.1064 3.6135 -1.2217 42 1 1.5990 3.9970 -0.3566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259476581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:48 Heat of formation + Delta-G solvation = 15.299475 kcal Electronic energy + Delta-G solvation = -18671.410677 eV Core-core repulsion = 16072.685948 eV Total energy + Delta-G solvation = -2598.724729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.30589 -36.16471 -33.99030 -31.46433 -31.19581 -29.05019 -28.31440 -25.93395 -24.36082 -23.57919 -22.59186 -21.47588 -19.34822 -18.47263 -16.66339 -16.13222 -14.84643 -14.70562 -14.34835 -13.91583 -13.81133 -13.60371 -13.41818 -12.90362 -12.74144 -12.39371 -12.02424 -11.86296 -11.72394 -11.54354 -11.13436 -10.98575 -10.87565 -10.76823 -10.67250 -10.40629 -10.35166 -10.14648 -10.06578 -9.76648 -9.72558 -9.47688 -8.48656 -7.85524 -6.68291 -5.65671 -3.10373 3.41646 3.48794 3.51149 4.18131 4.58014 4.84359 5.12435 5.24375 5.28626 5.43889 5.46813 5.50204 5.59954 5.65718 5.66454 5.79856 5.81182 5.88761 5.91333 6.04689 6.08538 6.12412 6.21214 6.29979 6.35863 6.39516 6.44272 6.49452 6.61174 6.66279 6.83072 7.09556 7.14117 7.45007 7.52320 7.54741 7.79828 7.87930 8.47594 9.31280 9.95517 10.44245 11.39553 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033425 B = 0.006089 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.492660 B = 4597.155870 C = 4742.687144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.079 0.921 5 C -0.187 4.187 6 N -0.526 5.526 7 C 0.054 3.946 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.184 3.816 11 H 0.068 0.932 12 N -0.596 5.596 13 C 0.165 3.835 14 C -0.249 4.249 15 H 0.069 0.931 16 C -0.001 4.001 17 N -0.910 5.910 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.045 3.955 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.041 0.959 39 H -0.005 1.005 40 H 0.250 0.750 41 H 0.030 0.970 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -15.006 5.090 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.029 4.029 4 H 0.097 0.903 5 C -0.246 4.246 6 N -0.251 5.251 7 C -0.074 4.074 8 C -0.152 4.152 9 C -0.171 4.171 10 C 0.075 3.925 11 H 0.086 0.914 12 N -0.318 5.318 13 C 0.020 3.980 14 C -0.378 4.378 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.556 5.556 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.084 4.084 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.013 0.987 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.166 -14.837 4.988 15.654 hybrid contribution 0.492 0.964 0.158 1.094 sum 0.658 -13.873 5.146 14.811 Atomic orbital electron populations 1.21655 0.95258 1.00377 1.02798 1.21615 0.96819 0.95584 1.01304 1.21731 0.92848 0.95102 0.93255 0.90286 1.22473 0.98216 1.02248 1.01626 1.62130 1.58934 1.02824 1.01175 1.22119 0.96457 0.97794 0.91041 1.21574 1.01279 0.96756 0.95623 1.22132 1.00570 0.93575 1.00811 1.20259 0.97840 0.84061 0.90290 0.91410 1.43948 1.02708 0.99417 1.85747 1.20731 0.83016 0.95161 0.99058 1.19303 0.92629 0.90021 1.35874 0.91304 1.24991 0.97537 0.98633 0.98716 1.70091 1.24165 1.20589 1.40738 0.86195 0.80412 0.82641 0.77395 1.20341 1.21747 1.21834 1.22716 0.98303 0.86277 1.01130 0.91258 0.93886 0.93230 0.91966 0.92370 0.92572 0.92270 0.92645 0.95276 0.91302 0.92598 0.91615 0.92040 0.93152 0.95480 0.94015 0.98659 0.93955 0.95141 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.80 37.15 0.36 -1.20 16 2 C -0.12 -1.25 5.22 -26.73 -0.14 -1.39 16 3 C 0.08 1.02 2.35 -67.71 -0.16 0.86 16 4 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 5 C -0.19 -2.27 8.50 37.16 0.32 -1.95 16 6 N -0.53 -7.93 4.10 -226.69 -0.93 -8.86 16 7 C 0.05 0.75 4.64 -3.84 -0.02 0.74 16 8 C -0.11 -1.72 6.09 -26.65 -0.16 -1.89 16 9 C -0.13 -2.50 5.32 -26.61 -0.14 -2.64 16 10 C 0.18 3.88 2.75 -67.85 -0.19 3.69 16 11 H 0.07 1.50 7.86 -51.93 -0.41 1.10 16 12 N -0.60 -15.17 2.82 -173.39 -0.49 -15.66 16 13 C 0.17 4.16 7.96 59.85 0.48 4.63 16 14 C -0.25 -6.95 9.60 -15.06 -0.14 -7.09 16 15 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 16 C 0.00 -0.03 5.11 -17.43 -0.09 -0.12 16 17 N -0.91 -26.98 10.63 55.49 0.59 -26.39 16 18 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.04 0.82 4.31 -3.83 -0.02 0.80 16 23 H 0.07 0.87 7.75 -51.92 -0.40 0.46 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.67 6.05 -51.93 -0.31 0.35 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.67 6.52 -51.93 -0.34 0.33 16 29 H 0.06 0.81 6.65 -51.93 -0.35 0.46 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.42 6.62 -51.93 -0.34 0.08 16 32 H 0.07 0.85 5.93 -51.93 -0.31 0.55 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.99 7.60 -51.93 -0.39 0.60 16 37 H 0.03 0.74 7.41 -51.93 -0.38 0.35 16 38 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 39 H -0.01 -0.11 6.42 -51.93 -0.33 -0.45 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.58 5.21 -51.93 -0.27 0.30 16 42 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -28.90 310.61 -8.64 -37.54 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.56 Total: -2.95 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 0.10 Total: -5.56 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.83 Total: -50.91 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.90 -8.64 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259476581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.840 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds