Wall clock time and date at job start Mon Mar 30 2020 03:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 H 1.09002 * 109.47051 * 54.99879 * 3 2 1 5 5 C 1.52999 * 109.47316 * 174.99910 * 3 2 1 6 6 N 1.46895 * 109.47218 * 295.00054 * 3 2 1 7 7 C 1.46842 * 111.00220 * 299.20743 * 6 3 2 8 8 C 1.53039 * 109.52735 * 174.16075 * 7 6 3 9 9 C 1.53124 * 109.30842 * 59.15472 * 8 7 6 10 10 C 1.53117 * 109.16368 * 302.40923 * 9 8 7 11 11 H 1.08998 * 109.49866 * 297.63535 * 10 9 8 12 12 N 1.46492 * 109.50474 * 177.55383 * 10 9 8 13 13 C 1.46501 * 120.00105 * 300.07679 * 12 10 9 14 14 C 1.36940 * 120.00030 * 120.07945 * 12 10 9 15 15 H 1.08006 * 119.99971 * 22.03169 * 14 12 10 16 16 C 1.38808 * 120.00198 * 202.03964 * 14 12 10 17 17 N 1.31623 * 120.00217 * 12.48930 * 16 14 12 18 18 Si 1.86800 * 120.00106 * 192.49459 * 16 14 12 19 19 H 1.48494 * 109.47151 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47338 * 120.00131 * 18 16 14 21 21 H 1.48504 * 109.47246 * 239.99873 * 18 16 14 22 22 C 1.46851 * 110.99850 * 174.99557 * 6 3 2 23 23 H 1.09007 * 109.47106 * 59.99869 * 1 2 3 24 24 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47580 * 299.99826 * 1 2 3 26 26 H 1.08995 * 109.47574 * 240.00626 * 2 1 3 27 27 H 1.08994 * 109.47271 * 119.99877 * 2 1 3 28 28 H 1.08996 * 109.47091 * 60.00428 * 5 3 2 29 29 H 1.09001 * 109.46770 * 180.02562 * 5 3 2 30 30 H 1.09005 * 109.46880 * 299.99879 * 5 3 2 31 31 H 1.08999 * 109.46044 * 294.17668 * 7 6 3 32 32 H 1.08997 * 109.46386 * 54.15514 * 7 6 3 33 33 H 1.08996 * 109.50623 * 179.12253 * 8 7 6 34 34 H 1.09000 * 109.50340 * 299.20053 * 8 7 6 35 35 H 1.09005 * 109.55706 * 182.47974 * 9 8 7 36 36 H 1.09001 * 109.48657 * 62.29771 * 9 8 7 37 37 H 1.09006 * 109.46599 * 94.32666 * 13 12 10 38 38 H 1.09002 * 109.46887 * 214.31962 * 13 12 10 39 39 H 1.08995 * 109.46795 * 334.32359 * 13 12 10 40 40 H 0.97000 * 120.00147 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.45936 * 65.83051 * 22 6 3 42 42 H 1.08997 * 109.46639 * 305.85365 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6513 2.0993 -1.2552 7 6 2.2355 1.4099 -2.4127 8 6 1.6948 2.0294 -3.7034 9 6 2.0516 3.5181 -3.7388 10 6 1.4734 4.2031 -2.4974 11 1 0.3864 4.1231 -2.5108 12 7 1.8599 5.6161 -2.4939 13 6 3.2768 5.9880 -2.4767 14 6 0.8967 6.5895 -2.5066 15 1 -0.1037 6.3637 -2.1678 16 6 1.2060 7.8662 -2.9550 17 7 2.3368 8.0839 -3.5925 18 14 0.0176 9.2755 -2.6536 19 1 -1.1722 8.7717 -1.9216 20 1 0.6889 10.3250 -1.8454 21 1 -0.4091 9.8501 -3.9548 22 6 2.0206 3.5206 -1.2417 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.9994 0.9055 -0.7161 29 1 3.9280 2.4722 0.1262 30 1 3.8531 0.9571 1.0572 31 1 3.3203 1.5128 -2.3872 32 1 1.9700 0.3534 -2.3781 33 1 2.1404 1.5278 -4.5623 34 1 0.6114 1.9140 -3.7364 35 1 1.6305 3.9730 -4.6354 36 1 3.1356 3.6321 -3.7462 37 1 3.6211 6.1542 -3.4975 38 1 3.4057 6.9017 -1.8965 39 1 3.8577 5.1847 -2.0236 40 1 2.5528 8.9760 -3.9062 41 1 3.1064 3.6135 -1.2217 42 1 1.5990 3.9970 -0.3566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259476581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:47 Heat of formation + Delta-G solvation = -1.480722 kcal Electronic energy + Delta-G solvation = -18672.138321 eV Core-core repulsion = 16072.685948 eV Total energy + Delta-G solvation = -2599.452373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61113 -37.77748 -35.54862 -33.13868 -32.56009 -30.23025 -29.88529 -28.05319 -25.56601 -25.23264 -23.77161 -22.99440 -20.69299 -19.91078 -18.71968 -17.43537 -16.72904 -16.02567 -15.65585 -15.48504 -15.16057 -14.95993 -14.59354 -14.41779 -14.37854 -13.83709 -13.39352 -13.33691 -12.96916 -12.83486 -12.78208 -12.58064 -12.48924 -12.22633 -12.05644 -12.03515 -11.88265 -11.68968 -11.46809 -11.36360 -11.25277 -11.03841 -10.62052 -9.10244 -8.75817 -7.82146 -5.29399 1.45492 1.46323 1.57387 2.49399 2.98886 3.31331 3.71261 3.91280 4.04501 4.06946 4.21703 4.26510 4.34452 4.47810 4.50365 4.58820 4.66017 4.73678 4.79276 4.80765 4.87844 4.90905 4.96949 5.02374 5.11913 5.18793 5.20130 5.25162 5.27361 5.30831 5.44365 5.52157 5.55128 5.63356 5.65339 5.70202 6.21010 6.35854 6.37239 7.16087 7.89141 8.32772 9.21649 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033425 B = 0.006089 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.492660 B = 4597.155870 C = 4742.687144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.077 3.923 4 H 0.071 0.929 5 C -0.182 4.182 6 N -0.529 5.529 7 C 0.056 3.944 8 C -0.105 4.105 9 C -0.123 4.123 10 C 0.180 3.820 11 H 0.052 0.948 12 N -0.612 5.612 13 C 0.185 3.815 14 C -0.260 4.260 15 H 0.069 0.931 16 C -0.055 4.055 17 N -0.941 5.941 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.064 3.936 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.000 1.000 38 H 0.014 0.986 39 H 0.023 0.977 40 H 0.247 0.753 41 H 0.024 0.976 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -17.221 5.870 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.031 4.031 4 H 0.089 0.911 5 C -0.240 4.240 6 N -0.254 5.254 7 C -0.071 4.071 8 C -0.144 4.144 9 C -0.162 4.162 10 C 0.073 3.927 11 H 0.071 0.929 12 N -0.335 5.335 13 C 0.040 3.960 14 C -0.390 4.390 15 H 0.086 0.914 16 C -0.249 4.249 17 N -0.588 5.588 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.217 1.217 21 H -0.219 1.219 22 C -0.065 4.065 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.198 -17.099 5.783 18.052 hybrid contribution 0.583 1.579 -0.065 1.685 sum 0.385 -15.520 5.717 16.544 Atomic orbital electron populations 1.21629 0.95439 1.01132 1.01725 1.21587 0.96542 0.93888 1.02603 1.21831 0.93497 0.96208 0.91606 0.91117 1.22416 0.97403 1.01272 1.02940 1.62098 1.59304 1.01132 1.02868 1.22169 0.96345 0.98916 0.89709 1.21531 1.01625 0.93708 0.97505 1.21975 0.99533 0.96316 0.98412 1.20414 0.97216 0.82389 0.92699 0.92921 1.44170 1.02328 1.01011 1.85965 1.20397 0.83555 0.94889 0.97123 1.19606 0.93101 0.91007 1.35260 0.91371 1.25761 0.99311 1.00964 0.98904 1.70253 1.25905 1.20760 1.41924 0.85170 0.78677 0.79355 0.77064 1.19148 1.21744 1.21865 1.22298 0.97335 0.88333 0.98564 0.93058 0.92231 0.93603 0.91221 0.90444 0.92057 0.94293 0.90668 0.95211 0.88509 0.90159 0.91509 0.94538 0.93980 0.98142 0.96721 0.95896 0.94363 0.95789 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 71.98 0.71 -2.00 16 2 C -0.11 -1.96 5.22 30.59 0.16 -1.80 16 3 C 0.08 1.79 2.35 44.92 0.11 1.90 16 4 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 5 C -0.18 -3.96 8.50 71.98 0.61 -3.34 16 6 N -0.53 -15.07 4.10 -871.12 -3.57 -18.64 16 7 C 0.06 1.42 4.64 86.33 0.40 1.82 16 8 C -0.11 -2.97 6.09 30.65 0.19 -2.79 16 9 C -0.12 -4.67 5.32 30.67 0.16 -4.51 16 10 C 0.18 7.67 2.75 45.05 0.12 7.79 16 11 H 0.05 2.38 7.86 -2.39 -0.02 2.36 16 12 N -0.61 -31.91 2.82 -702.49 -1.98 -33.89 16 13 C 0.19 9.61 7.96 127.77 1.02 10.62 16 14 C -0.26 -14.80 9.60 84.03 0.81 -13.99 16 15 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 16 C -0.05 -3.17 5.11 84.86 0.43 -2.73 16 17 N -0.94 -57.32 10.63 21.65 0.23 -57.09 16 18 Si 0.97 46.36 29.57 68.60 2.03 48.39 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 C 0.06 2.33 4.31 86.33 0.37 2.70 16 23 H 0.05 1.17 7.75 -2.38 -0.02 1.15 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.18 6.05 -2.39 -0.01 1.17 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.28 6.52 -2.39 -0.02 1.26 16 29 H 0.04 1.00 6.65 -2.39 -0.02 0.98 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.03 0.77 6.62 -2.39 -0.02 0.76 16 32 H 0.10 1.99 5.93 -2.39 -0.01 1.97 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 37 H 0.00 0.02 7.41 -2.38 -0.02 0.00 16 38 H 0.01 0.80 7.21 -2.39 -0.02 0.78 16 39 H 0.02 1.03 6.42 -2.39 -0.02 1.01 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.02 0.90 5.21 -2.39 -0.01 0.88 16 42 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 Total: -1.00 -63.17 310.61 2.76 -60.41 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.96 Total: 7.16 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.09 Total: -6.34 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -5.32 Total: -109.61 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -63.17 2.76 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259476581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.932 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds