Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.08998 * 109.47364 * 303.81826 * 3 2 1 5 5 C 1.52994 * 109.47288 * 63.81695 * 3 2 1 6 6 N 1.46903 * 109.47260 * 183.81654 * 3 2 1 7 7 C 1.46850 * 110.99822 * 61.24824 * 6 3 2 8 8 C 1.53031 * 109.52036 * 185.84092 * 7 6 3 9 9 C 1.53113 * 109.28169 * 300.82029 * 8 7 6 10 10 C 1.53123 * 109.15980 * 57.65996 * 9 8 7 11 11 H 1.08999 * 109.50375 * 62.27991 * 10 9 8 12 12 N 1.46501 * 109.50519 * 182.36742 * 10 9 8 13 13 C 1.46496 * 120.00243 * 59.99862 * 12 10 9 14 14 C 1.36936 * 119.99700 * 240.00032 * 12 10 9 15 15 H 1.07996 * 119.99951 * 23.89079 * 14 12 10 16 16 C 1.38814 * 119.99806 * 203.90288 * 14 12 10 17 17 N 1.31614 * 120.00114 * 10.79566 * 16 14 12 18 18 Si 1.86801 * 119.99923 * 190.80598 * 16 14 12 19 19 H 1.48495 * 109.47603 * 89.99322 * 18 16 14 20 20 H 1.48500 * 109.47135 * 209.99702 * 18 16 14 21 21 H 1.48508 * 109.46890 * 329.99189 * 18 16 14 22 22 C 1.46843 * 111.00009 * 185.46207 * 6 3 2 23 23 H 1.09000 * 109.46864 * 54.07157 * 1 2 3 24 24 H 1.09003 * 109.46845 * 294.07295 * 1 2 3 25 25 H 1.09001 * 109.47011 * 174.07629 * 1 2 3 26 26 H 1.08995 * 109.47210 * 119.99849 * 2 1 3 27 27 H 1.08998 * 109.46848 * 240.00430 * 2 1 3 28 28 H 1.09000 * 109.47436 * 300.00325 * 5 3 2 29 29 H 1.09009 * 109.47291 * 59.99922 * 5 3 2 30 30 H 1.09000 * 109.47711 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.46413 * 305.86125 * 7 6 3 32 32 H 1.09008 * 109.45685 * 65.82782 * 7 6 3 33 33 H 1.09000 * 109.50796 * 60.76688 * 8 7 6 34 34 H 1.09010 * 109.50134 * 180.84187 * 8 7 6 35 35 H 1.09005 * 109.52798 * 177.56318 * 9 8 7 36 36 H 1.09000 * 109.52550 * 297.75200 * 9 8 7 37 37 H 1.09001 * 109.47436 * 95.26765 * 13 12 10 38 38 H 1.09004 * 109.47128 * 215.27155 * 13 12 10 39 39 H 1.09002 * 109.47046 * 335.26302 * 13 12 10 40 40 H 0.96999 * 120.00329 * 180.02562 * 17 16 14 41 41 H 1.08993 * 109.46362 * 294.17485 * 22 6 3 42 42 H 1.08996 * 109.46356 * 54.14622 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6219 1.9757 -0.8538 5 6 1.6099 2.1355 1.2944 6 7 3.5061 1.4436 -0.0922 7 6 3.9555 0.8114 -1.3391 8 6 5.4817 0.6993 -1.3345 9 6 6.0909 2.0976 -1.2010 10 6 5.5693 2.7528 0.0809 11 1 5.8877 2.1681 0.9439 12 7 6.1033 4.1129 0.1873 13 6 5.8118 5.0981 -0.8569 14 6 6.8749 4.4632 1.2630 15 1 7.4083 3.7036 1.8152 16 6 6.9713 5.7946 1.6438 17 7 6.1650 6.6903 1.1149 18 14 8.2457 6.3149 2.9066 19 1 9.5081 6.6793 2.2148 20 1 7.7407 7.4874 3.6653 21 1 8.5012 5.1916 3.8438 22 6 4.0404 2.8055 0.0353 23 1 -0.3633 0.6030 -0.8322 24 1 -0.3633 0.4192 0.9383 25 1 -0.3633 -1.0222 -0.1061 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 0.5221 2.1347 1.3629 29 1 2.0281 1.6023 2.1483 30 1 1.9736 3.1631 1.2947 31 1 3.5184 -0.1839 -1.4198 32 1 3.6383 1.4171 -2.1881 33 1 5.7988 0.0824 -0.4937 34 1 5.8159 0.2436 -2.2667 35 1 7.1771 2.0188 -1.1538 36 1 5.8059 2.7029 -2.0615 37 1 4.9504 5.6969 -0.5613 38 1 6.6760 5.7480 -0.9947 39 1 5.5923 4.5825 -1.7919 40 1 6.2326 7.6208 1.3807 41 1 3.7229 3.4017 -0.8201 42 1 3.6651 3.2584 0.9529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259476591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = 15.231184 kcal Electronic energy + Delta-G solvation = -18551.919005 eV Core-core repulsion = 15953.191315 eV Total energy + Delta-G solvation = -2598.727690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.09532 -36.17696 -34.22327 -31.66886 -31.23763 -28.77316 -28.20866 -25.92689 -24.80662 -23.44470 -22.32229 -21.03629 -19.60747 -18.61665 -16.69156 -16.08959 -15.05197 -14.79855 -14.46102 -13.84187 -13.64908 -13.52300 -13.37645 -12.87755 -12.56475 -12.44409 -12.23178 -11.84240 -11.71664 -11.41190 -11.17799 -10.99002 -10.84986 -10.74711 -10.61252 -10.52901 -10.31655 -10.14892 -10.10209 -9.74707 -9.64632 -9.44862 -8.48883 -7.85927 -6.66695 -5.65348 -3.12796 3.42173 3.48265 3.49753 4.17444 4.56797 4.94821 5.00045 5.26331 5.35817 5.40500 5.47742 5.50679 5.63266 5.64653 5.65946 5.74778 5.82980 5.93403 5.95051 6.07333 6.12984 6.17256 6.18571 6.24850 6.33091 6.37639 6.48014 6.54319 6.58789 6.62379 6.83712 7.09542 7.11128 7.44087 7.57231 7.61326 7.80010 7.87355 8.48356 9.31348 9.94983 10.44823 11.38917 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030794 B = 0.006240 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.054980 B = 4486.198656 C = 4924.698551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.082 3.918 4 H 0.032 0.968 5 C -0.149 4.149 6 N -0.534 5.534 7 C 0.056 3.944 8 C -0.112 4.112 9 C -0.134 4.134 10 C 0.183 3.817 11 H 0.068 0.932 12 N -0.595 5.595 13 C 0.164 3.836 14 C -0.250 4.250 15 H 0.068 0.932 16 C 0.001 3.999 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.044 3.956 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.039 0.961 39 H -0.003 1.003 40 H 0.251 0.749 41 H 0.023 0.977 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 -11.749 -4.271 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.026 4.026 4 H 0.050 0.950 5 C -0.207 4.207 6 N -0.259 5.259 7 C -0.072 4.072 8 C -0.150 4.150 9 C -0.173 4.173 10 C 0.075 3.925 11 H 0.086 0.914 12 N -0.317 5.317 13 C 0.019 3.981 14 C -0.380 4.380 15 H 0.086 0.914 16 C -0.197 4.197 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.085 4.085 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.008 -11.802 -3.839 14.770 hybrid contribution 0.282 1.004 -0.074 1.046 sum -7.727 -10.798 -3.912 13.842 Atomic orbital electron populations 1.21805 0.96048 1.01200 1.01826 1.21615 0.95054 0.96433 1.02407 1.21593 0.88117 0.95585 0.97348 0.94970 1.21958 1.00198 1.01162 0.97339 1.62027 1.07833 1.20923 1.35149 1.22093 0.96162 0.98565 0.90387 1.21537 0.94281 0.98168 1.01049 1.22123 1.00232 0.94763 1.00213 1.20309 0.89693 0.87078 0.95444 0.91370 1.43946 1.58188 1.06821 1.22747 1.20746 1.00038 0.90552 0.86768 1.19248 1.20007 0.92286 1.06423 0.91432 1.25049 0.98786 0.96964 0.98879 1.70059 1.37936 1.01633 1.45900 0.86254 0.81167 0.77971 0.81162 1.21599 1.21815 1.20477 1.22863 0.98217 0.86749 1.00699 0.93048 0.92476 0.92972 0.91242 0.92088 0.92632 0.91873 0.91949 0.91291 0.95741 0.91504 0.92496 0.92217 0.92919 0.95333 0.94238 0.98503 0.93876 0.95879 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.49 37.16 0.35 -1.11 16 2 C -0.12 -1.35 5.34 -26.73 -0.14 -1.50 16 3 C 0.08 1.15 2.16 -67.71 -0.15 1.01 16 4 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -2.08 8.53 37.15 0.32 -1.77 16 6 N -0.53 -8.66 4.52 -226.69 -1.03 -9.68 16 7 C 0.06 0.81 5.25 -3.84 -0.02 0.79 16 8 C -0.11 -1.66 6.09 -26.66 -0.16 -1.83 16 9 C -0.13 -2.45 5.31 -26.61 -0.14 -2.59 16 10 C 0.18 3.91 2.75 -67.84 -0.19 3.73 16 11 H 0.07 1.53 7.87 -51.93 -0.41 1.12 16 12 N -0.60 -15.21 2.81 -173.39 -0.49 -15.70 16 13 C 0.16 4.14 7.98 59.84 0.48 4.62 16 14 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 15 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 16 C 0.00 0.03 5.15 -17.43 -0.09 -0.06 16 17 N -0.91 -26.89 10.64 55.49 0.59 -26.30 16 18 Si 0.90 22.19 29.57 -169.99 -5.03 17.16 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.04 0.86 4.40 -3.83 -0.02 0.84 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.54 6.83 -51.93 -0.35 0.19 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.68 6.12 -51.93 -0.32 0.36 16 28 H 0.05 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.99 6.20 -51.93 -0.32 0.67 16 31 H 0.07 0.87 5.97 -51.93 -0.31 0.56 16 32 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.99 6.59 -51.93 -0.34 0.65 16 37 H 0.03 0.78 7.32 -51.93 -0.38 0.40 16 38 H 0.04 1.07 7.35 -51.93 -0.38 0.69 16 39 H 0.00 -0.08 6.41 -51.93 -0.33 -0.41 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.48 7.64 -51.93 -0.40 0.08 16 42 H 0.08 1.69 5.88 -51.93 -0.31 1.38 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -29.04 311.15 -8.71 -37.75 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.55 Total: -2.93 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 0.10 Total: -4.99 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.92 Total: -51.68 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.04 -8.71 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259476591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.979 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds