Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1 6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2 7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4 8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5 9 9 N 1.46891 * 109.47057 * 294.68419 * 8 7 6 10 10 C 1.46901 * 110.99762 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47397 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00465 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99960 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00345 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47118 * 89.99896 * 15 13 11 17 17 H 1.48496 * 109.47100 * 210.00033 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00270 * 15 13 11 19 19 C 1.53121 * 109.15988 * 302.34517 * 7 6 5 20 20 C 1.46850 * 111.00522 * 174.99713 * 4 2 1 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09001 * 109.46345 * 294.17005 * 5 4 2 29 29 H 1.09000 * 109.46432 * 54.14079 * 5 4 2 30 30 H 1.08997 * 109.50332 * 299.23389 * 6 5 4 31 31 H 1.08998 * 109.50497 * 179.11583 * 6 5 4 32 32 H 1.09001 * 109.57729 * 62.28139 * 7 6 5 33 33 H 1.08999 * 109.46648 * 54.68109 * 8 7 6 34 34 H 1.08997 * 109.46565 * 174.67784 * 8 7 6 35 35 H 1.00901 * 111.00734 * 56.04834 * 9 8 7 36 36 H 1.09000 * 109.47496 * 299.99691 * 10 9 8 37 37 H 1.09000 * 109.47525 * 59.99994 * 10 9 8 38 38 H 0.96998 * 120.00440 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.49895 * 297.71693 * 19 7 6 40 40 H 1.08996 * 109.53497 * 177.62117 * 19 7 6 41 41 H 1.08998 * 109.46273 * 305.86025 * 20 4 2 42 42 H 1.09004 * 109.45486 * 65.83539 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5644 -0.0159 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0032 3.6648 8 6 3.8958 -1.8794 4.8519 9 7 3.5682 -1.1874 6.1055 10 6 3.9435 -2.0010 7.2696 11 6 3.5936 -1.2600 8.5343 12 1 3.1377 -0.2825 8.4789 13 6 3.8547 -1.8303 9.7622 14 7 4.4085 -3.0212 9.8297 15 14 3.4204 -0.9120 11.3299 16 1 2.0363 -1.2603 11.7403 17 1 4.3676 -1.2961 12.4071 18 1 3.5118 0.5504 11.0885 19 6 3.9438 -1.6664 2.3611 20 6 3.4828 -0.8165 1.1750 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.0229 0.9711 2.4813 29 1 0.4797 0.0887 2.3948 30 1 1.4988 -1.8243 3.5906 31 1 1.6438 -0.3317 4.5507 32 1 3.9604 -0.0240 3.7577 33 1 3.3552 -2.8248 4.8068 34 1 4.9680 -2.0716 4.8124 35 1 2.5904 -0.9405 6.1375 36 1 3.4029 -2.9471 7.2411 37 1 5.0159 -2.1945 7.2472 38 1 4.5925 -3.4223 10.6935 39 1 3.5056 -2.6617 2.2878 40 1 5.0309 -1.7458 2.3513 41 1 3.7914 -1.2933 0.2448 42 1 3.9323 0.1743 1.2419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = -17.675793 kcal Electronic energy + Delta-G solvation = -17665.281272 eV Core-core repulsion = 15065.126629 eV Total energy + Delta-G solvation = -2600.154644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.61602 -36.46720 -34.17249 -32.34993 -30.82845 -30.41943 -27.41945 -27.11947 -24.85435 -23.29005 -22.11782 -21.04500 -20.19743 -19.11511 -16.53764 -16.13544 -15.17493 -14.91168 -14.68573 -14.43106 -14.30832 -13.76141 -13.72861 -13.26863 -12.89133 -12.57498 -12.33721 -12.18580 -11.92753 -11.80296 -11.49462 -11.27765 -11.19435 -11.07451 -10.80253 -10.74534 -10.72710 -10.29925 -10.20291 -9.95211 -9.72448 -9.10605 -8.45429 -8.29282 -7.22413 -6.00343 -4.02253 3.33433 3.39258 3.44074 3.82936 4.45223 4.66189 4.82289 4.90513 4.95992 5.07263 5.12700 5.31954 5.34020 5.35491 5.41151 5.46920 5.56089 5.61720 5.67675 5.68819 5.78901 5.85027 5.89829 5.94288 6.05937 6.07115 6.16109 6.28717 6.32959 6.37836 6.56575 6.73565 7.10644 7.11367 7.31527 7.47258 7.82144 8.17251 8.45526 8.67262 9.07345 9.62579 11.10856 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046003 B = 0.003992 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.515948 B = 7011.468799 C = 7327.625731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.532 5.532 5 C 0.052 3.948 6 C -0.113 4.113 7 C -0.085 4.085 8 C 0.065 3.935 9 N -0.691 5.691 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.111 4.111 20 C 0.057 3.943 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.327 0.673 36 H -0.015 1.015 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 5.521 -20.054 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.075 4.075 6 C -0.150 4.150 7 C -0.104 4.104 8 C -0.065 4.065 9 N -0.322 5.322 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.149 4.149 20 C -0.071 4.071 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.003 0.997 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.926 5.268 -19.899 21.166 hybrid contribution -0.452 0.504 0.908 1.132 sum -5.378 5.772 -18.992 20.565 Atomic orbital electron populations 1.21878 0.94451 1.02423 1.01558 1.21682 0.95723 0.92318 0.93596 1.22494 1.01543 0.98346 1.02295 1.62185 1.10849 1.50874 1.01708 1.22166 1.00108 0.95595 0.89635 1.21652 0.96076 1.00616 0.96705 1.21217 0.95438 0.99852 0.93888 1.21888 1.00079 0.94362 0.90153 1.60704 1.24089 1.45728 1.01647 1.19546 0.96244 0.90919 0.86677 1.21203 1.40186 1.03487 0.90313 0.92020 1.24998 0.95340 0.95012 0.99289 1.69967 1.43351 1.15466 1.25031 0.86487 0.78065 0.80120 0.82668 1.20729 1.21250 1.19778 1.21609 1.00204 0.99532 0.93567 1.22072 0.87323 0.98741 0.98935 0.92407 0.91852 0.92523 0.90300 0.92201 0.92521 0.92337 0.94697 0.90765 0.91553 0.90991 0.90970 0.96445 0.92020 0.85610 0.99688 0.95526 0.92943 0.91316 0.91610 0.91281 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.99 37.16 0.33 -0.89 16 2 C 0.08 0.70 2.96 -67.72 -0.20 0.50 16 3 C -0.19 -1.63 8.50 37.16 0.32 -1.31 16 4 N -0.53 -5.95 4.64 -226.70 -1.05 -7.00 16 5 C 0.05 0.62 4.63 -3.84 -0.02 0.60 16 6 C -0.11 -1.54 5.10 -26.65 -0.14 -1.67 16 7 C -0.08 -1.24 2.46 -90.49 -0.22 -1.47 16 8 C 0.07 1.19 5.15 -3.83 -0.02 1.17 16 9 N -0.69 -15.22 6.49 -115.06 -0.75 -15.97 16 10 C 0.19 5.22 5.44 -4.97 -0.03 5.19 16 11 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 16 12 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 15 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.11 -1.38 5.38 -26.65 -0.14 -1.52 16 20 C 0.06 0.63 5.02 -3.84 -0.02 0.61 16 21 H 0.06 0.50 6.30 -51.93 -0.33 0.17 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 26 H 0.06 0.51 6.65 -51.93 -0.35 0.16 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.42 6.62 -51.93 -0.34 0.07 16 29 H 0.07 0.82 6.03 -51.93 -0.31 0.50 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.03 6.81 -51.93 -0.35 0.68 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.33 6.86 7.05 -39.29 -0.28 6.58 16 36 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.03 0.38 6.73 -51.93 -0.35 0.03 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -30.07 318.24 -9.52 -39.59 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.68 Total: 0.73 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.55 Total: -12.49 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.06 Total: -49.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.07 -9.52 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.917 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds