Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1 6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2 7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4 8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5 9 9 N 1.46891 * 109.47057 * 294.68419 * 8 7 6 10 10 C 1.46901 * 110.99762 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47397 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00465 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99960 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00345 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47118 * 89.99896 * 15 13 11 17 17 H 1.48496 * 109.47100 * 210.00033 * 15 13 11 18 18 H 1.48499 * 109.47169 * 330.00270 * 15 13 11 19 19 C 1.53121 * 109.15988 * 302.34517 * 7 6 5 20 20 C 1.46850 * 111.00522 * 174.99713 * 4 2 1 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09001 * 109.46345 * 294.17005 * 5 4 2 29 29 H 1.09000 * 109.46432 * 54.14079 * 5 4 2 30 30 H 1.08997 * 109.50332 * 299.23389 * 6 5 4 31 31 H 1.08998 * 109.50497 * 179.11583 * 6 5 4 32 32 H 1.09001 * 109.57729 * 62.28139 * 7 6 5 33 33 H 1.08999 * 109.46648 * 54.68109 * 8 7 6 34 34 H 1.08997 * 109.46565 * 174.67784 * 8 7 6 35 35 H 1.00901 * 111.00734 * 56.04834 * 9 8 7 36 36 H 1.09000 * 109.47496 * 299.99691 * 10 9 8 37 37 H 1.09000 * 109.47525 * 59.99994 * 10 9 8 38 38 H 0.96998 * 120.00440 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.49895 * 297.71693 * 19 7 6 40 40 H 1.08996 * 109.53497 * 177.62117 * 19 7 6 41 41 H 1.08998 * 109.46273 * 305.86025 * 20 4 2 42 42 H 1.09004 * 109.45486 * 65.83539 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5644 -0.0159 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0032 3.6648 8 6 3.8958 -1.8794 4.8519 9 7 3.5682 -1.1874 6.1055 10 6 3.9435 -2.0010 7.2696 11 6 3.5936 -1.2600 8.5343 12 1 3.1377 -0.2825 8.4789 13 6 3.8547 -1.8303 9.7622 14 7 4.4085 -3.0212 9.8297 15 14 3.4204 -0.9120 11.3299 16 1 2.0363 -1.2603 11.7403 17 1 4.3676 -1.2961 12.4071 18 1 3.5118 0.5504 11.0885 19 6 3.9438 -1.6664 2.3611 20 6 3.4828 -0.8165 1.1750 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.0229 0.9711 2.4813 29 1 0.4797 0.0887 2.3948 30 1 1.4988 -1.8243 3.5906 31 1 1.6438 -0.3317 4.5507 32 1 3.9604 -0.0240 3.7577 33 1 3.3552 -2.8248 4.8068 34 1 4.9680 -2.0716 4.8124 35 1 2.5904 -0.9405 6.1375 36 1 3.4029 -2.9471 7.2411 37 1 5.0159 -2.1945 7.2472 38 1 4.5925 -3.4223 10.6935 39 1 3.5056 -2.6617 2.2878 40 1 5.0309 -1.7458 2.3513 41 1 3.7914 -1.2933 0.2448 42 1 3.9323 0.1743 1.2419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = -37.809779 kcal Electronic energy + Delta-G solvation = -17666.154347 eV Core-core repulsion = 15065.126629 eV Total energy + Delta-G solvation = -2601.027719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57747 -37.83171 -35.76361 -34.24919 -31.88571 -31.57086 -28.91926 -28.08052 -26.41085 -24.33800 -23.77743 -22.61195 -21.22562 -20.09932 -18.59584 -17.21559 -16.70533 -16.40882 -15.99679 -15.47186 -15.42811 -15.04398 -14.92497 -14.56261 -14.28182 -13.94817 -13.58989 -13.34051 -13.19053 -12.98255 -12.78942 -12.62861 -12.58779 -12.37192 -12.22224 -12.04121 -11.95791 -11.61433 -11.59738 -11.42461 -11.03076 -10.96608 -10.67255 -9.14966 -9.12656 -8.23405 -6.35294 1.40789 1.42968 1.54881 2.39736 2.99119 3.09636 3.54017 3.82944 3.86578 4.00083 4.09701 4.24320 4.35883 4.40869 4.44348 4.47819 4.61473 4.67565 4.75598 4.76809 4.83041 4.91376 4.93738 4.99662 5.00606 5.07098 5.10925 5.13643 5.22637 5.27294 5.30770 5.37173 5.42571 5.53274 5.61989 6.01116 6.22428 6.28575 6.44195 6.72083 6.88372 7.35941 8.88469 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046003 B = 0.003992 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.515948 B = 7011.468799 C = 7327.625731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.541 5.541 5 C 0.060 3.940 6 C -0.110 4.110 7 C -0.074 4.074 8 C 0.067 3.933 9 N -0.688 5.688 10 C 0.207 3.793 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.264 1.264 19 C -0.106 4.106 20 C 0.061 3.939 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.012 0.988 34 H 0.054 0.946 35 H 0.334 0.666 36 H -0.042 1.042 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 6.833 -20.902 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.266 5.266 5 C -0.068 4.068 6 C -0.148 4.148 7 C -0.093 4.093 8 C -0.063 4.063 9 N -0.319 5.319 10 C 0.079 3.921 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.145 4.145 20 C -0.067 4.067 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.152 0.848 36 H -0.024 1.024 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.712 6.589 -20.780 22.536 hybrid contribution -0.195 0.053 1.111 1.130 sum -5.908 6.642 -19.669 21.584 Atomic orbital electron populations 1.21860 0.93800 1.02205 1.02171 1.21770 0.96244 0.92580 0.92829 1.22444 1.01257 0.97908 1.02613 1.62185 1.10894 1.51398 1.02130 1.22053 1.00663 0.94990 0.89063 1.21599 0.95110 1.00519 0.97572 1.21105 0.96202 0.98733 0.93280 1.21969 0.99594 0.94793 0.89946 1.60594 1.24628 1.45078 1.01588 1.19212 0.94012 0.90343 0.88555 1.21552 1.40716 1.03859 0.91395 0.91689 1.26001 0.94810 0.95852 1.03176 1.70098 1.44064 1.17111 1.26262 0.85286 0.78161 0.78904 0.77659 1.19555 1.20637 1.18797 1.21566 1.00658 0.99328 0.92907 1.22039 0.87374 0.98557 0.98703 0.92826 0.92466 0.90900 0.89501 0.92984 0.92881 0.90911 0.94749 0.89856 0.92319 0.91929 0.91571 0.96967 0.92755 0.84784 1.02391 0.98395 0.92564 0.91806 0.90929 0.89659 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.99 71.98 0.65 -1.43 16 2 C 0.07 1.19 2.96 44.92 0.13 1.33 16 3 C -0.18 -2.75 8.50 71.98 0.61 -2.14 16 4 N -0.54 -11.13 4.64 -871.15 -4.04 -15.17 16 5 C 0.06 1.33 4.63 86.33 0.40 1.73 16 6 C -0.11 -2.96 5.10 30.65 0.16 -2.80 16 7 C -0.07 -2.15 2.46 -10.71 -0.03 -2.17 16 8 C 0.07 2.49 5.15 86.31 0.44 2.93 16 9 N -0.69 -30.97 6.49 -517.94 -3.36 -34.33 16 10 C 0.21 11.57 5.44 85.56 0.47 12.04 16 11 C -0.54 -31.53 9.32 25.60 0.24 -31.29 16 12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 14 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 15 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 19 C -0.11 -2.54 5.38 30.64 0.16 -2.37 16 20 C 0.06 1.23 5.02 86.32 0.43 1.66 16 21 H 0.05 0.82 6.30 -2.39 -0.02 0.81 16 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.09 1.29 8.08 -2.39 -0.02 1.28 16 25 H 0.05 0.86 6.52 -2.39 -0.02 0.85 16 26 H 0.05 0.84 6.65 -2.39 -0.02 0.82 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.03 0.77 6.62 -2.39 -0.02 0.76 16 29 H 0.08 1.70 6.03 -2.39 -0.01 1.69 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.78 6.81 -2.39 -0.02 1.76 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.33 14.23 7.05 -89.69 -0.63 13.59 16 36 H -0.04 -2.50 8.14 -2.39 -0.02 -2.52 16 37 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.47 8.08 -2.39 -0.02 1.46 16 42 H 0.04 0.72 6.73 -2.39 -0.02 0.70 16 Total: -1.00 -64.34 318.24 -0.63 -64.97 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.33 Total: 17.11 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.13 Total: -22.09 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -7.12 Total: -106.93 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -64.34 -0.63 -64.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.162 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds