Wall clock time and date at job start Mon Mar 30 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47217 * 2 1 4 4 N 1.46907 * 109.46598 * 119.99734 * 2 1 3 5 5 C 1.44269 * 110.99959 * 307.54314 * 4 2 1 6 6 C 1.54068 * 111.98125 * 219.31316 * 5 4 2 7 7 C 1.54299 * 112.28824 * 318.91533 * 6 5 4 8 8 C 1.50458 * 113.03140 * 318.30489 * 7 6 5 9 9 C 1.54507 * 108.85660 * 92.15617 * 8 7 6 10 10 H 1.09003 * 108.99781 * 43.30509 * 9 8 7 11 11 N 1.46893 * 109.06142 * 162.26144 * 9 8 7 12 12 C 1.46907 * 110.99610 * 277.08777 * 11 9 8 13 13 C 1.50702 * 109.46616 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00291 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00179 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99735 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47416 * 90.00152 * 17 15 13 19 19 H 1.48503 * 109.47057 * 210.00376 * 17 15 13 20 20 H 1.48499 * 109.47368 * 330.00091 * 17 15 13 21 21 C 1.45866 * 111.58658 * 282.80738 * 9 8 7 22 22 H 1.08997 * 109.46822 * 66.14434 * 1 2 3 23 23 H 1.09001 * 109.47557 * 306.13839 * 1 2 3 24 24 H 1.09002 * 109.46959 * 186.13424 * 1 2 3 25 25 H 1.09001 * 109.47079 * 239.99368 * 2 1 3 26 26 H 1.09004 * 109.46566 * 294.08780 * 3 2 1 27 27 H 1.09000 * 109.46910 * 54.08021 * 3 2 1 28 28 H 1.08994 * 109.47034 * 174.08721 * 3 2 1 29 29 H 1.08994 * 108.97911 * 339.95692 * 5 4 2 30 30 H 1.09004 * 108.97505 * 98.67279 * 5 4 2 31 31 H 1.09000 * 108.91824 * 198.19170 * 6 5 4 32 32 H 1.09001 * 108.85020 * 79.59074 * 6 5 4 33 33 H 1.09000 * 108.77065 * 197.38741 * 7 6 5 34 34 H 1.09000 * 108.76788 * 79.22077 * 7 6 5 35 35 H 1.08997 * 109.57936 * 332.33818 * 8 7 6 36 36 H 1.09007 * 109.57365 * 211.96207 * 8 7 6 37 37 H 1.00900 * 110.99912 * 41.03357 * 11 9 8 38 38 H 1.09004 * 109.47108 * 299.99285 * 12 11 9 39 39 H 1.08996 * 109.47525 * 60.00053 * 12 11 9 40 40 H 0.96997 * 120.00093 * 180.02562 * 16 15 13 41 41 H 1.09002 * 108.79079 * 300.43523 * 21 9 8 42 42 H 1.09006 * 108.78933 * 182.21001 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4181 -0.1481 2.3925 6 6 2.4258 -0.0514 3.5539 7 6 3.3411 -1.2906 3.6391 8 6 2.6048 -2.5830 3.4126 9 6 2.6746 -2.9410 1.9112 10 1 3.6875 -2.7621 1.5505 11 7 2.3496 -4.3634 1.7416 12 6 3.5285 -5.2055 1.9848 13 6 3.1573 -6.6545 1.8013 14 1 2.1467 -6.9230 1.5314 15 6 4.1077 -7.6374 1.9790 16 7 3.7837 -8.9020 1.8193 17 14 5.8556 -7.1729 2.4465 18 1 5.9786 -7.1338 3.9258 19 1 6.7990 -8.1800 1.8978 20 1 6.1789 -5.8357 1.8874 21 6 1.7411 -2.1421 1.1251 22 1 -0.3633 0.4156 -0.9399 23 1 -0.3634 0.6060 0.8299 24 1 -0.3633 -1.0218 0.1098 25 1 1.8934 -0.5139 -0.8899 26 1 1.7657 1.9248 -0.9382 27 1 1.5927 1.9860 0.8323 28 1 3.1248 1.4443 0.1059 29 1 1.0337 0.8479 2.1729 30 1 0.5888 -0.7877 2.6949 31 1 1.8771 0.0477 4.4905 32 1 3.0436 0.8352 3.4113 33 1 3.8029 -1.3184 4.6261 34 1 4.1268 -1.1985 2.8893 35 1 1.5633 -2.4674 3.7124 36 1 3.0696 -3.3758 3.9989 37 1 1.5831 -4.6330 2.3398 38 1 4.3161 -4.9404 1.2794 39 1 3.8843 -5.0473 3.0029 40 1 4.4523 -9.5935 1.9447 41 1 0.7299 -2.3246 1.4888 42 1 1.7995 -2.4578 0.0834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:20 Heat of formation + Delta-G solvation = -22.268559 kcal Electronic energy + Delta-G solvation = -18297.076538 eV Core-core repulsion = 15696.722737 eV Total energy + Delta-G solvation = -2600.353801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86799 -37.86701 -35.60188 -34.49456 -32.51875 -31.57346 -28.71354 -28.00084 -26.48607 -25.60517 -23.21164 -22.08688 -21.39043 -19.76712 -18.96369 -17.40178 -17.03326 -16.25976 -15.97404 -15.59395 -15.42783 -15.17262 -14.96274 -14.55468 -14.03169 -13.97933 -13.72592 -13.45916 -13.11628 -12.88556 -12.84154 -12.67849 -12.57740 -12.21143 -12.00880 -11.88947 -11.75134 -11.59640 -11.55411 -11.40426 -11.33747 -11.11900 -10.82127 -9.23400 -9.06959 -8.31213 -6.35286 1.33153 1.35445 1.47011 2.33053 2.79570 3.02998 3.66377 3.81745 3.97113 4.01153 4.13710 4.19789 4.31196 4.38721 4.40313 4.51155 4.58272 4.73984 4.74375 4.77598 4.79784 4.85851 4.96573 4.99332 5.03887 5.08123 5.11558 5.16796 5.26839 5.31505 5.37630 5.42829 5.44747 5.51461 5.53698 5.95205 6.21315 6.37279 6.56204 6.65950 6.76854 7.29835 8.85626 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.005508 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.793442 B = 5082.486506 C = 5415.973268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 C -0.135 4.135 4 N -0.528 5.528 5 C 0.052 3.948 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.138 4.138 9 C 0.094 3.906 10 H 0.059 0.941 11 N -0.685 5.685 12 C 0.182 3.818 13 C -0.528 4.528 14 H 0.038 0.962 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.949 3.051 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.253 1.253 21 C 0.081 3.919 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.336 0.664 38 H 0.019 0.981 39 H -0.014 1.014 40 H 0.268 0.732 41 H 0.034 0.966 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 23.434 1.134 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.035 4.035 3 C -0.193 4.193 4 N -0.252 5.252 5 C -0.077 4.077 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.178 4.178 9 C -0.016 4.016 10 H 0.077 0.923 11 N -0.315 5.315 12 C 0.053 3.947 13 C -0.566 4.566 14 H 0.056 0.944 15 C -0.188 4.188 16 N -0.587 5.587 17 Si 0.772 3.228 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.177 1.177 21 C -0.047 4.047 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.153 0.847 38 H 0.037 0.963 39 H 0.004 0.996 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.972 23.345 0.455 23.538 hybrid contribution -0.148 -0.866 0.996 1.328 sum -3.120 22.479 1.450 22.741 Atomic orbital electron populations 1.22465 0.96729 1.01552 1.03084 1.21876 0.93306 0.96061 0.92301 1.21799 1.01447 0.93675 1.02339 1.61637 1.58930 1.01843 1.02758 1.21997 0.95353 1.00053 0.90295 1.21914 0.97445 0.97304 0.97376 1.21066 0.98584 0.93624 1.00833 1.21985 1.01132 0.98044 0.96592 1.20517 0.99310 0.87579 0.94199 0.92305 1.60463 1.08987 1.02071 1.60011 1.19695 0.90193 0.91291 0.93546 1.21350 0.97467 0.90983 1.46801 0.94414 1.25843 1.03599 0.94545 0.94767 1.70045 1.36377 1.00857 1.51451 0.85688 0.78931 0.78945 0.79209 1.19026 1.20462 1.17707 1.20667 0.96685 0.87455 0.99850 0.91059 0.91729 0.93855 0.90934 0.90992 0.92039 0.92560 0.89971 0.94933 0.91266 0.91311 0.92540 0.92878 0.91575 0.93755 0.84699 0.96252 0.99635 0.92319 0.94741 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.57 71.98 0.62 -2.52 16 2 C 0.07 1.43 2.85 44.91 0.13 1.56 16 3 C -0.14 -2.09 9.09 71.98 0.65 -1.44 16 4 N -0.53 -12.40 4.19 -886.46 -3.71 -16.11 16 5 C 0.05 1.04 3.82 87.16 0.33 1.37 16 6 C -0.10 -2.00 6.15 31.40 0.19 -1.81 16 7 C -0.10 -2.55 5.42 30.21 0.16 -2.39 16 8 C -0.14 -4.10 4.91 30.28 0.15 -3.95 16 9 C 0.09 3.19 2.20 43.24 0.10 3.29 16 10 H 0.06 2.19 7.23 -2.39 -0.02 2.17 16 11 N -0.69 -28.86 6.15 -504.33 -3.10 -31.97 16 12 C 0.18 8.97 4.27 85.56 0.37 9.33 16 13 C -0.53 -31.34 9.87 25.60 0.25 -31.08 16 14 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 15 C 0.01 0.60 5.47 84.66 0.46 1.06 16 16 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 17 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 21 C 0.08 2.37 3.67 83.94 0.31 2.67 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.01 6.69 -2.39 -0.02 0.99 16 24 H 0.04 0.89 7.04 -2.39 -0.02 0.87 16 25 H 0.07 1.57 7.79 -2.39 -0.02 1.56 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.85 6.60 -2.39 -0.02 0.83 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.36 4.93 -2.39 -0.01 1.35 16 30 H 0.03 0.70 6.51 -2.38 -0.02 0.69 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.46 7.38 -2.39 -0.02 1.44 16 35 H 0.07 1.83 7.15 -2.39 -0.02 1.81 16 36 H 0.04 1.48 7.08 -2.38 -0.02 1.46 16 37 H 0.34 13.88 8.50 -89.69 -0.76 13.12 16 38 H 0.02 0.98 7.11 -2.38 -0.02 0.97 16 39 H -0.01 -0.67 6.58 -2.39 -0.02 -0.69 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.03 1.00 6.79 -2.39 -0.02 0.98 16 42 H 0.06 1.89 7.59 -2.38 -0.02 1.87 16 Total: -1.00 -64.88 308.99 -0.75 -65.63 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.16 Total: 19.12 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.72 Total: -23.91 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -6.52 Total: -107.82 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -64.88 -0.75 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.358 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds