Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53002 * 109.47315 * 2 1 4 4 N 1.46901 * 109.47181 * 119.99944 * 2 1 3 5 5 C 1.47444 * 111.00063 * 64.25395 * 4 2 1 6 6 C 1.54318 * 107.23238 * 123.25993 * 5 4 2 7 7 C 1.55259 * 103.08599 * 22.20379 * 6 5 4 8 8 C 1.47850 * 111.00051 * 185.09436 * 4 2 1 9 9 H 1.08999 * 110.37327 * 332.57788 * 8 4 2 10 10 C 1.53005 * 110.37018 * 94.80523 * 8 4 2 11 11 N 1.46903 * 109.47208 * 58.24809 * 10 8 4 12 12 C 1.46898 * 110.99926 * 284.61132 * 11 10 8 13 13 C 1.46894 * 111.00131 * 160.65060 * 11 10 8 14 14 C 1.50699 * 109.47424 * 189.99800 * 13 11 10 15 15 H 1.08005 * 119.99563 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00493 * 179.72815 * 14 13 11 17 17 N 1.31516 * 120.00320 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99790 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46932 * 90.00503 * 18 16 14 20 20 H 1.48503 * 109.47298 * 210.00027 * 18 16 14 21 21 H 1.48500 * 109.47437 * 330.00273 * 18 16 14 22 22 H 1.09002 * 109.47469 * 60.00014 * 1 2 3 23 23 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47682 * 299.99903 * 1 2 3 25 25 H 1.09003 * 109.47682 * 240.00097 * 2 1 3 26 26 H 1.09004 * 109.47324 * 186.14655 * 3 2 1 27 27 H 1.08997 * 109.46764 * 306.14462 * 3 2 1 28 28 H 1.08996 * 109.46958 * 66.14229 * 3 2 1 29 29 H 1.09003 * 109.88638 * 242.66697 * 5 4 2 30 30 H 1.08999 * 109.88766 * 3.85160 * 5 4 2 31 31 H 1.09001 * 110.70549 * 140.66555 * 6 5 4 32 32 H 1.09004 * 110.70368 * 263.90084 * 6 5 4 33 33 H 1.09007 * 111.08552 * 206.38450 * 7 6 5 34 34 H 1.08994 * 110.94428 * 82.53392 * 7 6 5 35 35 H 1.08990 * 109.47277 * 298.24731 * 10 8 4 36 36 H 1.09004 * 109.47036 * 178.24726 * 10 8 4 37 37 H 1.09005 * 109.46920 * 308.41176 * 12 11 10 38 38 H 1.09001 * 109.47490 * 68.41047 * 12 11 10 39 39 H 1.08998 * 109.46919 * 188.42112 * 12 11 10 40 40 H 1.09006 * 109.46893 * 70.00073 * 13 11 10 41 41 H 1.08993 * 109.47342 * 310.00152 * 13 11 10 42 42 H 0.97000 * 120.00026 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6320 -2.1150 1.1836 6 6 2.9286 -2.9435 1.3008 7 6 3.9269 -1.9445 1.9458 8 6 3.4924 -0.6070 1.2965 9 1 3.9328 -0.5059 0.3045 10 6 3.9002 0.5723 2.1819 11 7 3.3069 0.4111 3.5161 12 6 1.8724 0.7268 3.4960 13 6 4.0129 1.2319 4.5089 14 6 3.5446 0.8606 5.8923 15 1 2.7975 0.0913 6.0211 16 6 4.0742 1.4985 6.9939 17 7 3.6658 1.1740 8.2012 18 14 5.3728 2.8227 6.7716 19 1 4.7123 4.1455 6.6330 20 1 6.2705 2.8392 7.9545 21 1 6.1681 2.5362 5.5507 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1244 1.4445 -0.1100 27 1 1.5896 1.9870 -0.8299 28 1 1.7692 1.9236 0.9398 29 1 0.9768 -2.3302 2.0277 30 1 1.1246 -2.3506 0.2481 31 1 2.7764 -3.8082 1.9467 32 1 3.2783 -3.2533 0.3160 33 1 4.9551 -2.1913 1.6807 34 1 3.8014 -1.9122 3.0280 35 1 3.5450 1.5013 1.7362 36 1 4.9864 0.6030 2.2686 37 1 1.7216 1.7024 3.0338 38 1 1.3411 -0.0329 2.9226 39 1 1.4902 0.7453 4.5166 40 1 3.8026 2.2855 4.3248 41 1 5.0856 1.0562 4.4291 42 1 4.0387 1.6226 8.9762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = 17.327884 kcal Electronic energy + Delta-G solvation = -18796.993825 eV Core-core repulsion = 16198.357055 eV Total energy + Delta-G solvation = -2598.636770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62985 -35.97824 -34.25499 -32.40885 -30.33269 -29.00481 -27.51681 -26.91085 -25.56751 -23.39671 -21.35031 -20.59216 -19.92319 -19.27393 -16.67582 -16.14373 -15.62495 -14.68299 -14.39828 -14.14344 -13.98242 -13.50174 -13.07147 -12.98250 -12.65125 -12.37881 -12.21198 -11.97939 -11.79704 -11.57243 -11.12547 -11.05482 -10.93408 -10.90360 -10.71434 -10.58471 -10.55828 -10.36748 -10.16698 -9.94892 -9.70454 -9.16139 -8.48709 -7.84746 -7.02219 -5.96339 -3.91765 3.33582 3.40787 3.43569 4.05706 4.49755 4.81153 4.86646 5.01044 5.12068 5.18303 5.24083 5.36356 5.38986 5.59113 5.63474 5.67934 5.69996 5.82993 5.88804 5.91375 5.95835 6.02564 6.14162 6.20627 6.21725 6.31807 6.36463 6.39410 6.63747 6.71900 6.84788 7.05922 7.12542 7.25800 7.34962 7.39683 7.75488 8.16932 8.35359 8.81640 9.14551 9.66911 11.17129 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030745 B = 0.006558 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.509969 B = 4268.755062 C = 4484.790753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 C -0.150 4.150 4 N -0.504 5.504 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.119 4.119 8 C 0.082 3.918 9 H 0.045 0.955 10 C 0.060 3.940 11 N -0.516 5.516 12 C 0.032 3.968 13 C 0.158 3.842 14 C -0.500 4.500 15 H 0.081 0.919 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.032 0.968 36 H 0.062 0.938 37 H -0.005 1.005 38 H 0.093 0.907 39 H 0.060 0.940 40 H -0.022 1.022 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 -3.911 -18.011 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.208 4.208 4 N -0.230 5.230 5 C -0.082 4.082 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.026 4.026 9 H 0.063 0.937 10 C -0.070 4.070 11 N -0.239 5.239 12 C -0.116 4.116 13 C 0.032 3.968 14 C -0.539 4.539 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.193 1.193 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.014 0.986 38 H 0.111 0.889 39 H 0.079 0.921 40 H -0.005 1.005 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.070 -4.103 -17.266 18.010 hybrid contribution 1.035 1.311 -0.949 1.921 sum -2.035 -2.792 -18.214 18.539 Atomic orbital electron populations 1.21857 0.94534 1.01715 1.01961 1.21753 0.95628 0.95173 0.91070 1.22078 1.00799 0.95563 1.02341 1.63818 1.11380 1.11710 1.36042 1.22765 0.97239 0.87485 1.00748 1.22780 0.96213 0.98886 1.00162 1.22728 0.97265 0.92302 1.03422 1.22574 0.86867 0.96707 0.96497 0.93713 1.22190 0.98221 0.95217 0.91324 1.61787 1.03285 1.55834 1.03033 1.22643 0.89282 0.98104 1.01593 1.20216 0.94142 0.90142 0.92333 1.21078 1.23579 1.21205 0.87999 0.90132 1.24905 0.96566 0.96844 0.95212 1.69902 1.43841 1.42837 0.97797 0.86871 0.82441 0.82677 0.77755 1.20539 1.21321 1.19296 0.92828 0.92837 0.91561 0.94942 0.92614 0.92871 0.91132 0.90477 0.93439 0.91062 0.92632 0.92031 0.87777 0.95014 0.92003 0.98606 0.88884 0.92078 1.00476 0.95961 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.13 37.15 0.34 -1.18 16 2 C 0.07 0.86 2.23 -67.72 -0.15 0.71 16 3 C -0.15 -1.81 7.67 37.16 0.29 -1.52 16 4 N -0.50 -6.91 1.44 -215.48 -0.31 -7.22 16 5 C 0.05 0.56 6.13 -2.84 -0.02 0.55 16 6 C -0.14 -1.72 6.94 -24.84 -0.17 -1.89 16 7 C -0.12 -1.72 6.45 -24.53 -0.16 -1.88 16 8 C 0.08 1.19 2.19 -66.18 -0.14 1.04 16 9 H 0.04 0.60 7.35 -51.93 -0.38 0.22 16 10 C 0.06 1.04 4.71 -3.82 -0.02 1.02 16 11 N -0.52 -10.94 3.67 -244.37 -0.90 -11.84 16 12 C 0.03 0.65 8.87 60.06 0.53 1.19 16 13 C 0.16 3.95 3.77 -4.98 -0.02 3.94 16 14 C -0.50 -14.54 8.89 -34.44 -0.31 -14.84 16 15 H 0.08 2.55 7.45 -52.48 -0.39 2.16 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 18 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.54 6.77 -51.93 -0.35 0.19 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 26 H 0.05 0.68 6.11 -51.93 -0.32 0.36 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.99 6.32 -51.93 -0.33 0.66 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.52 6.62 -51.93 -0.34 0.18 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.10 1.85 7.21 -51.93 -0.37 1.47 16 35 H 0.03 0.54 4.87 -51.93 -0.25 0.29 16 36 H 0.06 1.08 7.74 -51.93 -0.40 0.67 16 37 H 0.00 -0.09 6.83 -51.93 -0.35 -0.45 16 38 H 0.09 1.72 5.39 -51.93 -0.28 1.44 16 39 H 0.06 1.42 6.62 -51.93 -0.34 1.07 16 40 H -0.02 -0.57 7.56 -51.93 -0.39 -0.96 16 41 H 0.02 0.56 6.87 -51.93 -0.36 0.21 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -30.27 306.88 -7.83 -38.10 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.42 Total: -2.58 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.43 Total: -46.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.27 -7.83 -38.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.425 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds