Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53002 * 109.47315 * 2 1 4 4 N 1.46901 * 109.47181 * 119.99944 * 2 1 3 5 5 C 1.47444 * 111.00063 * 64.25395 * 4 2 1 6 6 C 1.54318 * 107.23238 * 123.25993 * 5 4 2 7 7 C 1.55259 * 103.08599 * 22.20379 * 6 5 4 8 8 C 1.47850 * 111.00051 * 185.09436 * 4 2 1 9 9 H 1.08999 * 110.37327 * 332.57788 * 8 4 2 10 10 C 1.53005 * 110.37018 * 94.80523 * 8 4 2 11 11 N 1.46903 * 109.47208 * 58.24809 * 10 8 4 12 12 C 1.46898 * 110.99926 * 284.61132 * 11 10 8 13 13 C 1.46894 * 111.00131 * 160.65060 * 11 10 8 14 14 C 1.50699 * 109.47424 * 189.99800 * 13 11 10 15 15 H 1.08005 * 119.99563 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00493 * 179.72815 * 14 13 11 17 17 N 1.31516 * 120.00320 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99790 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46932 * 90.00503 * 18 16 14 20 20 H 1.48503 * 109.47298 * 210.00027 * 18 16 14 21 21 H 1.48500 * 109.47437 * 330.00273 * 18 16 14 22 22 H 1.09002 * 109.47469 * 60.00014 * 1 2 3 23 23 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47682 * 299.99903 * 1 2 3 25 25 H 1.09003 * 109.47682 * 240.00097 * 2 1 3 26 26 H 1.09004 * 109.47324 * 186.14655 * 3 2 1 27 27 H 1.08997 * 109.46764 * 306.14462 * 3 2 1 28 28 H 1.08996 * 109.46958 * 66.14229 * 3 2 1 29 29 H 1.09003 * 109.88638 * 242.66697 * 5 4 2 30 30 H 1.08999 * 109.88766 * 3.85160 * 5 4 2 31 31 H 1.09001 * 110.70549 * 140.66555 * 6 5 4 32 32 H 1.09004 * 110.70368 * 263.90084 * 6 5 4 33 33 H 1.09007 * 111.08552 * 206.38450 * 7 6 5 34 34 H 1.08994 * 110.94428 * 82.53392 * 7 6 5 35 35 H 1.08990 * 109.47277 * 298.24731 * 10 8 4 36 36 H 1.09004 * 109.47036 * 178.24726 * 10 8 4 37 37 H 1.09005 * 109.46920 * 308.41176 * 12 11 10 38 38 H 1.09001 * 109.47490 * 68.41047 * 12 11 10 39 39 H 1.08998 * 109.46919 * 188.42112 * 12 11 10 40 40 H 1.09006 * 109.46893 * 70.00073 * 13 11 10 41 41 H 1.08993 * 109.47342 * 310.00152 * 13 11 10 42 42 H 0.97000 * 120.00026 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.6320 -2.1150 1.1836 6 6 2.9286 -2.9435 1.3008 7 6 3.9269 -1.9445 1.9458 8 6 3.4924 -0.6070 1.2965 9 1 3.9328 -0.5059 0.3045 10 6 3.9002 0.5723 2.1819 11 7 3.3069 0.4111 3.5161 12 6 1.8724 0.7268 3.4960 13 6 4.0129 1.2319 4.5089 14 6 3.5446 0.8606 5.8923 15 1 2.7975 0.0913 6.0211 16 6 4.0742 1.4985 6.9939 17 7 3.6658 1.1740 8.2012 18 14 5.3728 2.8227 6.7716 19 1 4.7123 4.1455 6.6330 20 1 6.2705 2.8392 7.9545 21 1 6.1681 2.5362 5.5507 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1244 1.4445 -0.1100 27 1 1.5896 1.9870 -0.8299 28 1 1.7692 1.9236 0.9398 29 1 0.9768 -2.3302 2.0277 30 1 1.1246 -2.3506 0.2481 31 1 2.7764 -3.8082 1.9467 32 1 3.2783 -3.2533 0.3160 33 1 4.9551 -2.1913 1.6807 34 1 3.8014 -1.9122 3.0280 35 1 3.5450 1.5013 1.7362 36 1 4.9864 0.6030 2.2686 37 1 1.7216 1.7024 3.0338 38 1 1.3411 -0.0329 2.9226 39 1 1.4902 0.7453 4.5166 40 1 3.8026 2.2855 4.3248 41 1 5.0856 1.0562 4.4291 42 1 4.0387 1.6226 8.9762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -1.095444 kcal Electronic energy + Delta-G solvation = -18797.792721 eV Core-core repulsion = 16198.357055 eV Total energy + Delta-G solvation = -2599.435666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75251 -37.62696 -35.24130 -34.58347 -31.73447 -30.04509 -29.44059 -27.91270 -26.99431 -25.06940 -22.60997 -22.05279 -21.11326 -20.50401 -18.87054 -17.31694 -16.76845 -16.31642 -15.99251 -15.68164 -15.26166 -14.88600 -14.44919 -14.24494 -14.03019 -13.94142 -13.64955 -13.28691 -12.93113 -12.79800 -12.68949 -12.51503 -12.36720 -12.10690 -12.09241 -11.91637 -11.75161 -11.69251 -11.65940 -11.44713 -11.29294 -11.25658 -10.76627 -9.02228 -8.64569 -8.25716 -6.27531 1.33562 1.35375 1.46656 2.35718 3.03787 3.07305 3.45228 3.79583 3.94219 4.09004 4.24029 4.24555 4.41509 4.46545 4.49844 4.63369 4.68162 4.72243 4.79351 4.85434 4.86721 4.95448 4.98228 5.02218 5.09111 5.11216 5.14178 5.16709 5.22003 5.29598 5.40263 5.48229 5.57160 5.64981 5.71460 6.09732 6.21661 6.40055 6.57458 6.79279 6.84582 7.36011 8.91264 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030745 B = 0.006558 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.509969 B = 4268.755062 C = 4484.790753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 C -0.147 4.147 4 N -0.525 5.525 5 C 0.046 3.954 6 C -0.133 4.133 7 C -0.122 4.122 8 C 0.089 3.911 9 H 0.068 0.932 10 C 0.059 3.941 11 N -0.525 5.525 12 C 0.047 3.953 13 C 0.169 3.831 14 C -0.508 4.508 15 H 0.036 0.964 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.250 1.250 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.000 1.000 38 H 0.113 0.887 39 H 0.020 0.980 40 H -0.025 1.025 41 H 0.025 0.975 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 -3.544 -20.917 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 C -0.205 4.205 4 N -0.251 5.251 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.160 4.160 8 C -0.019 4.019 9 H 0.085 0.915 10 C -0.070 4.070 11 N -0.249 5.249 12 C -0.101 4.101 13 C 0.042 3.958 14 C -0.547 4.547 15 H 0.054 0.946 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.174 1.174 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.019 0.981 38 H 0.131 0.869 39 H 0.039 0.961 40 H -0.007 1.007 41 H 0.043 0.957 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.225 -3.749 -20.199 20.664 hybrid contribution 0.681 1.131 -0.055 1.322 sum -1.544 -2.618 -20.255 20.481 Atomic orbital electron populations 1.21828 0.93720 1.02125 1.01992 1.21818 0.96232 0.94815 0.90685 1.22040 1.00849 0.95787 1.01804 1.63624 1.10886 1.12801 1.37756 1.22749 0.97342 0.86779 1.01261 1.22738 0.95156 0.98196 1.01033 1.22650 0.98789 0.93452 1.01108 1.22440 0.87686 0.95141 0.96651 0.91454 1.22314 0.98091 0.97133 0.89466 1.61731 1.03377 1.55077 1.04688 1.22525 0.89133 0.99097 0.99324 1.19976 0.94341 0.90313 0.91209 1.21283 1.22642 1.20114 0.90627 0.94609 1.25850 0.99138 0.99544 0.94632 1.70059 1.45630 1.44582 0.98897 0.85711 0.79393 0.79221 0.78550 1.19609 1.20550 1.17367 0.91035 0.92250 0.93294 0.93469 0.92753 0.90935 0.93553 0.91949 0.91284 0.90936 0.90443 0.90811 0.91745 0.94331 0.91931 0.98123 0.86903 0.96078 1.00731 0.95700 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.13 71.98 0.66 -1.95 16 2 C 0.07 1.51 2.23 44.91 0.10 1.61 16 3 C -0.15 -3.17 7.67 71.98 0.55 -2.62 16 4 N -0.53 -13.37 1.44 -835.63 -1.20 -14.57 16 5 C 0.05 1.05 6.13 86.65 0.53 1.58 16 6 C -0.13 -2.91 6.94 31.82 0.22 -2.69 16 7 C -0.12 -3.35 6.45 32.02 0.21 -3.15 16 8 C 0.09 2.40 2.19 45.38 0.10 2.50 16 9 H 0.07 1.56 7.35 -2.39 -0.02 1.55 16 10 C 0.06 1.96 4.71 86.30 0.41 2.37 16 11 N -0.53 -22.50 3.67 -927.06 -3.40 -25.90 16 12 C 0.05 1.98 8.87 127.69 1.13 3.11 16 13 C 0.17 8.50 3.77 85.56 0.32 8.82 16 14 C -0.51 -30.63 8.89 25.60 0.23 -30.40 16 15 H 0.04 2.41 7.45 -2.91 -0.02 2.39 16 16 C 0.00 0.30 5.47 84.65 0.46 0.76 16 17 N -0.95 -61.16 13.96 21.45 0.30 -60.87 16 18 Si 0.95 45.64 27.47 68.60 1.88 47.53 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 1.04 6.77 -2.39 -0.02 1.02 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 26 H 0.05 1.17 6.11 -2.38 -0.01 1.15 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.22 6.32 -2.39 -0.02 1.21 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.28 6.62 -2.39 -0.02 1.26 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 2.31 7.21 -2.39 -0.02 2.29 16 35 H 0.04 1.25 4.87 -2.39 -0.01 1.24 16 36 H 0.06 2.07 7.74 -2.38 -0.02 2.06 16 37 H 0.00 0.01 6.83 -2.38 -0.02 0.00 16 38 H 0.11 4.23 5.39 -2.39 -0.01 4.22 16 39 H 0.02 1.01 6.62 -2.39 -0.02 1.00 16 40 H -0.02 -1.26 7.56 -2.38 -0.02 -1.28 16 41 H 0.02 1.24 6.87 -2.39 -0.02 1.22 16 42 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -67.16 306.88 3.41 -63.76 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.91 Total: 10.11 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.92 Total: -20.05 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -4.31 Total: -101.34 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -67.16 3.41 -63.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.660 kcal (2) G-P(sol) polarization free energy of solvation -67.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds