Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 N 1.46905 * 109.47242 * 119.99735 * 2 1 3 5 5 C 1.47842 * 110.99850 * 54.15905 * 4 2 1 6 6 C 1.54906 * 104.79727 * 146.36700 * 5 4 2 7 7 C 1.55141 * 101.65182 * 322.92946 * 6 5 4 8 8 H 1.08995 * 110.85456 * 277.20484 * 7 6 5 9 9 C 1.52998 * 110.70731 * 154.03329 * 7 6 5 10 10 N 1.46904 * 109.46644 * 71.40143 * 9 7 6 11 11 C 1.46902 * 111.00069 * 66.04668 * 10 9 7 12 12 C 1.46899 * 110.99886 * 189.99627 * 10 9 7 13 13 C 1.50703 * 109.47180 * 170.00074 * 12 10 9 14 14 H 1.07994 * 119.99603 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99838 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 C 1.47435 * 111.00204 * 175.00185 * 4 2 1 22 22 H 1.09004 * 109.46853 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47430 * 299.99644 * 1 2 3 24 24 H 1.08999 * 109.47164 * 60.00747 * 1 2 3 25 25 H 1.08998 * 109.47515 * 239.99573 * 2 1 3 26 26 H 1.09004 * 109.47105 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47173 * 300.00046 * 3 2 1 28 28 H 1.09003 * 109.47574 * 59.99839 * 3 2 1 29 29 H 1.09000 * 110.37341 * 265.19478 * 5 4 2 30 30 H 1.09001 * 110.37470 * 27.42505 * 5 4 2 31 31 H 1.09002 * 110.99059 * 204.83889 * 6 5 4 32 32 H 1.09000 * 110.99001 * 81.02057 * 6 5 4 33 33 H 1.08994 * 109.47597 * 311.40515 * 9 7 6 34 34 H 1.09002 * 109.47064 * 191.39829 * 9 7 6 35 35 H 1.08997 * 109.47274 * 183.95190 * 11 10 9 36 36 H 1.08999 * 109.47167 * 303.95879 * 11 10 9 37 37 H 1.09004 * 109.46902 * 63.95344 * 11 10 9 38 38 H 1.09005 * 109.47198 * 50.00271 * 12 10 9 39 39 H 1.08998 * 109.47329 * 290.00218 * 12 10 9 40 40 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 41 41 H 1.09002 * 109.88958 * 117.33587 * 21 4 2 42 42 H 1.08999 * 110.02559 * 356.22498 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4343 -2.0459 1.3060 6 6 2.5464 -2.9081 1.9536 7 6 3.8224 -2.3186 1.2968 8 1 3.9903 -2.7569 0.3131 9 6 5.0414 -2.5306 2.1968 10 7 5.4074 -3.9533 2.1981 11 6 5.8742 -4.3781 0.8716 12 6 6.4171 -4.2361 3.2269 13 6 6.5875 -5.7269 3.3672 14 1 6.0043 -6.3971 2.7532 15 6 7.4879 -6.2350 4.2794 16 7 8.1984 -5.4188 5.0267 17 14 7.6996 -8.0828 4.4528 18 1 6.7911 -8.7764 3.5046 19 1 7.3694 -8.4908 5.8420 20 1 9.1061 -8.4506 4.1500 21 6 3.4886 -0.8169 1.1751 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 0.5494 -2.0276 1.9422 30 1 1.1821 -2.4291 0.3173 31 1 2.4249 -3.9601 1.6957 32 1 2.5657 -2.7725 3.0350 33 1 4.8022 -2.2161 3.2126 34 1 5.8774 -1.9407 1.8210 35 1 6.0718 -5.4499 0.8820 36 1 5.1077 -4.1571 0.1288 37 1 6.7894 -3.8423 0.6198 38 1 6.0931 -3.8163 4.1792 39 1 7.3672 -3.7876 2.9366 40 1 8.0887 -4.4592 4.9364 41 1 3.9209 -0.2718 2.0143 42 1 3.8809 -0.4247 0.2369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -5.648882 kcal Electronic energy + Delta-G solvation = -17833.302699 eV Core-core repulsion = 15233.669582 eV Total energy + Delta-G solvation = -2599.633117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49699 -36.81395 -34.36801 -32.65789 -30.00806 -29.28124 -27.16505 -26.78677 -25.73135 -23.28214 -21.98361 -20.95636 -19.99622 -19.50671 -16.72208 -16.33785 -15.85426 -14.85131 -14.45450 -14.29552 -13.74547 -13.71493 -13.45280 -13.24296 -12.79740 -12.43835 -12.29164 -12.23357 -11.90756 -11.61898 -11.34363 -11.17814 -11.04329 -11.00494 -10.90428 -10.79606 -10.56181 -10.54747 -10.40880 -10.11621 -9.99399 -8.64637 -8.35583 -8.29813 -7.29793 -6.35197 -4.03681 3.45280 3.49464 3.63217 3.90892 4.50464 4.61859 4.77983 4.82836 4.91510 5.04371 5.18129 5.31790 5.36940 5.41981 5.46278 5.51909 5.60096 5.65712 5.67599 5.75932 5.79287 5.94934 6.02053 6.03990 6.07329 6.12342 6.18233 6.22651 6.33275 6.42546 6.58530 6.69212 6.98960 7.01515 7.10797 7.13508 7.81913 8.01028 8.34833 8.61507 8.89356 9.67210 11.04144 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.053547 B = 0.004253 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.777735 B = 6581.609793 C = 6747.485750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.144 4.144 4 N -0.525 5.525 5 C 0.041 3.959 6 C -0.108 4.108 7 C -0.104 4.104 8 H 0.073 0.927 9 C 0.066 3.934 10 N -0.531 5.531 11 C 0.038 3.962 12 C 0.182 3.818 13 C -0.586 4.586 14 H 0.057 0.943 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 1.078 2.922 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.288 1.288 21 C 0.047 3.953 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.019 0.981 39 H -0.021 1.021 40 H 0.267 0.733 41 H 0.076 0.924 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 10.260 -10.548 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 C -0.201 4.201 4 N -0.250 5.250 5 C -0.087 4.087 6 C -0.146 4.146 7 C -0.123 4.123 8 H 0.091 0.909 9 C -0.063 4.063 10 N -0.255 5.255 11 C -0.111 4.111 12 C 0.056 3.944 13 C -0.625 4.625 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.553 5.553 17 Si 0.906 3.094 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.215 1.215 21 C -0.081 4.081 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.037 0.963 39 H -0.004 1.004 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.677 9.128 -9.188 18.123 hybrid contribution 0.216 1.269 -1.773 2.190 sum -12.461 10.396 -10.961 19.583 Atomic orbital electron populations 1.21886 0.94483 1.02021 1.01983 1.21787 0.95562 0.95287 0.91218 1.21855 1.01107 0.95317 1.01855 1.63684 1.05946 1.17939 1.37431 1.23081 0.98406 0.87839 0.99347 1.22600 0.92373 0.99080 1.00590 1.22405 0.96028 0.94372 0.99520 0.90911 1.22032 0.94765 0.90570 0.98961 1.62000 1.43695 1.14517 1.05310 1.22232 0.96444 1.01887 0.90487 1.19844 0.87335 0.97761 0.89431 1.22027 1.25105 0.91076 1.24290 0.92425 1.25855 0.93138 1.07066 0.93016 1.70734 1.40318 1.04892 1.39383 0.83422 0.75936 0.73923 0.76097 1.21468 1.21335 1.21486 1.22852 0.87830 0.96354 1.01088 0.92569 0.91819 0.92489 0.94453 0.92661 0.92558 0.91826 0.90585 0.93996 0.90481 0.90622 0.91263 0.96209 0.90820 0.93565 0.97258 0.96261 1.00360 0.92291 0.90523 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.97 37.16 0.33 -0.98 16 2 C 0.07 0.73 2.24 -67.71 -0.15 0.58 16 3 C -0.14 -1.34 9.15 37.16 0.34 -1.00 16 4 N -0.52 -6.50 5.03 -223.30 -1.12 -7.62 16 5 C 0.04 0.50 5.33 -2.30 -0.01 0.48 16 6 C -0.11 -1.57 6.44 -24.59 -0.16 -1.72 16 7 C -0.10 -1.54 2.90 -88.80 -0.26 -1.80 16 8 H 0.07 1.10 6.24 -51.93 -0.32 0.77 16 9 C 0.07 1.19 4.25 -3.82 -0.02 1.18 16 10 N -0.53 -11.62 4.67 -244.37 -1.14 -12.76 16 11 C 0.04 0.76 9.18 60.07 0.55 1.31 16 12 C 0.18 4.80 4.03 -4.98 -0.02 4.78 16 13 C -0.59 -16.86 8.52 -34.44 -0.29 -17.15 16 14 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 15 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 16 N -0.92 -28.28 13.65 55.43 0.76 -27.53 16 17 Si 1.08 25.68 29.90 -169.99 -5.08 20.59 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.05 0.61 5.76 -2.84 -0.02 0.60 16 22 H 0.06 0.50 6.74 -51.93 -0.35 0.15 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 26 H 0.05 0.53 6.82 -51.93 -0.35 0.18 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.49 7.32 -51.93 -0.38 0.11 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 33 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 34 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.07 1.58 6.86 -51.93 -0.36 1.23 16 36 H 0.05 0.78 6.18 -51.93 -0.32 0.46 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.02 0.54 7.80 -51.93 -0.40 0.13 16 39 H -0.02 -0.59 7.99 -51.93 -0.41 -1.01 16 40 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 41 H 0.08 1.04 7.82 -51.93 -0.41 0.63 16 42 H 0.05 0.62 6.67 -51.93 -0.35 0.28 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -30.33 320.50 -9.30 -39.63 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.74 Total: -3.70 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.20 Total: -13.45 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.51 Total: -47.91 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.33 -9.30 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.978 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds