Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46612 * 2 1 4 4 N 1.46901 * 109.47353 * 119.99776 * 2 1 3 5 5 C 1.47631 * 110.99751 * 291.65842 * 4 2 1 6 6 C 1.50825 * 108.03708 * 150.32964 * 5 4 2 7 7 C 1.53806 * 111.62133 * 95.05713 * 6 5 4 8 8 C 1.54173 * 111.97429 * 319.04371 * 7 6 5 9 9 C 1.50697 * 108.85941 * 79.18502 * 8 7 6 10 10 H 1.07994 * 120.00293 * 202.75275 * 9 8 7 11 11 C 1.37877 * 119.99643 * 22.75224 * 9 8 7 12 12 N 1.31518 * 119.99931 * 225.29031 * 11 9 8 13 13 Si 1.86797 * 120.00249 * 45.28806 * 11 9 8 14 14 H 1.48499 * 109.46877 * 87.79173 * 13 11 9 15 15 H 1.48499 * 109.47641 * 207.79421 * 13 11 9 16 16 H 1.48500 * 109.47113 * 327.79671 * 13 11 9 17 17 C 1.53003 * 108.85365 * 197.67678 * 8 7 6 18 18 N 1.46896 * 109.47201 * 305.99368 * 17 8 7 19 19 C 1.50759 * 112.61033 * 318.48027 * 8 7 6 20 20 C 1.39771 * 111.00208 * 162.75442 * 4 2 1 21 21 H 1.08996 * 109.47129 * 65.73281 * 1 2 3 22 22 H 1.09008 * 109.47037 * 185.72784 * 1 2 3 23 23 H 1.09003 * 109.47533 * 305.73050 * 1 2 3 24 24 H 1.09002 * 109.47351 * 240.00194 * 2 1 3 25 25 H 1.09008 * 109.46582 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46927 * 299.99526 * 3 2 1 27 27 H 1.09002 * 109.47104 * 60.00043 * 3 2 1 28 28 H 1.08993 * 109.75180 * 30.69466 * 5 4 2 29 29 H 1.09001 * 109.79056 * 269.98717 * 5 4 2 30 30 H 1.09004 * 109.04480 * 334.50706 * 6 5 4 31 31 H 1.08994 * 108.99136 * 215.57220 * 6 5 4 32 32 H 1.08997 * 108.98028 * 198.40354 * 7 6 5 33 33 H 1.08994 * 108.91412 * 79.63778 * 7 6 5 34 34 H 0.97003 * 119.99638 * 179.97438 * 12 11 9 35 35 H 1.09000 * 109.47294 * 66.00062 * 17 8 7 36 36 H 1.09004 * 109.46642 * 185.99426 * 17 8 7 37 37 H 1.00898 * 111.00411 * 179.11952 * 18 17 8 38 38 H 1.00900 * 111.00127 * 303.07917 * 18 17 8 39 39 H 1.08995 * 109.54503 * 212.87691 * 19 8 7 40 40 H 1.09001 * 109.53861 * 333.14868 * 19 8 7 41 41 H 1.09008 * 109.02153 * 309.73144 * 20 4 2 42 42 H 1.09007 * 109.02534 * 68.62096 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.7165 0.0828 2.4187 6 6 1.5417 -0.8891 3.5587 7 6 2.8453 -1.0691 4.3549 8 6 4.0787 -1.1445 3.4330 9 6 4.4541 0.2513 3.0065 10 1 5.0274 0.4045 2.1042 11 6 4.0657 1.3328 3.7684 12 7 3.5554 2.3969 3.1879 13 14 4.2641 1.2867 5.6253 14 1 5.6191 1.7721 5.9904 15 1 3.2397 2.1586 6.2544 16 1 4.0912 -0.1072 6.1071 17 6 5.2446 -1.7521 4.2156 18 7 5.4522 -0.9909 5.4546 19 6 3.8316 -1.9781 2.2013 20 6 3.3616 -1.0559 1.0553 21 1 -0.3633 0.4223 -0.9368 22 1 -0.3633 -1.0226 0.1026 23 1 -0.3634 0.6001 0.8342 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 0.7975 0.6509 2.2749 29 1 2.5395 0.7631 2.6377 30 1 1.2330 -1.8549 3.1585 31 1 0.7653 -0.5164 4.2267 32 1 2.7811 -1.9884 4.9370 33 1 2.9627 -0.2261 5.0357 34 1 3.2818 3.1576 3.7240 35 1 5.0165 -2.7895 4.4603 36 1 6.1492 -1.7125 3.6088 37 1 6.2083 -1.3815 5.9967 38 1 5.6159 -0.0151 5.2564 39 1 4.7539 -2.4807 1.9102 40 1 3.0612 -2.7199 2.4117 41 1 3.4888 -1.5761 0.1058 42 1 3.9753 -0.1550 1.0512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = 70.316777 kcal Electronic energy + Delta-G solvation = -20043.748280 eV Core-core repulsion = 17447.409280 eV Total energy + Delta-G solvation = -2596.338999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.36132 -36.37367 -33.03118 -32.31137 -31.25302 -29.91907 -26.44955 -25.69415 -24.93144 -24.68071 -21.41628 -20.45559 -18.59732 -18.20163 -16.67166 -15.91687 -14.81262 -14.33463 -14.21964 -13.99970 -13.47012 -13.15406 -13.10165 -12.90835 -12.51562 -12.10555 -11.77075 -11.69582 -11.46788 -11.08131 -10.88709 -10.75470 -10.66156 -10.39404 -10.09536 -9.85036 -9.67803 -9.56038 -9.33440 -9.17685 -8.66388 -8.51516 -7.99065 -7.01991 -6.69900 -6.32027 -3.92965 3.35536 3.59131 3.83617 4.54642 4.86932 5.04707 5.51095 5.59512 5.85660 5.95202 6.04792 6.11270 6.13870 6.23818 6.36057 6.41851 6.44550 6.50136 6.52123 6.57598 6.61835 6.68047 6.83425 6.92955 6.94298 7.00164 7.04449 7.17026 7.18531 7.31376 7.45629 7.49707 7.61142 7.77742 7.92448 8.10326 8.20429 8.38950 8.55421 8.74751 8.91585 9.46351 10.65577 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.011698 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.814530 B = 2393.030702 C = 2755.917111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 C -0.172 4.172 4 N -0.542 5.542 5 C 0.014 3.986 6 C -0.105 4.105 7 C -0.097 4.097 8 C 0.054 3.946 9 C -0.560 4.560 10 H 0.072 0.928 11 C 0.107 3.893 12 N -0.835 5.835 13 Si 0.728 3.272 14 H -0.303 1.303 15 H -0.314 1.314 16 H -0.107 1.107 17 C 0.062 3.938 18 N -0.819 5.819 19 C -0.089 4.089 20 C 0.072 3.928 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.161 0.839 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.042 0.958 36 H 0.015 0.985 37 H 0.310 0.690 38 H 0.334 0.666 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.027 0.973 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -4.987 -1.993 5.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.230 4.230 4 N -0.266 5.266 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.135 4.135 8 C 0.053 3.947 9 C -0.595 4.595 10 H 0.090 0.910 11 C -0.100 4.100 12 N -0.466 5.466 13 Si 0.561 3.439 14 H -0.232 1.232 15 H -0.244 1.244 16 H -0.032 1.032 17 C -0.068 4.068 18 N -0.358 5.358 19 C -0.128 4.128 20 C -0.057 4.057 21 H 0.064 0.936 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.178 0.822 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.988 -5.409 -1.804 6.437 hybrid contribution 1.596 1.360 0.447 2.145 sum -1.391 -4.049 -1.357 4.491 Atomic orbital electron populations 1.21821 0.95927 1.01435 1.00366 1.21510 0.94545 0.93073 0.93375 1.22354 1.02058 0.97461 1.01166 1.59180 1.19977 1.45249 1.02152 1.22854 1.03965 0.96822 0.87399 1.21279 0.96584 0.99486 0.96943 1.22205 0.94388 0.99555 0.97310 1.18182 0.90547 0.95034 0.90937 1.20567 1.39392 0.88693 1.10839 0.91037 1.24889 0.91691 0.95001 0.98459 1.70338 1.31074 1.07405 1.37805 0.90304 0.76559 0.85871 0.91202 1.23243 1.24364 1.03203 1.22243 0.99175 0.95164 0.90251 1.60961 1.46622 1.06522 1.21730 1.21328 0.98152 0.97030 0.96308 1.21000 0.89899 0.99532 0.95239 0.93631 0.92697 0.92893 0.92101 0.92331 0.94608 0.91225 0.94761 0.82204 0.93162 0.94825 0.95085 0.92173 0.92532 0.93985 0.96706 0.87767 0.84460 0.94008 0.93505 0.95467 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.11 37.16 0.34 -1.88 16 2 C 0.08 1.53 2.84 -67.71 -0.19 1.34 16 3 C -0.17 -3.32 8.66 37.16 0.32 -3.00 16 4 N -0.54 -11.07 3.84 -231.98 -0.89 -11.96 16 5 C 0.01 0.32 3.72 -4.51 -0.02 0.30 16 6 C -0.10 -2.24 5.41 -27.40 -0.15 -2.39 16 7 C -0.10 -2.13 3.84 -25.70 -0.10 -2.23 16 8 C 0.05 1.18 0.49 -156.17 -0.08 1.11 16 9 C -0.56 -13.81 4.85 -34.44 -0.17 -13.98 16 10 H 0.07 1.95 6.47 -52.49 -0.34 1.61 16 11 C 0.11 2.74 3.62 -17.82 -0.06 2.68 16 12 N -0.83 -22.20 12.52 55.43 0.69 -21.50 16 13 Si 0.73 17.40 21.64 -169.99 -3.68 13.72 16 14 H -0.30 -7.46 7.10 56.52 0.40 -7.06 16 15 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 16 H -0.11 -2.37 3.73 49.51 0.18 -2.18 16 17 C 0.06 1.24 5.32 -3.82 -0.02 1.22 16 18 N -0.82 -16.17 5.78 -10.37 -0.06 -16.23 16 19 C -0.09 -1.83 5.03 -27.11 -0.14 -1.96 16 20 C 0.07 1.51 4.65 -6.75 -0.03 1.48 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 23 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 24 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 25 H 0.06 1.25 7.11 -51.92 -0.37 0.88 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.50 6.66 -51.93 -0.35 1.15 16 28 H 0.03 0.75 5.58 -51.93 -0.29 0.46 16 29 H 0.16 3.87 1.87 -51.93 -0.10 3.78 16 30 H 0.05 1.04 7.26 -51.93 -0.38 0.66 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 33 H 0.06 1.40 2.33 -51.93 -0.12 1.28 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.01 0.29 8.13 -51.93 -0.42 -0.13 16 37 H 0.31 5.16 9.08 -39.29 -0.36 4.81 16 38 H 0.33 7.23 3.36 -39.29 -0.13 7.09 16 39 H 0.04 0.80 7.72 -51.93 -0.40 0.39 16 40 H 0.05 0.94 7.11 -51.93 -0.37 0.57 16 41 H 0.03 0.53 7.72 -51.92 -0.40 0.13 16 42 H 0.07 1.56 3.89 -51.93 -0.20 1.36 16 LS Contribution 274.79 15.07 4.14 4.14 Total: -1.00 -25.65 274.79 -6.93 -32.58 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -6.84 Total: 16.57 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -0.29 Total: -17.32 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.26 Total: -49.70 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -3.68 Total: 13.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -25.65 -6.93 -32.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.894 kcal (2) G-P(sol) polarization free energy of solvation -25.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds