Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47527 * 2 1 4 4 N 1.46904 * 109.46956 * 120.00162 * 2 1 3 5 5 C 1.46844 * 111.00328 * 50.78732 * 4 2 1 6 6 C 1.53032 * 109.52527 * 185.83771 * 5 4 2 7 7 C 1.53114 * 109.28141 * 300.82107 * 6 5 4 8 8 C 1.53123 * 109.16198 * 57.65126 * 7 6 5 9 9 H 1.09011 * 109.49940 * 62.28508 * 8 7 6 10 10 N 1.46900 * 109.50895 * 182.40522 * 8 7 6 11 11 C 1.46899 * 110.99544 * 58.75806 * 10 8 7 12 12 C 1.46899 * 110.99816 * 294.80841 * 10 8 7 13 13 C 1.50696 * 109.47103 * 189.99911 * 12 10 8 14 14 H 1.08007 * 119.99837 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00391 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00533 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99868 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47078 * 90.00137 * 17 15 13 19 19 H 1.48498 * 109.47604 * 209.99916 * 17 15 13 20 20 H 1.48501 * 109.47120 * 330.00365 * 17 15 13 21 21 C 1.46846 * 110.99942 * 174.99886 * 4 2 1 22 22 H 1.09000 * 109.46851 * 300.00175 * 1 2 3 23 23 H 1.09000 * 109.46967 * 59.99836 * 1 2 3 24 24 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46851 * 239.99825 * 2 1 3 26 26 H 1.09000 * 109.47573 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47131 * 300.00064 * 3 2 1 28 28 H 1.09000 * 109.47198 * 60.00037 * 3 2 1 29 29 H 1.09000 * 109.46271 * 305.85568 * 5 4 2 30 30 H 1.08998 * 109.46026 * 65.82128 * 5 4 2 31 31 H 1.09000 * 109.50025 * 60.76400 * 6 5 4 32 32 H 1.09000 * 109.50523 * 180.83925 * 6 5 4 33 33 H 1.09000 * 109.52528 * 177.55766 * 7 6 5 34 34 H 1.08998 * 109.52620 * 297.74970 * 7 6 5 35 35 H 1.09000 * 109.47468 * 60.00219 * 11 10 8 36 36 H 1.09001 * 109.46724 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47283 * 299.99925 * 11 10 8 38 38 H 1.09001 * 109.47030 * 309.99234 * 12 10 8 39 39 H 1.08999 * 109.47467 * 69.99365 * 12 10 8 40 40 H 0.96995 * 120.00009 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.46456 * 294.17536 * 21 4 2 42 42 H 1.09003 * 109.46474 * 54.14041 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.3779 -2.0050 1.3483 6 6 1.8003 -2.6329 2.6783 7 6 3.3238 -2.7830 2.7055 8 6 3.9679 -1.4090 2.5001 9 1 3.6847 -0.7483 3.3196 10 7 5.4295 -1.5524 2.4673 11 6 5.8453 -2.4598 1.3894 12 6 5.9431 -2.0076 3.7661 13 6 7.4468 -1.9085 3.7743 14 1 7.9687 -1.5443 2.9017 15 6 8.1562 -2.2829 4.8957 16 7 9.4686 -2.1970 4.9027 17 14 7.2535 -2.9122 6.4051 18 1 7.1025 -4.3867 6.3127 19 1 8.0287 -2.5696 7.6244 20 1 5.9113 -2.2809 6.4782 21 6 3.4826 -0.8165 1.1752 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.2948 -1.8836 1.3316 30 1 1.6832 -2.6536 0.5272 31 1 1.4830 -1.9915 3.5005 32 1 1.3356 -3.6135 2.7817 33 1 3.6327 -3.1898 3.6684 34 1 3.6379 -3.4554 1.9072 35 1 5.5115 -2.0624 0.4309 36 1 6.9317 -2.5483 1.3879 37 1 5.4013 -3.4422 1.5500 38 1 5.5334 -1.3812 4.5585 39 1 5.6462 -3.0432 3.9315 40 1 9.9676 -2.4600 5.6918 41 1 3.7782 -1.4708 0.3549 42 1 3.9283 0.1680 1.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = 6.939008 kcal Electronic energy + Delta-G solvation = -18416.988543 eV Core-core repulsion = 15817.901277 eV Total energy + Delta-G solvation = -2599.087266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60776 -36.86945 -34.00269 -32.39544 -30.68836 -29.63591 -27.76685 -27.02358 -24.95915 -24.15643 -21.96065 -20.95295 -19.83930 -18.83062 -16.92836 -16.35292 -15.24249 -14.89441 -14.49785 -14.30991 -14.08899 -13.68483 -13.37124 -13.17105 -13.15577 -12.54607 -12.32478 -12.27886 -11.96939 -11.68486 -11.51275 -11.28825 -11.16791 -11.00042 -10.87132 -10.75807 -10.42552 -10.25822 -10.14828 -9.93093 -9.74073 -9.24717 -8.54943 -8.19882 -7.27919 -6.02876 -3.99662 3.29619 3.37478 3.40226 3.83950 4.44267 4.73013 4.87997 4.97592 5.05041 5.13611 5.21234 5.27244 5.30553 5.45760 5.52987 5.58843 5.64556 5.69984 5.75480 5.80061 5.84957 5.95462 5.95577 6.12277 6.15619 6.18856 6.21174 6.25131 6.28515 6.48910 6.63973 6.73448 6.91998 7.03926 7.21045 7.23410 7.64309 7.95115 8.10772 8.69425 9.05853 9.59270 11.10374 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.005714 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.310711 B = 4898.679817 C = 5228.186526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.145 4.145 4 N -0.534 5.534 5 C 0.053 3.947 6 C -0.111 4.111 7 C -0.157 4.157 8 C 0.088 3.912 9 H 0.083 0.917 10 N -0.524 5.524 11 C 0.030 3.970 12 C 0.164 3.836 13 C -0.508 4.508 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.064 3.936 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.027 0.973 39 H -0.015 1.015 40 H 0.263 0.737 41 H 0.032 0.968 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 1.606 -8.720 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 C -0.203 4.203 4 N -0.260 5.260 5 C -0.075 4.075 6 C -0.150 4.150 7 C -0.197 4.197 8 C -0.022 4.022 9 H 0.101 0.899 10 N -0.247 5.247 11 C -0.118 4.118 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.063 4.063 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.003 0.997 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.740 2.336 -8.296 19.723 hybrid contribution -0.424 -1.766 0.372 1.854 sum -18.164 0.570 -7.924 19.825 Atomic orbital electron populations 1.21959 0.94721 1.01805 1.02111 1.21559 0.95171 0.95338 0.90979 1.21863 1.01589 0.95029 1.01790 1.61905 1.06283 1.19552 1.38242 1.22161 0.99076 0.89227 0.97015 1.21519 0.96179 0.99839 0.97453 1.22319 0.95265 0.99842 1.02246 1.21698 0.88526 0.94741 0.97232 0.89911 1.62118 1.06835 1.49280 1.06421 1.22329 1.02429 0.93433 0.93614 1.20164 0.96754 0.92951 0.86391 1.21061 0.88943 1.42898 1.01726 0.90170 1.24888 0.94703 0.95426 0.98295 1.69893 1.05720 1.48810 1.29657 0.86879 0.80378 0.79437 0.83179 1.20416 1.21158 1.19118 1.22164 0.86054 1.01273 0.96847 0.91726 0.92432 0.92561 0.94621 0.92166 0.92624 0.91756 0.90566 0.95469 0.91246 0.92100 0.91615 0.92082 0.93447 0.90293 0.96690 0.95460 0.99693 0.92710 0.95001 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.65 37.16 0.32 -1.02 16 2 C 0.08 0.86 2.69 -67.71 -0.18 0.68 16 3 C -0.15 -1.52 9.10 37.15 0.34 -1.18 16 4 N -0.53 -7.00 4.52 -226.70 -1.03 -8.02 16 5 C 0.05 0.64 5.00 -3.84 -0.02 0.62 16 6 C -0.11 -1.45 6.09 -26.66 -0.16 -1.61 16 7 C -0.16 -2.52 4.59 -26.61 -0.12 -2.64 16 8 C 0.09 1.54 2.39 -67.63 -0.16 1.38 16 9 H 0.08 1.55 8.03 -51.92 -0.42 1.13 16 10 N -0.52 -11.09 4.74 -236.23 -1.12 -12.21 16 11 C 0.03 0.59 8.63 60.06 0.52 1.11 16 12 C 0.16 4.02 3.24 -4.98 -0.02 4.00 16 13 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 14 H 0.08 2.50 7.37 -52.48 -0.39 2.11 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 17 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 C 0.06 0.97 4.39 -3.84 -0.02 0.96 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.49 6.19 -51.93 -0.32 0.17 16 25 H 0.04 0.41 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 0.69 6.41 -51.93 -0.33 0.35 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.80 5.83 -51.93 -0.30 0.50 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.15 6.89 -51.93 -0.36 0.79 16 34 H 0.06 0.98 6.27 -51.93 -0.33 0.66 16 35 H 0.05 0.80 6.31 -51.93 -0.33 0.48 16 36 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 37 H 0.01 0.28 6.23 -51.93 -0.32 -0.05 16 38 H 0.03 0.69 7.06 -51.93 -0.37 0.32 16 39 H -0.01 -0.36 6.43 -51.93 -0.33 -0.69 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.03 0.49 6.38 -51.92 -0.33 0.16 16 42 H 0.08 1.31 6.18 -51.93 -0.32 0.99 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -29.93 306.47 -8.68 -38.61 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.35 Total: -2.32 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -1.37 Total: -47.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.93 -8.68 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.553 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds