Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47527 * 2 1 4 4 N 1.46904 * 109.46956 * 120.00162 * 2 1 3 5 5 C 1.46844 * 111.00328 * 50.78732 * 4 2 1 6 6 C 1.53032 * 109.52527 * 185.83771 * 5 4 2 7 7 C 1.53114 * 109.28141 * 300.82107 * 6 5 4 8 8 C 1.53123 * 109.16198 * 57.65126 * 7 6 5 9 9 H 1.09011 * 109.49940 * 62.28508 * 8 7 6 10 10 N 1.46900 * 109.50895 * 182.40522 * 8 7 6 11 11 C 1.46899 * 110.99544 * 58.75806 * 10 8 7 12 12 C 1.46899 * 110.99816 * 294.80841 * 10 8 7 13 13 C 1.50696 * 109.47103 * 189.99911 * 12 10 8 14 14 H 1.08007 * 119.99837 * 359.97438 * 13 12 10 15 15 C 1.37874 * 120.00391 * 179.97438 * 13 12 10 16 16 N 1.31517 * 120.00533 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99868 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47078 * 90.00137 * 17 15 13 19 19 H 1.48498 * 109.47604 * 209.99916 * 17 15 13 20 20 H 1.48501 * 109.47120 * 330.00365 * 17 15 13 21 21 C 1.46846 * 110.99942 * 174.99886 * 4 2 1 22 22 H 1.09000 * 109.46851 * 300.00175 * 1 2 3 23 23 H 1.09000 * 109.46967 * 59.99836 * 1 2 3 24 24 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46851 * 239.99825 * 2 1 3 26 26 H 1.09000 * 109.47573 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47131 * 300.00064 * 3 2 1 28 28 H 1.09000 * 109.47198 * 60.00037 * 3 2 1 29 29 H 1.09000 * 109.46271 * 305.85568 * 5 4 2 30 30 H 1.08998 * 109.46026 * 65.82128 * 5 4 2 31 31 H 1.09000 * 109.50025 * 60.76400 * 6 5 4 32 32 H 1.09000 * 109.50523 * 180.83925 * 6 5 4 33 33 H 1.09000 * 109.52528 * 177.55766 * 7 6 5 34 34 H 1.08998 * 109.52620 * 297.74970 * 7 6 5 35 35 H 1.09000 * 109.47468 * 60.00219 * 11 10 8 36 36 H 1.09001 * 109.46724 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.47283 * 299.99925 * 11 10 8 38 38 H 1.09001 * 109.47030 * 309.99234 * 12 10 8 39 39 H 1.08999 * 109.47467 * 69.99365 * 12 10 8 40 40 H 0.96995 * 120.00009 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.46456 * 294.17536 * 21 4 2 42 42 H 1.09003 * 109.46474 * 54.14041 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.3779 -2.0050 1.3483 6 6 1.8003 -2.6329 2.6783 7 6 3.3238 -2.7830 2.7055 8 6 3.9679 -1.4090 2.5001 9 1 3.6847 -0.7483 3.3196 10 7 5.4295 -1.5524 2.4673 11 6 5.8453 -2.4598 1.3894 12 6 5.9431 -2.0076 3.7661 13 6 7.4468 -1.9085 3.7743 14 1 7.9687 -1.5443 2.9017 15 6 8.1562 -2.2829 4.8957 16 7 9.4686 -2.1970 4.9027 17 14 7.2535 -2.9122 6.4051 18 1 7.1025 -4.3867 6.3127 19 1 8.0287 -2.5696 7.6244 20 1 5.9113 -2.2809 6.4782 21 6 3.4826 -0.8165 1.1752 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.2948 -1.8836 1.3316 30 1 1.6832 -2.6536 0.5272 31 1 1.4830 -1.9915 3.5005 32 1 1.3356 -3.6135 2.7817 33 1 3.6327 -3.1898 3.6684 34 1 3.6379 -3.4554 1.9072 35 1 5.5115 -2.0624 0.4309 36 1 6.9317 -2.5483 1.3879 37 1 5.4013 -3.4422 1.5500 38 1 5.5334 -1.3812 4.5585 39 1 5.6462 -3.0432 3.9315 40 1 9.9676 -2.4600 5.6918 41 1 3.7782 -1.4708 0.3549 42 1 3.9283 0.1680 1.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = -14.006286 kcal Electronic energy + Delta-G solvation = -18417.896799 eV Core-core repulsion = 15817.901277 eV Total energy + Delta-G solvation = -2599.995522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81341 -38.22956 -35.33675 -34.38855 -31.80417 -31.00673 -29.47324 -28.03130 -26.60860 -25.32471 -23.43131 -22.36669 -20.86707 -20.22416 -19.02348 -17.47235 -16.78085 -16.21079 -15.90047 -15.77803 -15.50605 -14.92592 -14.80965 -14.49714 -14.34518 -14.28205 -13.71663 -13.32001 -13.09764 -12.94614 -12.78903 -12.62557 -12.57233 -12.28809 -12.22436 -12.08819 -11.82563 -11.80123 -11.57360 -11.42286 -11.25663 -11.16232 -10.78486 -9.23192 -8.93868 -8.28963 -6.31943 1.32539 1.34976 1.45933 2.33513 2.76773 3.04295 3.40371 3.84888 3.87870 3.99386 4.08150 4.14967 4.32179 4.40133 4.45577 4.48501 4.52895 4.57970 4.68812 4.75208 4.82711 4.86796 4.90578 4.93963 5.00030 5.01871 5.03757 5.06375 5.12841 5.18636 5.30275 5.37044 5.37284 5.46532 5.54476 5.98299 6.15314 6.25954 6.38976 6.66731 6.74292 7.31669 8.87745 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.005714 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.310711 B = 4898.679817 C = 5228.186526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.143 4.143 4 N -0.541 5.541 5 C 0.054 3.946 6 C -0.106 4.106 7 C -0.153 4.153 8 C 0.088 3.912 9 H 0.069 0.931 10 N -0.542 5.542 11 C 0.038 3.962 12 C 0.178 3.822 13 C -0.517 4.517 14 H 0.038 0.962 15 C 0.010 3.990 16 N -0.948 5.948 17 Si 0.945 3.055 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.252 1.252 21 C 0.076 3.924 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.023 0.977 39 H -0.011 1.011 40 H 0.267 0.733 41 H 0.031 0.969 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 1.096 -8.833 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.201 4.201 4 N -0.267 5.267 5 C -0.074 4.074 6 C -0.144 4.144 7 C -0.193 4.193 8 C -0.021 4.021 9 H 0.088 0.912 10 N -0.265 5.265 11 C -0.110 4.110 12 C 0.050 3.950 13 C -0.555 4.555 14 H 0.056 0.944 15 C -0.188 4.188 16 N -0.588 5.588 17 Si 0.768 3.232 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.175 1.175 21 C -0.052 4.052 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.006 0.994 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.845 1.833 -8.433 22.560 hybrid contribution 0.566 -1.544 0.305 1.673 sum -20.279 0.289 -8.128 21.849 Atomic orbital electron populations 1.21920 0.92801 1.02485 1.02810 1.21679 0.96647 0.95062 0.89939 1.21853 1.00614 0.95121 1.02493 1.61913 1.04722 1.20430 1.39631 1.22224 1.00266 0.88541 0.96342 1.21500 0.93675 1.01159 0.98053 1.22246 0.97578 0.98260 1.01168 1.21712 0.86213 0.95838 0.98336 0.91246 1.61989 1.09624 1.49698 1.05170 1.22234 1.00453 0.93932 0.94345 1.19860 0.93931 0.92962 0.88210 1.21290 0.91283 1.42448 1.00490 0.94351 1.25810 0.95464 0.95607 1.01881 1.70045 1.07625 1.50221 1.30952 0.85752 0.79535 0.79290 0.78616 1.19189 1.20508 1.17533 1.21929 0.87778 1.00425 0.95062 0.91994 0.90813 0.91856 0.94682 0.93669 0.90697 0.92284 0.88274 0.95301 0.91476 0.89986 0.93338 0.92146 0.90822 0.93440 0.95789 0.95888 0.99372 0.92410 0.95100 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.65 71.98 0.62 -1.48 16 2 C 0.07 1.46 2.69 44.91 0.12 1.58 16 3 C -0.14 -2.75 9.10 71.98 0.66 -2.10 16 4 N -0.54 -12.98 4.52 -871.13 -3.94 -16.92 16 5 C 0.05 1.12 5.00 86.32 0.43 1.56 16 6 C -0.11 -2.45 6.09 30.64 0.19 -2.26 16 7 C -0.15 -4.66 4.59 30.67 0.14 -4.52 16 8 C 0.09 3.03 2.39 44.97 0.11 3.14 16 9 H 0.07 2.57 8.03 -2.38 -0.02 2.55 16 10 N -0.54 -23.12 4.74 -901.29 -4.27 -27.39 16 11 C 0.04 1.51 8.63 127.69 1.10 2.61 16 12 C 0.18 8.77 3.24 85.56 0.28 9.05 16 13 C -0.52 -30.60 9.01 25.60 0.23 -30.37 16 14 H 0.04 2.53 7.37 -2.91 -0.02 2.50 16 15 C 0.01 0.57 5.47 84.65 0.46 1.04 16 16 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 17 Si 0.94 44.89 27.47 68.60 1.88 46.77 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 21 C 0.08 2.22 4.39 86.33 0.38 2.59 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.85 6.19 -2.39 -0.01 0.83 16 25 H 0.04 0.71 8.13 -2.39 -0.02 0.69 16 26 H 0.04 0.99 6.41 -2.39 -0.02 0.98 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.67 5.83 -2.39 -0.01 1.66 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.63 6.89 -2.39 -0.02 1.61 16 34 H 0.06 1.83 6.27 -2.39 -0.01 1.82 16 35 H 0.07 2.46 6.31 -2.39 -0.02 2.44 16 36 H 0.05 2.14 6.76 -2.39 -0.02 2.12 16 37 H 0.02 0.88 6.23 -2.39 -0.01 0.87 16 38 H 0.02 1.15 7.06 -2.39 -0.02 1.14 16 39 H -0.01 -0.55 6.43 -2.39 -0.02 -0.57 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.03 0.90 6.38 -2.38 -0.02 0.88 16 42 H 0.07 2.31 6.18 -2.39 -0.01 2.29 16 Total: -1.00 -65.74 306.47 -0.40 -66.14 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.91 Total: 10.33 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.72 Total: -19.16 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -7.92 Total: -104.09 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -65.74 -0.40 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.133 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds