Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 N 1.46900 * 109.47143 * 120.00103 * 2 1 3 5 5 C 1.46929 * 110.98461 * 304.22915 * 4 2 1 6 6 C 1.53037 * 109.47910 * 174.18240 * 5 4 2 7 7 C 1.53114 * 109.31211 * 59.15772 * 6 5 4 8 8 C 1.53126 * 109.16239 * 302.32855 * 7 6 5 9 9 H 1.09006 * 109.49902 * 297.71480 * 8 7 6 10 10 N 1.46895 * 109.50595 * 177.63330 * 8 7 6 11 11 C 1.46902 * 111.00155 * 183.94924 * 10 8 7 12 12 C 1.46906 * 110.99928 * 60.00099 * 10 8 7 13 13 C 1.50696 * 109.47059 * 190.00165 * 12 10 8 14 14 H 1.07998 * 120.00166 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99979 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47501 * 59.99638 * 17 15 13 19 19 H 1.48500 * 109.47411 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47256 * 299.99615 * 17 15 13 21 21 C 1.46850 * 110.99740 * 180.02562 * 4 2 1 22 22 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47341 * 300.00322 * 1 2 3 24 24 H 1.09010 * 109.47189 * 60.00118 * 1 2 3 25 25 H 1.09001 * 109.46911 * 239.99998 * 2 1 3 26 26 H 1.09000 * 109.46731 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46473 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47267 * 59.99633 * 3 2 1 29 29 H 1.08994 * 109.51866 * 54.15475 * 5 4 2 30 30 H 1.09007 * 109.45009 * 294.16157 * 5 4 2 31 31 H 1.09002 * 109.50283 * 299.19589 * 6 5 4 32 32 H 1.09003 * 109.50113 * 179.11776 * 6 5 4 33 33 H 1.09006 * 109.52545 * 62.23190 * 7 6 5 34 34 H 1.08997 * 109.52864 * 182.35913 * 7 6 5 35 35 H 1.09003 * 109.46841 * 60.00079 * 11 10 8 36 36 H 1.08995 * 109.47365 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47108 * 300.00494 * 11 10 8 38 38 H 1.09007 * 109.47009 * 309.99598 * 12 10 8 39 39 H 1.08995 * 109.47241 * 69.99364 * 12 10 8 40 40 H 0.96999 * 120.00102 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46198 * 65.82029 * 21 4 2 42 42 H 1.08999 * 109.45191 * 305.84745 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4675 -0.0869 2.4189 6 6 1.8811 -0.9196 3.6345 7 6 3.4091 -0.9736 3.7152 8 6 3.9606 -1.5631 2.4140 9 1 3.5982 -2.5842 2.2948 10 7 5.4288 -1.5661 2.4604 11 6 5.9947 -2.0387 1.1898 12 6 5.9183 -2.3721 3.5868 13 6 7.4005 -2.1562 3.7522 14 1 7.9264 -1.4875 3.0869 15 6 8.0855 -2.8132 4.7523 16 7 7.4452 -3.6278 5.5622 17 14 9.9229 -2.5461 4.9569 18 1 10.1877 -1.1097 5.2247 19 1 10.4178 -3.3608 6.0957 20 1 10.6241 -2.9553 3.7135 21 6 3.4876 -0.7115 1.2336 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.3800 -0.0584 2.3512 30 1 1.8513 0.9277 2.5262 31 1 1.4859 -1.9306 3.5346 32 1 1.4847 -0.4619 4.5410 33 1 3.8024 0.0335 3.8542 34 1 3.7077 -1.6004 4.5554 35 1 5.6719 -1.3822 0.3817 36 1 7.0829 -2.0313 1.2516 37 1 5.6492 -3.0536 0.9934 38 1 5.4034 -2.0716 4.4994 39 1 5.7243 -3.4265 3.3905 40 1 7.9270 -4.0898 6.2661 41 1 3.8615 0.3061 1.3466 42 1 3.8669 -1.1367 0.3044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = 2.379759 kcal Electronic energy + Delta-G solvation = -18369.144785 eV Core-core repulsion = 15769.859816 eV Total energy + Delta-G solvation = -2599.284970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51711 -36.67150 -33.93453 -32.43706 -30.57769 -29.19115 -27.34627 -27.12184 -24.87574 -23.98815 -22.07829 -21.18869 -19.43088 -18.90481 -16.54688 -16.01822 -15.03112 -14.77748 -14.56950 -14.21580 -13.97048 -13.86165 -13.51601 -12.99920 -12.91617 -12.39578 -12.15135 -12.01362 -11.89035 -11.80503 -11.28671 -11.27284 -11.04611 -10.81672 -10.67665 -10.60918 -10.55876 -10.34957 -10.06406 -9.97198 -9.43255 -9.13062 -8.37922 -8.09553 -7.16254 -5.98854 -3.99623 3.35494 3.39366 3.42352 3.96312 4.46229 4.79713 4.95918 5.01962 5.19366 5.26782 5.28377 5.36169 5.39809 5.50610 5.57152 5.62442 5.71762 5.75731 5.81879 5.95027 6.01539 6.07102 6.09741 6.14663 6.22966 6.27301 6.31234 6.37929 6.47742 6.70707 6.80310 6.86179 7.20812 7.28793 7.41683 7.44311 7.85057 8.16339 8.27105 8.62063 9.07749 9.63965 11.12023 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044346 B = 0.005247 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.251656 B = 5335.061311 C = 5659.332432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 C -0.188 4.188 4 N -0.533 5.533 5 C 0.051 3.949 6 C -0.115 4.115 7 C -0.114 4.114 8 C 0.090 3.910 9 H 0.036 0.964 10 N -0.538 5.538 11 C 0.036 3.964 12 C 0.191 3.809 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.063 3.937 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.036 0.964 39 H -0.011 1.011 40 H 0.261 0.739 41 H 0.043 0.957 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 7.250 -8.998 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.247 4.247 4 N -0.258 5.258 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.019 4.019 9 H 0.054 0.946 10 N -0.263 5.263 11 C -0.113 4.113 12 C 0.066 3.934 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.065 4.065 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.054 0.946 39 H 0.007 0.993 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.753 7.116 -8.783 17.042 hybrid contribution 1.094 0.055 0.106 1.100 sum -11.659 7.171 -8.678 16.207 Atomic orbital electron populations 1.21908 0.94658 1.02316 1.01453 1.21666 0.95378 0.92348 0.93800 1.22492 1.02011 0.98205 1.01947 1.62170 1.08690 1.53250 1.01653 1.22185 0.99325 0.96077 0.90057 1.21591 0.96759 1.00565 0.96460 1.21659 0.93593 1.01877 0.98020 1.21475 0.89540 0.97045 0.93835 0.94641 1.62142 1.03860 1.55827 1.04498 1.22237 1.01369 0.96251 0.91415 1.19780 0.95618 0.89961 0.88034 1.21142 0.92910 1.25686 1.14765 0.92018 1.24978 0.98504 0.95274 0.95847 1.69950 1.36066 1.29094 1.18788 0.86577 0.85248 0.78163 0.77500 1.20222 1.21385 1.20327 1.22164 0.85954 0.99340 0.99009 0.91897 0.92479 0.92540 0.90231 0.92117 0.92447 0.92493 0.90880 0.94867 0.91512 0.91790 0.91785 0.90891 0.93642 0.90824 0.97120 0.94571 0.99343 0.92931 0.93919 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.84 37.16 0.33 -1.05 16 2 C 0.08 0.87 3.03 -67.71 -0.20 0.66 16 3 C -0.19 -1.99 8.50 37.16 0.32 -1.68 16 4 N -0.53 -7.34 4.68 -226.62 -1.06 -8.40 16 5 C 0.05 0.66 4.68 -3.79 -0.02 0.64 16 6 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 7 C -0.11 -2.02 5.00 -26.61 -0.13 -2.15 16 8 C 0.09 1.70 2.10 -67.63 -0.14 1.56 16 9 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 10 N -0.54 -11.90 4.62 -236.22 -1.09 -12.99 16 11 C 0.04 0.72 8.93 60.07 0.54 1.26 16 12 C 0.19 5.06 4.54 -4.97 -0.02 5.03 16 13 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 14 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.06 1.00 3.79 -3.83 -0.01 0.98 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.52 6.22 -51.93 -0.32 0.20 16 24 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.71 6.54 -51.93 -0.34 0.37 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 29 H 0.07 0.82 5.91 -51.93 -0.31 0.52 16 30 H 0.03 0.44 6.71 -51.92 -0.35 0.09 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.45 6.34 -51.93 -0.33 1.12 16 35 H 0.04 0.78 6.26 -51.93 -0.33 0.45 16 36 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.04 1.01 5.88 -51.92 -0.31 0.70 16 39 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.04 0.70 6.63 -51.93 -0.34 0.36 16 42 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -29.53 309.95 -9.06 -38.59 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.38 Total: -2.71 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.42 Total: -47.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.53 -9.06 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds