Wall clock time and date at job start Mon Mar 30 2020 03:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47138 * 2 1 4 4 N 1.46900 * 109.47143 * 120.00103 * 2 1 3 5 5 C 1.46929 * 110.98461 * 304.22915 * 4 2 1 6 6 C 1.53037 * 109.47910 * 174.18240 * 5 4 2 7 7 C 1.53114 * 109.31211 * 59.15772 * 6 5 4 8 8 C 1.53126 * 109.16239 * 302.32855 * 7 6 5 9 9 H 1.09006 * 109.49902 * 297.71480 * 8 7 6 10 10 N 1.46895 * 109.50595 * 177.63330 * 8 7 6 11 11 C 1.46902 * 111.00155 * 183.94924 * 10 8 7 12 12 C 1.46906 * 110.99928 * 60.00099 * 10 8 7 13 13 C 1.50696 * 109.47059 * 190.00165 * 12 10 8 14 14 H 1.07998 * 120.00166 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99979 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00090 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47501 * 59.99638 * 17 15 13 19 19 H 1.48500 * 109.47411 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47256 * 299.99615 * 17 15 13 21 21 C 1.46850 * 110.99740 * 180.02562 * 4 2 1 22 22 H 1.09004 * 109.47318 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47341 * 300.00322 * 1 2 3 24 24 H 1.09010 * 109.47189 * 60.00118 * 1 2 3 25 25 H 1.09001 * 109.46911 * 239.99998 * 2 1 3 26 26 H 1.09000 * 109.46731 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46473 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47267 * 59.99633 * 3 2 1 29 29 H 1.08994 * 109.51866 * 54.15475 * 5 4 2 30 30 H 1.09007 * 109.45009 * 294.16157 * 5 4 2 31 31 H 1.09002 * 109.50283 * 299.19589 * 6 5 4 32 32 H 1.09003 * 109.50113 * 179.11776 * 6 5 4 33 33 H 1.09006 * 109.52545 * 62.23190 * 7 6 5 34 34 H 1.08997 * 109.52864 * 182.35913 * 7 6 5 35 35 H 1.09003 * 109.46841 * 60.00079 * 11 10 8 36 36 H 1.08995 * 109.47365 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.47108 * 300.00494 * 11 10 8 38 38 H 1.09007 * 109.47009 * 309.99598 * 12 10 8 39 39 H 1.08995 * 109.47241 * 69.99364 * 12 10 8 40 40 H 0.96999 * 120.00102 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.46198 * 65.82029 * 21 4 2 42 42 H 1.08999 * 109.45191 * 305.84745 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.4675 -0.0869 2.4189 6 6 1.8811 -0.9196 3.6345 7 6 3.4091 -0.9736 3.7152 8 6 3.9606 -1.5631 2.4140 9 1 3.5982 -2.5842 2.2948 10 7 5.4288 -1.5661 2.4604 11 6 5.9947 -2.0387 1.1898 12 6 5.9183 -2.3721 3.5868 13 6 7.4005 -2.1562 3.7522 14 1 7.9264 -1.4875 3.0869 15 6 8.0855 -2.8132 4.7523 16 7 7.4452 -3.6278 5.5622 17 14 9.9229 -2.5461 4.9569 18 1 10.1877 -1.1097 5.2247 19 1 10.4178 -3.3608 6.0957 20 1 10.6241 -2.9553 3.7135 21 6 3.4876 -0.7115 1.2336 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.3800 -0.0584 2.3512 30 1 1.8513 0.9277 2.5262 31 1 1.4859 -1.9306 3.5346 32 1 1.4847 -0.4619 4.5410 33 1 3.8024 0.0335 3.8542 34 1 3.7077 -1.6004 4.5554 35 1 5.6719 -1.3822 0.3817 36 1 7.0829 -2.0313 1.2516 37 1 5.6492 -3.0536 0.9934 38 1 5.4034 -2.0716 4.4994 39 1 5.7243 -3.4265 3.3905 40 1 7.9270 -4.0898 6.2661 41 1 3.8615 0.3061 1.3466 42 1 3.8669 -1.1367 0.3044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:09 Heat of formation + Delta-G solvation = -17.613946 kcal Electronic energy + Delta-G solvation = -18370.011777 eV Core-core repulsion = 15769.859816 eV Total energy + Delta-G solvation = -2600.151962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75814 -38.18432 -35.35769 -34.43481 -31.78228 -30.58662 -29.13828 -28.07322 -26.65582 -25.24877 -23.71076 -22.63588 -20.83216 -20.13258 -18.57670 -17.33027 -16.74275 -16.13134 -15.93353 -15.55106 -15.53080 -15.13774 -14.87858 -14.56303 -14.11347 -13.87408 -13.61162 -13.46627 -13.18650 -12.87519 -12.78311 -12.72259 -12.47502 -12.36042 -12.21672 -12.07938 -12.04065 -11.67712 -11.64518 -11.33346 -11.16649 -10.97844 -10.57244 -9.17925 -9.02640 -8.19821 -6.29926 1.40559 1.44083 1.51961 2.39972 2.83626 3.12392 3.44217 3.78815 3.94754 4.02777 4.10647 4.23058 4.36087 4.41955 4.43212 4.50316 4.59533 4.65859 4.72116 4.77357 4.79086 4.82403 4.92205 5.01811 5.06794 5.07669 5.09534 5.13474 5.18639 5.29124 5.31911 5.35474 5.40886 5.46683 5.65883 6.04602 6.15162 6.26618 6.35962 6.66789 6.86065 7.39379 8.91276 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044346 B = 0.005247 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.251656 B = 5335.061311 C = 5659.332432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.183 4.183 4 N -0.542 5.542 5 C 0.055 3.945 6 C -0.109 4.109 7 C -0.110 4.110 8 C 0.089 3.911 9 H 0.016 0.984 10 N -0.544 5.544 11 C 0.039 3.961 12 C 0.208 3.792 13 C -0.525 4.525 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.079 3.921 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.006 0.994 38 H 0.015 0.985 39 H -0.047 1.047 40 H 0.264 0.736 41 H 0.040 0.960 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 8.754 -10.253 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.242 4.242 4 N -0.267 5.267 5 C -0.073 4.073 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.020 4.020 9 H 0.034 0.966 10 N -0.269 5.269 11 C -0.109 4.109 12 C 0.081 3.919 13 C -0.563 4.563 14 H 0.081 0.919 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.050 4.050 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.024 0.976 38 H 0.033 0.967 39 H -0.029 1.029 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.373 8.634 -10.064 18.833 hybrid contribution 1.215 -0.425 0.474 1.372 sum -12.158 8.209 -9.589 17.526 Atomic orbital electron populations 1.21874 0.92885 1.02408 1.02635 1.21786 0.96726 0.92473 0.92421 1.22439 1.01042 0.97813 1.02869 1.62160 1.07009 1.54470 1.03089 1.22205 1.00696 0.95541 0.88839 1.21562 0.93620 1.01023 0.98484 1.21602 0.96506 1.00447 0.96282 1.21570 0.87438 0.96860 0.96111 0.96605 1.62096 1.06121 1.54515 1.04130 1.22244 1.00381 0.96891 0.91400 1.19417 0.95102 0.88344 0.88997 1.21455 0.93893 1.25902 1.15082 0.91914 1.25923 1.03733 0.94705 0.95285 1.70089 1.38183 1.29930 1.19353 0.85428 0.78877 0.78422 0.77834 1.19303 1.20795 1.19213 1.21906 0.87734 0.98154 0.97172 0.92340 0.92017 0.90666 0.90203 0.93533 0.90576 0.92526 0.88392 0.94619 0.91981 0.89775 0.92418 0.94113 0.90119 0.92320 0.97558 0.96720 1.02934 0.92703 0.94215 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.84 71.98 0.64 -1.55 16 2 C 0.07 1.47 3.03 44.91 0.14 1.60 16 3 C -0.18 -3.38 8.50 71.98 0.61 -2.77 16 4 N -0.54 -13.96 4.68 -870.88 -4.08 -18.04 16 5 C 0.05 1.29 4.68 86.31 0.40 1.69 16 6 C -0.11 -3.00 6.09 30.64 0.19 -2.81 16 7 C -0.11 -4.04 5.00 30.67 0.15 -3.89 16 8 C 0.09 3.44 2.10 44.97 0.09 3.53 16 9 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 10 N -0.54 -24.72 4.62 -901.27 -4.17 -28.88 16 11 C 0.04 1.58 8.93 127.69 1.14 2.72 16 12 C 0.21 11.54 4.54 85.55 0.39 11.92 16 13 C -0.53 -30.60 8.46 25.60 0.22 -30.38 16 14 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 15 C 0.00 0.08 5.46 84.65 0.46 0.55 16 16 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.08 2.41 3.79 86.33 0.33 2.74 16 22 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.06 0.91 6.22 -2.39 -0.01 0.89 16 24 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 0.99 6.54 -2.39 -0.02 0.98 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.06 1.05 6.63 -2.39 -0.02 1.04 16 29 H 0.10 1.88 5.91 -2.39 -0.01 1.87 16 30 H 0.04 0.85 6.71 -2.38 -0.02 0.83 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.04 1.72 6.34 -2.39 -0.02 1.71 16 35 H 0.08 2.67 6.26 -2.39 -0.01 2.65 16 36 H 0.06 2.52 6.76 -2.39 -0.02 2.51 16 37 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.01 0.88 5.88 -2.38 -0.01 0.86 16 39 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.04 1.25 6.63 -2.39 -0.02 1.24 16 42 H 0.07 2.18 6.38 -2.39 -0.02 2.17 16 Total: -1.00 -64.96 309.95 -0.21 -65.17 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.97 Total: 8.60 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.76 Total: -16.65 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.96 Total: -104.16 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.96 -0.21 -65.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.554 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds