Wall clock time and date at job start Mon Mar 30 2020 03:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46901 * 109.47132 * 240.00282 * 2 1 3 5 5 C 1.44262 * 111.00090 * 66.88408 * 4 2 1 6 6 C 1.54075 * 111.98334 * 219.30914 * 5 4 2 7 7 C 1.54287 * 112.28623 * 318.91545 * 6 5 4 8 8 C 1.50458 * 113.03409 * 318.29929 * 7 6 5 9 9 H 1.09002 * 109.57924 * 332.34196 * 8 7 6 10 10 N 1.46505 * 109.57321 * 211.96752 * 8 7 6 11 11 C 1.46496 * 119.99798 * 300.62878 * 10 8 7 12 12 C 1.36933 * 120.00074 * 120.63437 * 10 8 7 13 13 H 1.08005 * 120.00060 * 23.93568 * 12 10 8 14 14 C 1.38808 * 120.00264 * 203.93980 * 12 10 8 15 15 N 1.31627 * 120.00024 * 14.87221 * 14 12 10 16 16 Si 1.86801 * 120.00283 * 194.87101 * 14 12 10 17 17 H 1.48499 * 109.47095 * 60.00088 * 16 14 12 18 18 H 1.48512 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47097 * 299.99634 * 16 14 12 20 20 C 1.54504 * 108.85396 * 92.15887 * 8 7 6 21 21 C 1.45870 * 111.58704 * 282.80625 * 20 8 7 22 22 H 1.09000 * 109.46926 * 175.93384 * 1 2 3 23 23 H 1.09001 * 109.47222 * 295.92844 * 1 2 3 24 24 H 1.08999 * 109.47210 * 55.93434 * 1 2 3 25 25 H 1.08999 * 109.47574 * 120.00540 * 2 1 3 26 26 H 1.08999 * 109.47657 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47011 * 300.00259 * 3 2 1 28 28 H 1.09008 * 109.46550 * 60.00149 * 3 2 1 29 29 H 1.09002 * 108.98214 * 339.95219 * 5 4 2 30 30 H 1.09003 * 108.98209 * 98.66788 * 5 4 2 31 31 H 1.09001 * 108.91629 * 198.19201 * 6 5 4 32 32 H 1.08999 * 108.91304 * 79.63743 * 6 5 4 33 33 H 1.09003 * 108.76983 * 197.38711 * 7 6 5 34 34 H 1.08994 * 108.68146 * 79.15386 * 7 6 5 35 35 H 1.09002 * 109.47021 * 93.14218 * 11 10 8 36 36 H 1.09003 * 109.47559 * 213.13330 * 11 10 8 37 37 H 1.08993 * 109.47600 * 333.13900 * 11 10 8 38 38 H 0.97002 * 120.00279 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.06145 * 162.26283 * 20 8 7 40 40 H 1.08999 * 109.05544 * 43.34632 * 20 8 7 41 41 H 1.08989 * 108.79230 * 300.43652 * 21 20 8 42 42 H 1.09003 * 108.78786 * 182.21084 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6934 0.0485 -2.3935 6 6 1.2689 -0.8779 -3.5492 7 6 2.1435 -2.1460 -3.6341 8 6 3.6061 -1.8680 -3.4166 9 1 3.8331 -0.8465 -3.7216 10 7 4.4069 -2.8077 -4.2053 11 6 4.2738 -4.2496 -3.9832 12 6 5.2799 -2.3382 -5.1501 13 1 5.6740 -1.3358 -5.0705 14 6 5.6582 -3.1505 -6.2102 15 7 4.9750 -4.2431 -6.4785 16 14 7.1367 -2.6930 -7.2562 17 1 8.3488 -2.6325 -6.4003 18 1 7.3296 -3.7163 -8.3151 19 1 6.9075 -1.3672 -7.8843 20 6 3.9301 -2.0444 -1.9162 21 6 3.4816 -0.8991 -1.1321 22 1 -0.3633 -1.0251 -0.0729 23 1 -0.3634 0.4493 0.9242 24 1 -0.3633 0.5756 -0.8513 25 1 1.8933 -0.5139 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 0.8771 0.7361 -2.1723 30 1 2.5658 0.6242 -2.7030 31 1 1.3481 -0.3303 -4.4883 32 1 0.2304 -1.1740 -3.4013 33 1 2.0147 -2.5957 -4.6186 34 1 1.8051 -2.8548 -2.8784 35 1 3.5362 -4.6571 -4.6745 36 1 5.2359 -4.7336 -4.1516 37 1 3.9504 -4.4310 -2.9583 38 1 5.2396 -4.8110 -7.2191 39 1 5.0074 -2.1582 -1.7957 40 1 3.4352 -2.9432 -1.5485 41 1 3.9803 -0.0033 -1.5020 42 1 3.7669 -1.0527 -0.0913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:59 Heat of formation + Delta-G solvation = 23.534480 kcal Electronic energy + Delta-G solvation = -18719.872948 eV Core-core repulsion = 16121.505316 eV Total energy + Delta-G solvation = -2598.367632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.48773 -36.39241 -33.69099 -32.02684 -31.24973 -29.24229 -27.21418 -25.84379 -25.57720 -24.42594 -21.77753 -21.29098 -19.17553 -18.28149 -16.70071 -16.22898 -15.22991 -14.74517 -14.34376 -14.15001 -13.86202 -13.68502 -13.07187 -12.83340 -12.53798 -12.35087 -12.16424 -11.85554 -11.59725 -11.42954 -11.06526 -11.04188 -10.86222 -10.75946 -10.60467 -10.34033 -10.29193 -10.15158 -9.97837 -9.68142 -9.66572 -9.35347 -8.42657 -8.02734 -6.59171 -5.62003 -3.06678 3.44053 3.49414 3.50495 4.08110 4.57989 4.84455 5.04336 5.16420 5.29501 5.34611 5.50744 5.53808 5.59891 5.66306 5.68281 5.73119 5.77521 5.80207 5.87614 5.99519 6.13736 6.19222 6.23434 6.28352 6.31640 6.47733 6.55755 6.69188 6.91638 6.94536 6.96005 7.22255 7.30314 7.43573 7.46413 7.50258 7.85317 7.89734 8.53388 9.35874 10.01429 10.52115 11.42966 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041812 B = 0.005853 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.509269 B = 4782.941864 C = 4888.974443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 C -0.186 4.186 4 N -0.521 5.521 5 C 0.054 3.946 6 C -0.104 4.104 7 C -0.119 4.119 8 C 0.186 3.814 9 H 0.054 0.946 10 N -0.597 5.597 11 C 0.164 3.836 12 C -0.251 4.251 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.907 5.907 16 Si 0.900 3.100 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.284 1.284 20 C -0.132 4.132 21 C 0.068 3.932 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.036 0.964 37 H 0.000 1.000 38 H 0.251 0.749 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 8.327 12.108 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.245 4.245 4 N -0.245 5.245 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.159 4.159 8 C 0.078 3.922 9 H 0.073 0.927 10 N -0.319 5.319 11 C 0.020 3.980 12 C -0.381 4.381 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.552 5.552 16 Si 0.731 3.269 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.211 1.211 20 C -0.172 4.172 21 C -0.060 4.060 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.577 7.704 11.935 16.100 hybrid contribution 1.193 0.956 -0.638 1.657 sum -6.384 8.660 11.297 15.601 Atomic orbital electron populations 1.21849 0.94601 1.02507 1.01059 1.21783 0.95597 0.92211 0.93717 1.22544 1.01529 0.98376 1.02053 1.61838 1.13830 1.47482 1.01301 1.21967 0.99688 0.95062 0.90737 1.21889 0.99057 0.97122 0.96241 1.21820 0.96284 0.96308 1.01478 1.20009 0.89594 0.93692 0.88888 0.92729 1.43984 1.45478 1.01208 1.41221 1.20672 0.99877 0.83939 0.93546 1.19148 1.17932 0.99715 1.01277 0.91853 1.24985 0.99443 0.98339 0.96942 1.70071 1.38942 1.15826 1.30336 0.86401 0.83267 0.77387 0.79881 1.21235 1.21725 1.21076 1.21122 1.00412 0.97643 0.98049 1.20970 0.86716 0.98719 0.99582 0.91754 0.92722 0.92705 0.90351 0.92621 0.92332 0.92550 0.92220 0.94358 0.92724 0.93055 0.92031 0.93049 0.95652 0.94485 0.98190 0.93878 0.91759 0.92244 0.94978 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.11 37.15 0.34 -1.10 16 2 C 0.08 0.85 2.85 -67.72 -0.19 0.66 16 3 C -0.19 -1.90 8.63 37.16 0.32 -1.58 16 4 N -0.52 -7.26 4.19 -231.55 -0.97 -8.23 16 5 C 0.05 0.77 3.72 -4.67 -0.02 0.75 16 6 C -0.10 -1.67 6.15 -25.50 -0.16 -1.83 16 7 C -0.12 -2.34 4.59 -27.33 -0.13 -2.46 16 8 C 0.19 3.93 2.27 -68.41 -0.16 3.78 16 9 H 0.05 1.20 6.90 -51.93 -0.36 0.84 16 10 N -0.60 -15.34 2.70 -174.04 -0.47 -15.81 16 11 C 0.16 4.19 8.32 59.84 0.50 4.68 16 12 C -0.25 -7.06 9.56 -15.06 -0.14 -7.21 16 13 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 14 C 0.00 0.03 5.04 -17.43 -0.09 -0.06 16 15 N -0.91 -27.09 10.89 55.49 0.60 -26.48 16 16 Si 0.90 22.29 29.58 -169.99 -5.03 17.26 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 20 C -0.13 -2.39 4.45 -29.32 -0.13 -2.53 16 21 C 0.07 1.01 4.13 -6.70 -0.03 0.98 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.55 6.52 -51.93 -0.34 0.22 16 25 H 0.08 0.86 7.81 -51.93 -0.41 0.46 16 26 H 0.05 0.60 7.27 -51.93 -0.38 0.22 16 27 H 0.06 0.61 6.50 -51.93 -0.34 0.27 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.74 4.92 -51.93 -0.26 0.49 16 30 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.40 7.95 -51.93 -0.41 0.99 16 34 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 35 H 0.03 0.70 7.43 -51.93 -0.39 0.31 16 36 H 0.04 1.01 7.32 -51.93 -0.38 0.62 16 37 H 0.00 -0.01 6.82 -51.93 -0.35 -0.36 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.10 6.85 -51.93 -0.36 0.75 16 41 H 0.03 0.49 6.93 -51.93 -0.36 0.13 16 42 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -29.48 307.21 -8.63 -38.11 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -7.52 Total: -3.57 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 0.12 Total: -5.91 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.84 Total: -50.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.48 -8.63 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.647 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds