Wall clock time and date at job start Mon Mar 30 2020 03:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46901 * 109.47132 * 240.00282 * 2 1 3 5 5 C 1.44262 * 111.00090 * 66.88408 * 4 2 1 6 6 C 1.54075 * 111.98334 * 219.30914 * 5 4 2 7 7 C 1.54287 * 112.28623 * 318.91545 * 6 5 4 8 8 C 1.50458 * 113.03409 * 318.29929 * 7 6 5 9 9 H 1.09002 * 109.57924 * 332.34196 * 8 7 6 10 10 N 1.46505 * 109.57321 * 211.96752 * 8 7 6 11 11 C 1.46496 * 119.99798 * 300.62878 * 10 8 7 12 12 C 1.36933 * 120.00074 * 120.63437 * 10 8 7 13 13 H 1.08005 * 120.00060 * 23.93568 * 12 10 8 14 14 C 1.38808 * 120.00264 * 203.93980 * 12 10 8 15 15 N 1.31627 * 120.00024 * 14.87221 * 14 12 10 16 16 Si 1.86801 * 120.00283 * 194.87101 * 14 12 10 17 17 H 1.48499 * 109.47095 * 60.00088 * 16 14 12 18 18 H 1.48512 * 109.46891 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47097 * 299.99634 * 16 14 12 20 20 C 1.54504 * 108.85396 * 92.15887 * 8 7 6 21 21 C 1.45870 * 111.58704 * 282.80625 * 20 8 7 22 22 H 1.09000 * 109.46926 * 175.93384 * 1 2 3 23 23 H 1.09001 * 109.47222 * 295.92844 * 1 2 3 24 24 H 1.08999 * 109.47210 * 55.93434 * 1 2 3 25 25 H 1.08999 * 109.47574 * 120.00540 * 2 1 3 26 26 H 1.08999 * 109.47657 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47011 * 300.00259 * 3 2 1 28 28 H 1.09008 * 109.46550 * 60.00149 * 3 2 1 29 29 H 1.09002 * 108.98214 * 339.95219 * 5 4 2 30 30 H 1.09003 * 108.98209 * 98.66788 * 5 4 2 31 31 H 1.09001 * 108.91629 * 198.19201 * 6 5 4 32 32 H 1.08999 * 108.91304 * 79.63743 * 6 5 4 33 33 H 1.09003 * 108.76983 * 197.38711 * 7 6 5 34 34 H 1.08994 * 108.68146 * 79.15386 * 7 6 5 35 35 H 1.09002 * 109.47021 * 93.14218 * 11 10 8 36 36 H 1.09003 * 109.47559 * 213.13330 * 11 10 8 37 37 H 1.08993 * 109.47600 * 333.13900 * 11 10 8 38 38 H 0.97002 * 120.00279 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.06145 * 162.26283 * 20 8 7 40 40 H 1.08999 * 109.05544 * 43.34632 * 20 8 7 41 41 H 1.08989 * 108.79230 * 300.43652 * 21 20 8 42 42 H 1.09003 * 108.78786 * 182.21084 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.6934 0.0485 -2.3935 6 6 1.2689 -0.8779 -3.5492 7 6 2.1435 -2.1460 -3.6341 8 6 3.6061 -1.8680 -3.4166 9 1 3.8331 -0.8465 -3.7216 10 7 4.4069 -2.8077 -4.2053 11 6 4.2738 -4.2496 -3.9832 12 6 5.2799 -2.3382 -5.1501 13 1 5.6740 -1.3358 -5.0705 14 6 5.6582 -3.1505 -6.2102 15 7 4.9750 -4.2431 -6.4785 16 14 7.1367 -2.6930 -7.2562 17 1 8.3488 -2.6325 -6.4003 18 1 7.3296 -3.7163 -8.3151 19 1 6.9075 -1.3672 -7.8843 20 6 3.9301 -2.0444 -1.9162 21 6 3.4816 -0.8991 -1.1321 22 1 -0.3633 -1.0251 -0.0729 23 1 -0.3634 0.4493 0.9242 24 1 -0.3633 0.5756 -0.8513 25 1 1.8933 -0.5139 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 0.8771 0.7361 -2.1723 30 1 2.5658 0.6242 -2.7030 31 1 1.3481 -0.3303 -4.4883 32 1 0.2304 -1.1740 -3.4013 33 1 2.0147 -2.5957 -4.6186 34 1 1.8051 -2.8548 -2.8784 35 1 3.5362 -4.6571 -4.6745 36 1 5.2359 -4.7336 -4.1516 37 1 3.9504 -4.4310 -2.9583 38 1 5.2396 -4.8110 -7.2191 39 1 5.0074 -2.1582 -1.7957 40 1 3.4352 -2.9432 -1.5485 41 1 3.9803 -0.0033 -1.5020 42 1 3.7669 -1.0527 -0.0913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:59 Heat of formation + Delta-G solvation = 6.012515 kcal Electronic energy + Delta-G solvation = -18720.632758 eV Core-core repulsion = 16121.505316 eV Total energy + Delta-G solvation = -2599.127441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71672 -38.00792 -35.33705 -33.38235 -32.93866 -30.82349 -27.99878 -27.96970 -26.93432 -26.00753 -23.59584 -22.41228 -20.58180 -19.63611 -18.76948 -17.45334 -16.86067 -16.31861 -15.62144 -15.52357 -15.28461 -15.13671 -14.75903 -14.20299 -13.98355 -13.64723 -13.34401 -13.14440 -13.00551 -12.78485 -12.69025 -12.57944 -12.41935 -12.19834 -12.11447 -12.01557 -11.87149 -11.66660 -11.61495 -11.37114 -11.16902 -10.98576 -10.57120 -9.12327 -8.70425 -7.79628 -5.27264 1.45623 1.48493 1.55091 2.52637 3.00642 3.32588 3.70301 3.89388 3.98713 4.14978 4.21946 4.33230 4.41683 4.44802 4.47582 4.68425 4.73060 4.74173 4.79240 4.82852 4.85856 4.99819 5.01742 5.06462 5.10951 5.14406 5.27108 5.29745 5.37509 5.39139 5.43675 5.47345 5.56313 5.64552 5.68109 5.78543 6.27546 6.38524 6.42335 7.19071 7.94042 8.39226 9.23600 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041812 B = 0.005853 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.509269 B = 4782.941864 C = 4888.974443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 C -0.181 4.181 4 N -0.531 5.531 5 C 0.061 3.939 6 C -0.100 4.100 7 C -0.107 4.107 8 C 0.182 3.818 9 H 0.045 0.955 10 N -0.613 5.613 11 C 0.183 3.817 12 C -0.262 4.262 13 H 0.065 0.935 14 C -0.053 4.053 15 N -0.939 5.939 16 Si 0.967 3.033 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.276 1.276 20 C -0.116 4.116 21 C 0.072 3.928 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.051 0.949 35 H -0.003 1.003 36 H 0.011 0.989 37 H 0.028 0.972 38 H 0.247 0.753 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 10.056 13.777 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.240 4.240 4 N -0.255 5.255 5 C -0.068 4.068 6 C -0.139 4.139 7 C -0.146 4.146 8 C 0.076 3.924 9 H 0.063 0.937 10 N -0.335 5.335 11 C 0.038 3.962 12 C -0.393 4.393 13 H 0.083 0.917 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.795 3.205 17 H -0.205 1.205 18 H -0.220 1.220 19 H -0.201 1.201 20 C -0.156 4.156 21 C -0.056 4.056 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.015 0.985 36 H 0.030 0.970 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.025 9.467 13.640 18.441 hybrid contribution 1.274 0.428 -1.106 1.740 sum -6.751 9.895 12.534 17.338 Atomic orbital electron populations 1.21826 0.93531 1.02120 1.02165 1.21892 0.96374 0.92689 0.92446 1.22486 1.01071 0.97620 1.02834 1.61756 1.12960 1.48463 1.02305 1.21870 1.00171 0.94595 0.90131 1.21852 0.99025 0.95662 0.97336 1.21617 0.95998 0.98067 0.98932 1.20205 0.89846 0.92086 0.90265 0.93703 1.44241 1.46077 1.01788 1.41406 1.20364 0.97595 0.83948 0.94280 1.19490 1.18313 0.99827 1.01651 0.91684 1.25772 1.02128 0.98515 0.98426 1.70243 1.40449 1.16939 1.30932 0.85350 0.79931 0.77156 0.78072 1.20508 1.22036 1.20137 1.20926 0.99757 0.99090 0.95821 1.20830 0.87626 0.97073 1.00043 0.92716 0.90688 0.92714 0.89732 0.93284 0.92593 0.90739 0.89855 0.95227 0.93115 0.91565 0.96085 0.93046 0.98475 0.97028 0.95385 0.94396 0.92930 0.92616 0.95051 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.11 71.98 0.66 -1.67 16 2 C 0.07 1.42 2.85 44.91 0.13 1.54 16 3 C -0.18 -3.08 8.63 71.98 0.62 -2.46 16 4 N -0.53 -13.48 4.19 -886.48 -3.72 -17.20 16 5 C 0.06 1.59 3.72 87.16 0.32 1.92 16 6 C -0.10 -3.10 6.15 31.39 0.19 -2.91 16 7 C -0.11 -4.21 4.59 30.21 0.14 -4.07 16 8 C 0.18 7.74 2.27 44.68 0.10 7.84 16 9 H 0.04 1.97 6.90 -2.39 -0.02 1.96 16 10 N -0.61 -32.13 2.70 -704.53 -1.90 -34.03 16 11 C 0.18 9.60 8.32 127.77 1.06 10.66 16 12 C -0.26 -15.01 9.56 84.03 0.80 -14.21 16 13 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 14 C -0.05 -3.10 5.04 84.86 0.43 -2.67 16 15 N -0.94 -57.71 10.89 21.65 0.24 -57.48 16 16 Si 0.97 46.37 29.58 68.60 2.03 48.40 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 C -0.12 -4.09 4.45 28.92 0.13 -3.97 16 21 C 0.07 1.99 4.13 83.94 0.35 2.34 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.91 6.52 -2.39 -0.02 0.90 16 25 H 0.08 1.55 7.81 -2.39 -0.02 1.53 16 26 H 0.05 0.90 7.27 -2.39 -0.02 0.89 16 27 H 0.06 0.98 6.50 -2.39 -0.02 0.97 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 1.81 4.92 -2.39 -0.01 1.80 16 30 H 0.03 0.83 6.51 -2.39 -0.02 0.82 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.02 0.97 7.95 -2.39 -0.02 0.95 16 34 H 0.05 2.00 7.38 -2.39 -0.02 1.98 16 35 H 0.00 -0.17 7.43 -2.39 -0.02 -0.19 16 36 H 0.01 0.62 7.32 -2.39 -0.02 0.61 16 37 H 0.03 1.27 6.82 -2.39 -0.02 1.25 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.99 6.85 -2.39 -0.02 1.98 16 41 H 0.03 0.89 6.93 -2.39 -0.02 0.87 16 42 H 0.08 1.85 7.60 -2.39 -0.02 1.84 16 Total: -1.00 -64.19 307.21 2.54 -61.65 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.96 Total: 6.31 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 4.93 Total: -7.65 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -5.38 Total: -108.71 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -64.19 2.54 -61.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.667 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds