Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 N 1.46909 * 109.46871 * 120.00019 * 2 1 3 5 5 C 1.47995 * 110.99498 * 190.49390 * 4 2 1 6 6 C 1.50452 * 112.82145 * 191.33956 * 5 4 2 7 7 C 1.54316 * 108.49287 * 93.72970 * 6 5 4 8 8 C 1.45873 * 112.18872 * 281.46325 * 7 6 5 9 9 H 1.08998 * 108.93921 * 300.42266 * 8 7 6 10 10 C 1.53004 * 108.94085 * 181.72989 * 8 7 6 11 11 N 1.46500 * 109.47034 * 63.70497 * 10 8 7 12 12 C 1.36942 * 120.00070 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00077 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99770 * 180.02562 * 12 11 10 15 15 N 1.31609 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99605 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47470 * 89.99951 * 16 14 12 18 18 H 1.48500 * 109.47122 * 209.99989 * 16 14 12 19 19 H 1.48497 * 109.47241 * 329.99910 * 16 14 12 20 20 C 1.54312 * 112.18683 * 61.12481 * 8 7 6 21 21 C 1.48004 * 110.99773 * 61.77423 * 4 2 1 22 22 H 1.08997 * 109.46746 * 293.73492 * 1 2 3 23 23 H 1.08998 * 109.46901 * 53.73124 * 1 2 3 24 24 H 1.09000 * 109.47208 * 173.72995 * 1 2 3 25 25 H 1.09003 * 109.47200 * 239.99591 * 2 1 3 26 26 H 1.08996 * 109.47115 * 66.25029 * 3 2 1 27 27 H 1.09005 * 109.47164 * 186.24646 * 3 2 1 28 28 H 1.08995 * 109.47356 * 306.24667 * 3 2 1 29 29 H 1.09004 * 108.81539 * 70.48592 * 5 4 2 30 30 H 1.08999 * 108.82079 * 312.20381 * 5 4 2 31 31 H 1.08993 * 109.63475 * 334.03285 * 6 5 4 32 32 H 1.08994 * 109.63361 * 213.42892 * 6 5 4 33 33 H 1.09006 * 108.93560 * 160.76773 * 7 6 5 34 34 H 1.09003 * 108.93705 * 42.16605 * 7 6 5 35 35 H 1.08997 * 109.47527 * 183.70680 * 10 8 7 36 36 H 1.09002 * 109.47041 * 303.71386 * 10 8 7 37 37 H 0.97001 * 120.00179 * 0.02562 * 11 10 8 38 38 H 0.97000 * 119.99932 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.63292 * 41.16222 * 20 8 7 40 40 H 1.08996 * 109.63608 * 161.76208 * 20 8 7 41 41 H 1.09000 * 108.80659 * 205.70083 * 21 4 2 42 42 H 1.08997 * 108.81085 * 323.97069 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4773 -0.4982 1.3662 6 6 4.0703 -1.4005 2.4138 7 6 4.6011 -2.6729 1.7205 8 6 3.5323 -3.6129 1.4012 9 1 3.0279 -3.9016 2.3233 10 6 4.1432 -4.8599 0.7586 11 7 5.0167 -5.5293 1.7256 12 6 5.6768 -6.6761 1.3727 13 1 5.5538 -7.0868 0.3815 14 6 6.5041 -7.3107 2.2891 15 7 6.6536 -6.8106 3.4973 16 14 7.4050 -8.8746 1.8075 17 1 8.7278 -8.5260 1.2298 18 1 7.5985 -9.7246 3.0097 19 1 6.6050 -9.6165 0.8002 20 6 2.4955 -3.0087 0.4310 21 6 1.5803 -2.1058 1.2124 22 1 -0.3633 0.4136 0.9407 23 1 -0.3633 0.6079 -0.8286 24 1 -0.3633 -1.0215 -0.1122 25 1 1.8934 -0.5139 -0.8900 26 1 1.7710 1.9230 0.9406 27 1 3.1243 1.4445 -0.1118 28 1 1.5883 1.9876 -0.8287 29 1 3.6638 0.5380 1.6485 30 1 3.9694 -0.6947 0.4136 31 1 3.3041 -1.6718 3.1399 32 1 4.8905 -0.8883 2.9167 33 1 5.3175 -3.1625 2.3802 34 1 5.1088 -2.3879 0.7989 35 1 3.3470 -5.5401 0.4565 36 1 4.7249 -4.5698 -0.1164 37 1 5.1270 -5.1608 2.6160 38 1 7.2314 -7.2542 4.1378 39 1 3.0073 -2.4329 -0.3400 40 1 1.9153 -3.8084 -0.0295 41 1 1.5421 -2.4525 2.2451 42 1 0.5789 -2.1664 0.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 1.044543 kcal Electronic energy + Delta-G solvation = -18131.517440 eV Core-core repulsion = 15532.174571 eV Total energy + Delta-G solvation = -2599.342869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.65945 -36.54759 -34.02246 -32.29233 -31.66177 -30.07160 -27.71676 -26.45253 -25.02028 -23.69587 -21.84463 -21.19191 -19.74190 -18.95600 -17.12256 -16.46139 -15.48178 -15.00996 -14.64247 -14.28012 -13.96472 -13.62348 -13.18671 -13.02879 -12.68624 -12.45977 -12.39956 -12.14457 -12.00630 -11.73087 -11.72280 -11.29170 -11.05397 -10.91672 -10.80041 -10.66073 -10.47795 -10.15137 -10.13598 -10.02373 -9.77777 -9.47898 -8.83548 -8.08755 -6.87035 -5.73169 -3.01092 3.45431 3.50373 3.52231 3.84672 4.61912 4.78743 4.88410 4.92375 5.07587 5.22343 5.25145 5.32188 5.45836 5.53382 5.54357 5.60763 5.61695 5.69597 5.73353 5.79231 5.85640 5.95753 6.01981 6.08592 6.14115 6.16832 6.21927 6.27503 6.37864 6.45645 6.52567 6.60238 6.81596 6.97390 7.01277 7.21955 7.27307 7.73163 8.46314 9.57136 10.16479 10.51232 11.49935 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054378 B = 0.004532 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.790304 B = 6176.847523 C = 6408.531766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 C -0.147 4.147 4 N -0.545 5.545 5 C 0.066 3.934 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.089 4.089 9 H 0.068 0.932 10 C 0.156 3.844 11 N -0.732 5.732 12 C -0.238 4.238 13 H 0.069 0.931 14 C -0.015 4.015 15 N -0.934 5.934 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.139 4.139 21 C 0.056 3.944 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 15.439 -5.873 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.205 4.205 4 N -0.271 5.271 5 C -0.061 4.061 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.108 4.108 9 H 0.087 0.913 10 C 0.028 3.972 11 N -0.377 5.377 12 C -0.370 4.370 13 H 0.087 0.913 14 C -0.210 4.210 15 N -0.583 5.583 16 Si 0.738 3.262 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.179 4.179 21 C -0.071 4.071 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.218 0.782 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.938 15.497 -5.579 19.771 hybrid contribution 1.037 -1.230 -0.679 1.746 sum -9.901 14.266 -6.259 18.459 Atomic orbital electron populations 1.21903 0.94638 1.01678 1.02009 1.21544 0.95416 0.94621 0.91493 1.21916 1.00924 0.95572 1.02067 1.62020 1.13752 1.13260 1.38082 1.21788 0.86545 0.99565 0.98192 1.21453 1.00247 0.96257 0.98017 1.20609 0.98514 0.95152 1.00730 1.20297 0.95961 0.95971 0.98590 0.91344 1.20777 0.92642 0.91161 0.92630 1.42427 1.53375 1.28665 1.13210 1.19248 1.19723 1.00482 0.97505 0.91323 1.24723 1.00815 0.99467 0.96043 1.69655 1.42488 1.41275 1.04904 0.86195 0.79807 0.83158 0.77089 1.21776 1.21770 1.20811 1.21891 0.98075 0.99284 0.98613 1.21959 0.97925 0.86178 1.01059 0.91807 0.92578 0.92576 0.94479 0.91814 0.92704 0.92542 0.91525 0.95008 0.90931 0.91447 0.90618 0.92840 0.96584 0.96738 0.78209 0.93560 0.92279 0.91437 0.90753 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.93 37.16 0.33 -0.97 16 2 C 0.08 0.81 2.63 -67.71 -0.18 0.63 16 3 C -0.15 -1.33 8.38 37.16 0.31 -1.02 16 4 N -0.55 -6.50 4.58 -227.90 -1.04 -7.55 16 5 C 0.07 0.81 3.91 -4.49 -0.02 0.79 16 6 C -0.12 -1.66 5.63 -27.31 -0.15 -1.81 16 7 C -0.11 -1.84 4.44 -29.42 -0.13 -1.97 16 8 C -0.09 -1.50 1.80 -93.30 -0.17 -1.67 16 9 H 0.07 1.21 7.52 -51.93 -0.39 0.82 16 10 C 0.16 3.26 5.55 -4.04 -0.02 3.24 16 11 N -0.73 -19.08 5.25 -59.91 -0.31 -19.39 16 12 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 13 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 14 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 15 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 16 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.14 -1.92 4.94 -27.32 -0.13 -2.06 16 21 C 0.06 0.69 5.00 -4.49 -0.02 0.67 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 25 H 0.04 0.42 7.71 -51.93 -0.40 0.02 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.50 6.94 -51.93 -0.36 0.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 30 H 0.03 0.41 6.48 -51.93 -0.34 0.08 16 31 H 0.07 1.02 7.08 -51.93 -0.37 0.65 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.46 6.77 -51.93 -0.35 1.11 16 34 H 0.05 0.89 7.52 -51.93 -0.39 0.49 16 35 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.38 10.42 6.64 -40.82 -0.27 10.15 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 0.83 6.61 -51.93 -0.34 0.49 16 40 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 41 H 0.07 0.98 6.59 -51.93 -0.34 0.64 16 42 H 0.07 0.77 5.65 -51.93 -0.29 0.47 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -30.17 310.16 -8.86 -39.03 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.45 Total: 5.15 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.43 Total: -11.72 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.63 Total: -54.93 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.17 -8.86 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.078 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds