Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 N 1.46909 * 109.46871 * 120.00019 * 2 1 3 5 5 C 1.47995 * 110.99498 * 190.49390 * 4 2 1 6 6 C 1.50452 * 112.82145 * 191.33956 * 5 4 2 7 7 C 1.54316 * 108.49287 * 93.72970 * 6 5 4 8 8 C 1.45873 * 112.18872 * 281.46325 * 7 6 5 9 9 H 1.08998 * 108.93921 * 300.42266 * 8 7 6 10 10 C 1.53004 * 108.94085 * 181.72989 * 8 7 6 11 11 N 1.46500 * 109.47034 * 63.70497 * 10 8 7 12 12 C 1.36942 * 120.00070 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00077 * 0.02562 * 12 11 10 14 14 C 1.38815 * 119.99770 * 180.02562 * 12 11 10 15 15 N 1.31609 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99605 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47470 * 89.99951 * 16 14 12 18 18 H 1.48500 * 109.47122 * 209.99989 * 16 14 12 19 19 H 1.48497 * 109.47241 * 329.99910 * 16 14 12 20 20 C 1.54312 * 112.18683 * 61.12481 * 8 7 6 21 21 C 1.48004 * 110.99773 * 61.77423 * 4 2 1 22 22 H 1.08997 * 109.46746 * 293.73492 * 1 2 3 23 23 H 1.08998 * 109.46901 * 53.73124 * 1 2 3 24 24 H 1.09000 * 109.47208 * 173.72995 * 1 2 3 25 25 H 1.09003 * 109.47200 * 239.99591 * 2 1 3 26 26 H 1.08996 * 109.47115 * 66.25029 * 3 2 1 27 27 H 1.09005 * 109.47164 * 186.24646 * 3 2 1 28 28 H 1.08995 * 109.47356 * 306.24667 * 3 2 1 29 29 H 1.09004 * 108.81539 * 70.48592 * 5 4 2 30 30 H 1.08999 * 108.82079 * 312.20381 * 5 4 2 31 31 H 1.08993 * 109.63475 * 334.03285 * 6 5 4 32 32 H 1.08994 * 109.63361 * 213.42892 * 6 5 4 33 33 H 1.09006 * 108.93560 * 160.76773 * 7 6 5 34 34 H 1.09003 * 108.93705 * 42.16605 * 7 6 5 35 35 H 1.08997 * 109.47527 * 183.70680 * 10 8 7 36 36 H 1.09002 * 109.47041 * 303.71386 * 10 8 7 37 37 H 0.97001 * 120.00179 * 0.02562 * 11 10 8 38 38 H 0.97000 * 119.99932 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.63292 * 41.16222 * 20 8 7 40 40 H 1.08996 * 109.63608 * 161.76208 * 20 8 7 41 41 H 1.09000 * 108.80659 * 205.70083 * 21 4 2 42 42 H 1.08997 * 108.81085 * 323.97069 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4773 -0.4982 1.3662 6 6 4.0703 -1.4005 2.4138 7 6 4.6011 -2.6729 1.7205 8 6 3.5323 -3.6129 1.4012 9 1 3.0279 -3.9016 2.3233 10 6 4.1432 -4.8599 0.7586 11 7 5.0167 -5.5293 1.7256 12 6 5.6768 -6.6761 1.3727 13 1 5.5538 -7.0868 0.3815 14 6 6.5041 -7.3107 2.2891 15 7 6.6536 -6.8106 3.4973 16 14 7.4050 -8.8746 1.8075 17 1 8.7278 -8.5260 1.2298 18 1 7.5985 -9.7246 3.0097 19 1 6.6050 -9.6165 0.8002 20 6 2.4955 -3.0087 0.4310 21 6 1.5803 -2.1058 1.2124 22 1 -0.3633 0.4136 0.9407 23 1 -0.3633 0.6079 -0.8286 24 1 -0.3633 -1.0215 -0.1122 25 1 1.8934 -0.5139 -0.8900 26 1 1.7710 1.9230 0.9406 27 1 3.1243 1.4445 -0.1118 28 1 1.5883 1.9876 -0.8287 29 1 3.6638 0.5380 1.6485 30 1 3.9694 -0.6947 0.4136 31 1 3.3041 -1.6718 3.1399 32 1 4.8905 -0.8883 2.9167 33 1 5.3175 -3.1625 2.3802 34 1 5.1088 -2.3879 0.7989 35 1 3.3470 -5.5401 0.4565 36 1 4.7249 -4.5698 -0.1164 37 1 5.1270 -5.1608 2.6160 38 1 7.2314 -7.2542 4.1378 39 1 3.0073 -2.4329 -0.3400 40 1 1.9153 -3.8084 -0.0295 41 1 1.5421 -2.4525 2.2451 42 1 0.5789 -2.1664 0.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -17.973620 kcal Electronic energy + Delta-G solvation = -18132.342130 eV Core-core repulsion = 15532.174571 eV Total energy + Delta-G solvation = -2600.167558 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78370 -37.83999 -35.74096 -33.70401 -32.92762 -31.70182 -28.65812 -27.79615 -26.26804 -25.39570 -23.39750 -22.21432 -21.09779 -19.97916 -19.17422 -17.46843 -16.86780 -16.35775 -15.96283 -15.77381 -15.38134 -15.17606 -14.62171 -14.20246 -14.13121 -13.60974 -13.45302 -13.29120 -13.03526 -12.90667 -12.80752 -12.78736 -12.68125 -12.28690 -12.15529 -11.95542 -11.85141 -11.67493 -11.48432 -11.42743 -11.32190 -10.95139 -10.92717 -9.04707 -9.01846 -7.97242 -5.26365 1.45139 1.47323 1.55930 2.54223 2.92902 3.35827 3.64794 3.79064 3.92063 4.06522 4.12881 4.19754 4.26341 4.42076 4.43805 4.45266 4.57241 4.67920 4.72223 4.82258 4.87911 4.90863 4.93426 4.99862 5.00685 5.05053 5.10896 5.16155 5.23100 5.30671 5.32976 5.39349 5.43982 5.50518 5.55127 5.55720 6.25041 6.28900 6.31525 7.31117 8.07202 8.31465 9.26404 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.054378 B = 0.004532 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.790304 B = 6176.847523 C = 6408.531766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 C -0.144 4.144 4 N -0.548 5.548 5 C 0.070 3.930 6 C -0.112 4.112 7 C -0.106 4.106 8 C -0.078 4.078 9 H 0.058 0.942 10 C 0.154 3.846 11 N -0.744 5.744 12 C -0.251 4.251 13 H 0.073 0.927 14 C -0.074 4.074 15 N -0.969 5.969 16 Si 0.975 3.025 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.270 1.270 20 C -0.127 4.127 21 C 0.059 3.941 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.017 0.983 36 H 0.012 0.988 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 16.266 -6.990 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.201 4.201 4 N -0.274 5.274 5 C -0.057 4.057 6 C -0.150 4.150 7 C -0.144 4.144 8 C -0.096 4.096 9 H 0.077 0.923 10 C 0.027 3.973 11 N -0.387 5.387 12 C -0.383 4.383 13 H 0.091 0.909 14 C -0.266 4.266 15 N -0.620 5.620 16 Si 0.804 3.196 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.195 1.195 20 C -0.166 4.166 21 C -0.068 4.068 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.207 0.793 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.916 16.341 -6.733 21.316 hybrid contribution 1.309 -1.455 -0.370 1.992 sum -10.607 14.886 -7.102 19.610 Atomic orbital electron populations 1.21876 0.93474 1.01952 1.02540 1.21669 0.96359 0.95076 0.90365 1.21891 1.00804 0.94775 1.02669 1.62065 1.13321 1.12849 1.39141 1.21723 0.86819 0.99868 0.97251 1.21365 1.00453 0.95043 0.98149 1.20517 0.97678 0.96179 1.00006 1.20205 0.96471 0.94351 0.98607 0.92342 1.20953 0.91843 0.92609 0.91867 1.42628 1.53996 1.28442 1.13665 1.19653 1.19690 1.01251 0.97665 0.90948 1.25581 1.02040 1.02907 0.96093 1.69817 1.43408 1.42791 1.05950 0.85116 0.78515 0.79171 0.76815 1.21304 1.21911 1.19467 1.21793 0.97330 0.99595 0.97893 1.21903 0.98362 0.86217 1.00336 0.92052 0.91037 0.92666 0.95129 0.91912 0.93016 0.91029 0.90031 0.95577 0.91292 0.90548 0.94171 0.93151 0.96522 0.97026 0.79293 0.93907 0.92181 0.90845 0.91656 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.93 71.98 0.64 -1.52 16 2 C 0.07 1.35 2.63 44.91 0.12 1.46 16 3 C -0.14 -2.24 8.38 71.98 0.60 -1.64 16 4 N -0.55 -11.99 4.58 -874.95 -4.01 -15.99 16 5 C 0.07 1.61 3.91 85.27 0.33 1.95 16 6 C -0.11 -2.98 5.63 30.22 0.17 -2.81 16 7 C -0.11 -3.52 4.44 28.86 0.13 -3.40 16 8 C -0.08 -2.61 1.80 -12.53 -0.02 -2.63 16 9 H 0.06 2.09 7.52 -2.39 -0.02 2.08 16 10 C 0.15 6.52 5.55 86.38 0.48 7.00 16 11 N -0.74 -39.65 5.25 -343.45 -1.80 -41.45 16 12 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 13 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 14 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 15 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 16 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 C -0.13 -3.34 4.94 30.21 0.15 -3.19 16 21 C 0.06 1.36 5.00 85.26 0.43 1.79 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.85 6.33 -2.39 -0.02 0.84 16 25 H 0.03 0.61 7.71 -2.39 -0.02 0.60 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.83 6.94 -2.38 -0.02 0.82 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.66 7.00 -2.38 -0.02 1.65 16 30 H 0.03 0.64 6.48 -2.39 -0.02 0.62 16 31 H 0.07 1.89 7.08 -2.39 -0.02 1.88 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.61 6.77 -2.38 -0.02 1.59 16 34 H 0.05 1.68 7.52 -2.39 -0.02 1.66 16 35 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.37 21.07 6.64 -92.71 -0.62 20.45 16 38 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 39 H 0.06 1.59 6.61 -2.39 -0.02 1.58 16 40 H 0.07 1.86 7.90 -2.39 -0.02 1.84 16 41 H 0.07 1.65 6.59 -2.39 -0.02 1.63 16 42 H 0.09 1.72 5.65 -2.39 -0.01 1.70 16 Total: -1.00 -64.20 310.16 1.20 -63.00 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.36 Total: 26.30 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 4.33 Total: -20.63 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -5.53 Total: -117.78 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -64.20 1.20 -63.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds