Wall clock time and date at job start Mon Mar 30 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47028 * 2 1 4 4 N 1.46898 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.47805 * 110.99985 * 66.04823 * 4 3 2 6 6 C 1.45863 * 112.91760 * 153.86318 * 5 4 3 7 7 C 1.54512 * 111.58911 * 61.33650 * 6 5 4 8 8 C 1.50463 * 108.84888 * 282.80000 * 7 6 5 9 9 C 1.50707 * 108.77382 * 331.24071 * 8 7 6 10 10 H 1.07997 * 119.99925 * 116.45235 * 9 8 7 11 11 C 1.37874 * 119.99737 * 296.45838 * 9 8 7 12 12 N 1.31514 * 120.00037 * 355.60541 * 11 9 8 13 13 Si 1.86795 * 120.00108 * 175.60287 * 11 9 8 14 14 H 1.48507 * 109.47105 * 59.99967 * 13 11 9 15 15 H 1.48504 * 109.47483 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47556 * 300.00257 * 13 11 9 17 17 C 1.52993 * 108.77261 * 213.07204 * 8 7 6 18 18 N 1.46901 * 109.47019 * 294.13296 * 17 8 7 19 19 C 1.54293 * 113.03160 * 92.15545 * 8 7 6 20 20 C 1.44272 * 111.00409 * 304.07034 * 4 3 2 21 21 H 1.08995 * 109.47670 * 59.99693 * 1 2 3 22 22 H 1.08999 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47121 * 299.99547 * 1 2 3 24 24 H 1.09002 * 109.46787 * 239.99817 * 2 1 3 25 25 H 1.09003 * 109.47084 * 120.00480 * 2 1 3 26 26 H 1.08998 * 109.47640 * 300.00663 * 3 2 1 27 27 H 1.08998 * 109.47014 * 60.00821 * 3 2 1 28 28 H 1.08995 * 108.79430 * 274.75581 * 5 4 3 29 29 H 1.09001 * 108.79056 * 33.09343 * 5 4 3 30 30 H 1.08999 * 109.05430 * 181.87224 * 6 5 4 31 31 H 1.08993 * 109.05930 * 300.85412 * 6 5 4 32 32 H 1.08998 * 109.57446 * 42.60928 * 7 6 5 33 33 H 1.09000 * 109.57469 * 162.99555 * 7 6 5 34 34 H 0.97002 * 120.00054 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47218 * 54.13208 * 17 8 7 36 36 H 1.09004 * 109.47189 * 174.13227 * 17 8 7 37 37 H 1.00895 * 111.00539 * 61.36044 * 18 17 8 38 38 H 1.00899 * 110.99810 * 185.31335 * 18 17 8 39 39 H 1.08997 * 108.91918 * 79.02849 * 19 8 7 40 40 H 1.09007 * 108.91816 * 197.67588 * 19 8 7 41 41 H 1.09000 * 108.97701 * 339.94785 * 20 4 3 42 42 H 1.08998 * 108.98387 * 98.66024 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5089 1.4424 0.0006 5 6 4.0391 0.8821 -1.2601 6 6 5.3688 1.3831 -1.5895 7 6 6.4025 1.0087 -0.5038 8 6 6.2232 1.9263 0.6751 9 6 5.6789 3.2437 0.1859 10 1 4.7017 3.5758 0.5041 11 6 6.4283 4.0249 -0.6679 12 7 7.6518 3.6630 -0.9869 13 14 5.7061 5.5973 -1.3715 14 1 5.3499 6.5182 -0.2622 15 1 6.7062 6.2499 -2.2542 16 1 4.4879 5.2744 -2.1570 17 6 7.5885 2.1708 1.3208 18 7 8.0920 0.9146 1.8920 19 6 5.2640 1.3582 1.7418 20 6 4.0256 0.6881 1.1166 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 4.0851 -0.2032 -1.1701 29 1 3.3582 1.1380 -2.0719 30 1 5.6836 0.9574 -2.5423 31 1 5.3276 2.4684 -1.6812 32 1 6.2454 -0.0234 -0.1904 33 1 7.4099 1.1215 -0.9043 34 1 8.1790 4.2124 -1.5879 35 1 8.2874 2.5330 0.5668 36 1 7.4886 2.9150 2.1110 37 1 8.2143 0.2149 1.1755 38 1 8.9509 1.0666 2.3992 39 1 5.7990 0.6222 2.3420 40 1 4.9352 2.1706 2.3900 41 1 3.2484 0.6012 1.8759 42 1 4.2977 -0.3103 0.7742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260330576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:49 Heat of formation + Delta-G solvation = 7.911258 kcal Electronic energy + Delta-G solvation = -19348.931550 eV Core-core repulsion = 16749.886444 eV Total energy + Delta-G solvation = -2599.045106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01328 -36.14484 -33.12588 -32.18764 -31.07727 -30.31777 -26.89230 -25.14268 -23.85414 -23.78944 -21.93785 -21.00878 -18.92151 -17.78042 -15.68541 -15.37218 -15.13727 -14.48217 -14.36271 -14.22205 -13.76519 -13.45022 -13.01224 -12.37747 -12.15968 -12.09542 -11.96474 -11.65952 -11.39128 -11.16905 -11.07671 -10.95564 -10.64775 -10.45939 -10.38886 -10.16443 -9.74163 -9.69864 -9.45405 -8.87940 -8.63953 -8.43813 -8.07356 -7.43979 -7.24912 -5.71007 -3.71257 3.42069 3.46685 3.51409 4.59109 4.72256 5.15917 5.17279 5.45459 5.47299 5.70528 5.78608 5.87116 5.91031 5.96558 6.01454 6.15303 6.22369 6.26313 6.30597 6.50145 6.56339 6.59434 6.69690 6.86910 6.94990 6.99112 7.09586 7.23616 7.39463 7.54187 7.70629 7.85977 7.94849 8.08478 8.10278 8.23312 8.25921 8.40838 8.52557 8.85162 9.27941 9.81356 11.25188 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.010306 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.539623 B = 2716.262979 C = 3501.222240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.164 4.164 3 C 0.054 3.946 4 N -0.498 5.498 5 C 0.081 3.919 6 C -0.122 4.122 7 C -0.074 4.074 8 C 0.082 3.918 9 C -0.451 4.451 10 H 0.067 0.933 11 C 0.050 3.950 12 N -0.901 5.901 13 Si 0.880 3.120 14 H -0.282 1.282 15 H -0.294 1.294 16 H -0.279 1.279 17 C 0.055 3.945 18 N -0.861 5.861 19 C -0.091 4.091 20 C 0.068 3.932 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.011 0.989 29 H 0.043 0.957 30 H 0.023 0.977 31 H 0.112 0.888 32 H 0.012 0.988 33 H 0.053 0.947 34 H 0.253 0.747 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.324 0.676 38 H 0.315 0.685 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -6.334 0.970 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C -0.074 4.074 4 N -0.220 5.220 5 C -0.046 4.046 6 C -0.159 4.159 7 C -0.112 4.112 8 C 0.081 3.919 9 C -0.491 4.491 10 H 0.085 0.915 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.709 3.291 14 H -0.208 1.208 15 H -0.220 1.220 16 H -0.205 1.205 17 C -0.075 4.075 18 N -0.388 5.388 19 C -0.129 4.129 20 C -0.061 4.061 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.130 0.870 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.280 -5.733 1.310 9.358 hybrid contribution 0.153 0.192 -1.187 1.213 sum -7.127 -5.541 0.123 9.028 Atomic orbital electron populations 1.21691 0.96168 1.00967 1.01576 1.22321 0.95957 1.00144 1.01932 1.22400 0.89033 0.94050 1.01951 1.61833 1.04084 1.53678 1.02400 1.20873 0.97914 0.94822 0.90986 1.20765 0.93028 1.06211 0.95924 1.21100 0.98096 0.95250 0.96793 1.17822 0.89921 0.94072 0.90088 1.21233 1.01683 1.01857 1.24294 0.91526 1.24904 0.95032 0.97190 0.97588 1.69791 1.08700 1.38787 1.36947 0.86847 0.78715 0.84446 0.79053 1.20786 1.22020 1.20496 1.22403 0.99889 0.87669 0.97501 1.59079 1.34144 1.13311 1.32285 1.21960 0.94202 0.98543 0.98221 1.21867 0.97213 0.94412 0.92616 0.92935 0.93399 0.92881 0.92302 0.92042 0.91505 0.91400 0.97069 0.93799 0.95811 0.86971 0.96914 0.92837 0.93669 0.90266 0.94483 0.86499 0.87598 0.92702 0.93999 0.94019 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.16 -2.23 5.38 -26.73 -0.14 -2.37 16 3 C 0.05 0.86 5.07 -3.83 -0.02 0.85 16 4 N -0.50 -9.56 3.09 -239.56 -0.74 -10.30 16 5 C 0.08 1.57 4.01 -6.70 -0.03 1.54 16 6 C -0.12 -2.69 5.20 -29.31 -0.15 -2.84 16 7 C -0.07 -1.67 3.46 -27.20 -0.09 -1.77 16 8 C 0.08 1.89 0.32 -156.25 -0.05 1.84 16 9 C -0.45 -11.52 4.97 -34.44 -0.17 -11.69 16 10 H 0.07 1.78 7.19 -52.49 -0.38 1.40 16 11 C 0.05 1.32 3.54 -17.82 -0.06 1.25 16 12 N -0.90 -24.13 9.79 55.43 0.54 -23.59 16 13 Si 0.88 21.19 29.48 -169.99 -5.01 16.18 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.05 1.27 5.06 -3.83 -0.02 1.25 16 18 N -0.86 -16.85 8.39 -10.37 -0.09 -16.94 16 19 C -0.09 -1.94 4.90 -25.50 -0.12 -2.06 16 20 C 0.07 1.28 4.00 -4.67 -0.02 1.26 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.83 7.17 -51.93 -0.37 0.45 16 25 H 0.06 0.86 6.65 -51.93 -0.35 0.51 16 26 H 0.07 1.04 7.89 -51.93 -0.41 0.64 16 27 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 28 H 0.01 0.21 6.90 -51.93 -0.36 -0.15 16 29 H 0.04 0.80 7.65 -51.93 -0.40 0.40 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 2.81 4.48 -51.93 -0.23 2.58 16 32 H 0.01 0.27 7.15 -51.93 -0.37 -0.11 16 33 H 0.05 1.31 7.05 -51.93 -0.37 0.94 16 34 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.08 2.05 5.39 -51.93 -0.28 1.77 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.32 6.16 8.21 -39.29 -0.32 5.84 16 38 H 0.31 5.51 9.08 -39.29 -0.36 5.16 16 39 H 0.05 1.15 6.98 -51.93 -0.36 0.79 16 40 H 0.04 0.93 7.97 -51.92 -0.41 0.52 16 41 H 0.04 0.72 6.81 -51.93 -0.35 0.37 16 42 H 0.02 0.44 6.51 -51.93 -0.34 0.11 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -25.91 298.12 -8.65 -34.55 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.33 Total: 9.62 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.51 Total: -14.01 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.28 Total: -50.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.01 Total: 16.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.91 -8.65 -34.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.462 kcal (2) G-P(sol) polarization free energy of solvation -25.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds