Wall clock time and date at job start Mon Mar 30 2020 03:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47028 * 2 1 4 4 N 1.46898 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.47805 * 110.99985 * 66.04823 * 4 3 2 6 6 C 1.45863 * 112.91760 * 153.86318 * 5 4 3 7 7 C 1.54512 * 111.58911 * 61.33650 * 6 5 4 8 8 C 1.50463 * 108.84888 * 282.80000 * 7 6 5 9 9 C 1.50707 * 108.77382 * 331.24071 * 8 7 6 10 10 H 1.07997 * 119.99925 * 116.45235 * 9 8 7 11 11 C 1.37874 * 119.99737 * 296.45838 * 9 8 7 12 12 N 1.31514 * 120.00037 * 355.60541 * 11 9 8 13 13 Si 1.86795 * 120.00108 * 175.60287 * 11 9 8 14 14 H 1.48507 * 109.47105 * 59.99967 * 13 11 9 15 15 H 1.48504 * 109.47483 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47556 * 300.00257 * 13 11 9 17 17 C 1.52993 * 108.77261 * 213.07204 * 8 7 6 18 18 N 1.46901 * 109.47019 * 294.13296 * 17 8 7 19 19 C 1.54293 * 113.03160 * 92.15545 * 8 7 6 20 20 C 1.44272 * 111.00409 * 304.07034 * 4 3 2 21 21 H 1.08995 * 109.47670 * 59.99693 * 1 2 3 22 22 H 1.08999 * 109.47156 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47121 * 299.99547 * 1 2 3 24 24 H 1.09002 * 109.46787 * 239.99817 * 2 1 3 25 25 H 1.09003 * 109.47084 * 120.00480 * 2 1 3 26 26 H 1.08998 * 109.47640 * 300.00663 * 3 2 1 27 27 H 1.08998 * 109.47014 * 60.00821 * 3 2 1 28 28 H 1.08995 * 108.79430 * 274.75581 * 5 4 3 29 29 H 1.09001 * 108.79056 * 33.09343 * 5 4 3 30 30 H 1.08999 * 109.05430 * 181.87224 * 6 5 4 31 31 H 1.08993 * 109.05930 * 300.85412 * 6 5 4 32 32 H 1.08998 * 109.57446 * 42.60928 * 7 6 5 33 33 H 1.09000 * 109.57469 * 162.99555 * 7 6 5 34 34 H 0.97002 * 120.00054 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47218 * 54.13208 * 17 8 7 36 36 H 1.09004 * 109.47189 * 174.13227 * 17 8 7 37 37 H 1.00895 * 111.00539 * 61.36044 * 18 17 8 38 38 H 1.00899 * 110.99810 * 185.31335 * 18 17 8 39 39 H 1.08997 * 108.91918 * 79.02849 * 19 8 7 40 40 H 1.09007 * 108.91816 * 197.67588 * 19 8 7 41 41 H 1.09000 * 108.97701 * 339.94785 * 20 4 3 42 42 H 1.08998 * 108.98387 * 98.66024 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5089 1.4424 0.0006 5 6 4.0391 0.8821 -1.2601 6 6 5.3688 1.3831 -1.5895 7 6 6.4025 1.0087 -0.5038 8 6 6.2232 1.9263 0.6751 9 6 5.6789 3.2437 0.1859 10 1 4.7017 3.5758 0.5041 11 6 6.4283 4.0249 -0.6679 12 7 7.6518 3.6630 -0.9869 13 14 5.7061 5.5973 -1.3715 14 1 5.3499 6.5182 -0.2622 15 1 6.7062 6.2499 -2.2542 16 1 4.4879 5.2744 -2.1570 17 6 7.5885 2.1708 1.3208 18 7 8.0920 0.9146 1.8920 19 6 5.2640 1.3582 1.7418 20 6 4.0256 0.6881 1.1166 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 4.0851 -0.2032 -1.1701 29 1 3.3582 1.1380 -2.0719 30 1 5.6836 0.9574 -2.5423 31 1 5.3276 2.4684 -1.6812 32 1 6.2454 -0.0234 -0.1904 33 1 7.4099 1.1215 -0.9043 34 1 8.1790 4.2124 -1.5879 35 1 8.2874 2.5330 0.5668 36 1 7.4886 2.9150 2.1110 37 1 8.2143 0.2149 1.1755 38 1 8.9509 1.0666 2.3992 39 1 5.7990 0.6222 2.3420 40 1 4.9352 2.1706 2.3900 41 1 3.2484 0.6012 1.8759 42 1 4.2977 -0.3103 0.7742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260330576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:48 Heat of formation + Delta-G solvation = -7.731949 kcal Electronic energy + Delta-G solvation = -19349.609890 eV Core-core repulsion = 16749.886444 eV Total energy + Delta-G solvation = -2599.723446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61207 -37.73688 -34.56378 -33.97365 -32.71601 -31.92968 -28.44706 -26.88568 -25.67359 -25.20632 -23.36474 -22.53866 -20.50025 -19.55654 -17.55572 -16.93521 -16.66597 -16.32659 -15.94286 -15.62526 -15.36329 -14.94311 -14.43256 -13.96842 -13.80327 -13.66445 -13.45071 -13.32787 -12.93596 -12.70719 -12.58934 -12.42582 -12.30862 -12.20578 -11.93627 -11.66227 -11.41647 -11.31188 -11.16699 -10.69121 -10.46113 -10.35291 -10.04258 -9.18883 -8.70465 -7.71354 -5.75680 1.46919 1.49519 1.54923 2.59930 3.29673 3.45424 4.08176 4.11243 4.21358 4.27098 4.36948 4.49854 4.63449 4.67333 4.73163 4.80446 4.83508 4.89032 4.96673 5.07247 5.14480 5.19611 5.20839 5.22702 5.32714 5.35069 5.44028 5.46827 5.64720 5.71706 5.82788 6.01058 6.14344 6.29092 6.39054 6.53903 6.60102 6.71113 6.89455 6.91649 7.27470 7.77818 9.20717 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.010306 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.539623 B = 2716.262979 C = 3501.222240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.155 4.155 3 C 0.055 3.945 4 N -0.523 5.523 5 C 0.085 3.915 6 C -0.119 4.119 7 C -0.062 4.062 8 C 0.078 3.922 9 C -0.447 4.447 10 H 0.052 0.948 11 C 0.018 3.982 12 N -0.915 5.915 13 Si 0.921 3.079 14 H -0.285 1.285 15 H -0.298 1.298 16 H -0.278 1.278 17 C 0.066 3.934 18 N -0.850 5.850 19 C -0.086 4.086 20 C 0.076 3.924 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.028 0.972 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.331 0.669 38 H 0.329 0.671 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.059 0.941 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 -7.557 1.153 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C -0.073 4.073 4 N -0.245 5.245 5 C -0.042 4.042 6 C -0.157 4.157 7 C -0.100 4.100 8 C 0.078 3.922 9 C -0.486 4.486 10 H 0.071 0.929 11 C -0.177 4.177 12 N -0.558 5.558 13 Si 0.750 3.250 14 H -0.211 1.211 15 H -0.224 1.224 16 H -0.204 1.204 17 C -0.064 4.064 18 N -0.378 5.378 19 C -0.125 4.125 20 C -0.053 4.053 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.746 -6.963 1.501 11.279 hybrid contribution 0.622 0.587 -1.215 1.486 sum -8.124 -6.375 0.286 10.330 Atomic orbital electron populations 1.21655 0.94293 1.01977 1.02067 1.22198 0.97540 0.98079 1.01634 1.22412 0.86951 0.95797 1.02124 1.61680 1.06317 1.54279 1.02248 1.20736 0.96496 0.95349 0.91588 1.20686 0.94637 1.04274 0.96090 1.20928 0.96942 0.95618 0.96544 1.17844 0.90164 0.93394 0.90836 1.21307 1.00824 1.02757 1.23736 0.92936 1.25293 0.95312 0.98960 0.98179 1.69923 1.09255 1.39261 1.37376 0.86201 0.78051 0.82410 0.78299 1.21118 1.22425 1.20355 1.22086 0.99741 0.88586 0.95983 1.58944 1.35145 1.11638 1.32059 1.21882 0.95037 0.98105 0.97462 1.21734 0.96543 0.94014 0.93029 0.92533 0.92146 0.92363 0.92666 0.92216 0.91446 0.91189 0.95793 0.92743 0.95326 0.90017 0.95694 0.95274 0.94306 0.92869 0.96676 0.85734 0.85997 0.92367 0.95688 0.92243 0.95371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.16 -3.76 5.38 30.59 0.16 -3.59 16 3 C 0.06 1.63 5.07 86.30 0.44 2.06 16 4 N -0.52 -19.14 3.09 -911.83 -2.81 -21.95 16 5 C 0.09 3.14 4.01 83.94 0.34 3.47 16 6 C -0.12 -5.16 5.20 28.92 0.15 -5.01 16 7 C -0.06 -2.76 3.46 30.29 0.10 -2.66 16 8 C 0.08 3.61 0.32 -53.31 -0.02 3.59 16 9 C -0.45 -22.90 4.97 25.60 0.13 -22.77 16 10 H 0.05 2.81 7.19 -2.91 -0.02 2.79 16 11 C 0.02 0.95 3.54 84.65 0.30 1.25 16 12 N -0.92 -49.84 9.79 21.45 0.21 -49.63 16 13 Si 0.92 43.81 29.48 68.60 2.02 45.83 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 C 0.07 3.10 5.06 86.30 0.44 3.54 16 18 N -0.85 -32.39 8.39 -186.72 -1.57 -33.96 16 19 C -0.09 -3.59 4.90 31.39 0.15 -3.43 16 20 C 0.08 2.69 4.00 87.16 0.35 3.04 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 24 H 0.05 1.38 7.17 -2.39 -0.02 1.37 16 25 H 0.06 1.47 6.65 -2.39 -0.02 1.46 16 26 H 0.07 1.96 7.89 -2.39 -0.02 1.95 16 27 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 28 H 0.02 0.83 6.90 -2.39 -0.02 0.81 16 29 H 0.05 1.87 7.65 -2.39 -0.02 1.85 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 4.08 4.48 -2.39 -0.01 4.07 16 32 H 0.02 1.02 7.15 -2.39 -0.02 1.00 16 33 H 0.03 1.41 7.05 -2.39 -0.02 1.39 16 34 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.05 2.80 5.39 -2.38 -0.01 2.79 16 36 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.33 12.14 8.21 -89.70 -0.74 11.41 16 38 H 0.33 11.13 9.08 -89.69 -0.81 10.31 16 39 H 0.06 2.35 6.98 -2.39 -0.02 2.33 16 40 H 0.02 1.09 7.97 -2.38 -0.02 1.07 16 41 H 0.06 1.90 6.81 -2.39 -0.02 1.89 16 42 H 0.03 0.98 6.51 -2.39 -0.02 0.97 16 Total: -1.00 -54.56 298.12 0.56 -54.01 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.55 Total: 28.22 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.26 Total: -22.52 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -4.17 Total: -105.54 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.02 Total: 45.83 kcal Total: -54.56 0.56 -54.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.274 kcal (2) G-P(sol) polarization free energy of solvation -54.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds