Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 N 1.46907 * 109.46931 * 183.14861 * 3 2 1 5 5 C 1.47633 * 110.99864 * 61.26541 * 4 3 2 6 6 C 1.50815 * 108.04552 * 150.34584 * 5 4 3 7 7 C 1.53818 * 111.62311 * 95.05165 * 6 5 4 8 8 C 1.54170 * 111.97538 * 319.04263 * 7 6 5 9 9 C 1.50695 * 108.77297 * 79.23428 * 8 7 6 10 10 H 1.08009 * 120.00067 * 357.56171 * 9 8 7 11 11 C 1.37876 * 120.00180 * 177.55984 * 9 8 7 12 12 N 1.31511 * 119.99853 * 5.30334 * 11 9 8 13 13 Si 1.86805 * 120.00103 * 185.30484 * 11 9 8 14 14 H 1.48503 * 109.47151 * 60.00036 * 13 11 9 15 15 H 1.48500 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47188 * 300.00152 * 13 11 9 17 17 C 1.52994 * 108.85716 * 197.67898 * 8 7 6 18 18 N 1.46900 * 109.47026 * 305.90869 * 17 8 7 19 19 C 1.50758 * 112.60784 * 318.48659 * 8 7 6 20 20 C 1.39778 * 110.99534 * 292.37477 * 4 3 2 21 21 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46868 * 299.99803 * 1 2 3 23 23 H 1.09006 * 109.47511 * 59.99815 * 1 2 3 24 24 H 1.08998 * 109.46903 * 239.99973 * 2 1 3 25 25 H 1.08995 * 109.47294 * 119.99703 * 2 1 3 26 26 H 1.08996 * 109.47368 * 63.14448 * 3 2 1 27 27 H 1.08999 * 109.47173 * 303.14351 * 3 2 1 28 28 H 1.09000 * 109.74690 * 269.98183 * 5 4 3 29 29 H 1.08994 * 109.74741 * 30.66200 * 5 4 3 30 30 H 1.08998 * 109.05133 * 215.60294 * 6 5 4 31 31 H 1.08999 * 109.05155 * 334.57115 * 6 5 4 32 32 H 1.09002 * 108.98379 * 198.39507 * 7 6 5 33 33 H 1.09011 * 108.98060 * 79.68454 * 7 6 5 34 34 H 0.97000 * 119.99694 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47149 * 185.91023 * 17 8 7 36 36 H 1.09005 * 109.47305 * 65.90896 * 17 8 7 37 37 H 1.00909 * 110.99770 * 173.64266 * 18 17 8 38 38 H 1.00900 * 110.99978 * 297.59236 * 18 17 8 39 39 H 1.08998 * 109.54078 * 212.87397 * 19 8 7 40 40 H 1.08997 * 109.54402 * 333.14872 * 19 8 7 41 41 H 1.09001 * 109.02317 * 68.54594 * 20 4 3 42 42 H 1.08998 * 109.02224 * 309.72210 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5071 1.4433 -0.0761 5 6 3.9725 0.8031 -1.3223 6 6 5.2846 1.4368 -1.7112 7 6 6.4827 0.6219 -1.1950 8 6 6.2505 0.0983 0.2363 9 6 5.3662 -1.1201 0.1695 10 1 4.9794 -1.4552 -0.7816 11 6 5.0509 -1.8072 1.3225 12 7 5.4344 -1.3416 2.4911 13 14 4.0791 -3.3996 1.2248 14 1 4.8308 -4.3891 0.4117 15 1 3.8730 -3.9385 2.5932 16 1 2.7617 -3.1374 0.5919 17 6 7.5977 -0.3019 0.8411 18 7 8.2737 -1.2506 -0.0538 19 6 5.6005 1.1236 1.1302 20 6 4.0694 0.9247 1.0938 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7234 1.9399 0.9168 27 1 1.6313 1.9724 -0.8605 28 1 4.1140 -0.2649 -1.1571 29 1 3.2386 0.9594 -2.1129 30 1 5.3402 1.5017 -2.7979 31 1 5.3323 2.4419 -1.2922 32 1 7.3707 1.2540 -1.2017 33 1 6.6479 -0.2258 -1.8602 34 1 5.2130 -1.8252 3.3023 35 1 7.4354 -0.7705 1.8117 36 1 8.2182 0.5856 0.9653 37 1 9.2080 -1.4507 0.2705 38 1 7.7364 -2.0988 -0.1540 39 1 5.9604 0.9977 2.1513 40 1 5.8468 2.1246 0.7761 41 1 3.8481 -0.1410 1.1524 42 1 3.6256 1.4261 1.9539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260330597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = 9.507380 kcal Electronic energy + Delta-G solvation = -19680.981767 eV Core-core repulsion = 17082.005874 eV Total energy + Delta-G solvation = -2598.975893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13634 -35.90801 -33.01851 -32.27716 -31.19406 -30.01596 -26.46713 -25.60839 -24.34645 -23.44631 -21.27730 -21.14015 -18.87636 -17.96976 -15.67105 -15.32126 -14.89902 -14.68843 -14.38456 -13.80951 -13.69789 -13.25969 -13.00626 -12.83835 -12.18934 -11.94943 -11.74333 -11.44500 -11.37599 -11.15863 -11.00852 -10.77139 -10.69991 -10.49425 -10.23068 -10.09157 -9.84093 -9.59727 -9.32879 -8.93749 -8.70925 -8.54732 -8.43351 -7.38103 -6.79617 -6.00960 -4.00968 3.22284 3.28965 3.32868 4.34466 5.04987 5.20622 5.43091 5.45842 5.74408 5.90857 5.92007 6.00226 6.13940 6.20886 6.25387 6.32258 6.39020 6.51016 6.58929 6.65850 6.73907 6.81456 6.83669 6.91537 6.98343 7.16834 7.19238 7.28299 7.35345 7.47175 7.58506 7.75231 7.87294 7.94083 8.04409 8.28372 8.45978 8.53266 8.63283 8.67552 8.96470 9.51476 10.97999 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.013140 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.842246 B = 2130.317116 C = 2970.242768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.161 4.161 3 C 0.066 3.934 4 N -0.549 5.549 5 C 0.046 3.954 6 C -0.108 4.108 7 C -0.084 4.084 8 C 0.071 3.929 9 C -0.487 4.487 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.879 5.879 13 Si 0.870 3.130 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.070 3.930 18 N -0.848 5.848 19 C -0.074 4.074 20 C 0.074 3.926 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.057 0.943 36 H 0.022 0.978 37 H 0.309 0.691 38 H 0.341 0.659 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.080 0.920 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 2.337 -3.202 5.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.200 4.200 3 C -0.062 4.062 4 N -0.272 5.272 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.122 4.122 8 C 0.070 3.930 9 C -0.525 4.525 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.518 5.518 13 Si 0.698 3.302 14 H -0.204 1.204 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.061 4.061 18 N -0.375 5.375 19 C -0.113 4.113 20 C -0.054 4.054 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.040 0.960 37 H 0.118 0.882 38 H 0.154 0.846 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.480 3.312 -3.551 5.975 hybrid contribution -0.807 -2.352 1.008 2.683 sum -4.287 0.960 -2.543 5.076 Atomic orbital electron populations 1.21703 0.96754 1.00843 1.01035 1.22203 0.95074 0.99895 1.02864 1.22104 0.89106 0.94377 1.00647 1.59276 1.04442 1.59450 1.04076 1.22167 0.94773 1.01497 0.89578 1.21322 0.95781 0.99937 0.97584 1.21727 0.94422 0.97528 0.98522 1.18021 0.91625 0.93450 0.89907 1.21138 1.28704 1.10228 0.92431 0.92302 1.24851 0.96463 0.96771 0.95778 1.69949 1.46333 1.38246 0.97228 0.87007 0.81064 0.85074 0.77072 1.20371 1.21510 1.20167 1.21956 0.94917 0.93293 0.95906 1.58855 1.04913 1.18794 1.54947 1.21151 0.94305 0.95726 1.00090 1.21065 0.95158 1.01101 0.88057 0.93519 0.93180 0.93227 0.91948 0.91584 0.92250 0.92379 0.88945 0.94411 0.94571 0.92565 0.95253 0.93136 0.93158 0.92485 0.95996 0.88185 0.84614 0.91879 0.96005 0.90209 0.95886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.16 -2.82 5.42 -26.73 -0.14 -2.96 16 3 C 0.07 1.16 5.14 -3.82 -0.02 1.14 16 4 N -0.55 -11.03 4.12 -240.00 -0.99 -12.02 16 5 C 0.05 0.91 4.07 -4.52 -0.02 0.89 16 6 C -0.11 -2.11 5.41 -27.40 -0.15 -2.26 16 7 C -0.08 -1.78 4.32 -25.69 -0.11 -1.89 16 8 C 0.07 1.59 0.35 -156.18 -0.06 1.54 16 9 C -0.49 -11.54 3.66 -34.44 -0.13 -11.66 16 10 H 0.06 1.46 5.93 -52.48 -0.31 1.14 16 11 C 0.06 1.52 3.36 -17.82 -0.06 1.46 16 12 N -0.88 -22.24 9.42 55.43 0.52 -21.72 16 13 Si 0.87 19.75 29.54 -169.99 -5.02 14.73 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.07 1.57 5.15 -3.83 -0.02 1.55 16 18 N -0.85 -17.23 8.85 -10.37 -0.09 -17.33 16 19 C -0.07 -1.70 4.23 -27.10 -0.11 -1.81 16 20 C 0.07 1.65 4.12 -6.74 -0.03 1.63 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.15 7.00 -51.93 -0.36 0.78 16 25 H 0.07 1.32 6.92 -51.93 -0.36 0.96 16 26 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 27 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 28 H 0.09 2.04 3.66 -51.93 -0.19 1.85 16 29 H 0.04 0.69 7.74 -51.93 -0.40 0.28 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.13 7.26 -51.93 -0.38 0.75 16 32 H 0.03 0.61 7.99 -51.93 -0.41 0.20 16 33 H 0.05 1.10 7.82 -51.92 -0.41 0.70 16 34 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.06 1.42 6.03 -51.93 -0.31 1.10 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.31 5.55 9.08 -39.29 -0.36 5.20 16 38 H 0.34 7.25 8.19 -39.29 -0.32 6.93 16 39 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 40 H 0.02 0.49 7.10 -51.93 -0.37 0.12 16 41 H 0.08 1.93 2.88 -51.93 -0.15 1.78 16 42 H 0.02 0.52 7.83 -51.93 -0.41 0.11 16 LS Contribution 295.66 15.07 4.46 4.46 Total: -1.00 -24.05 295.66 -8.77 -32.82 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.17 Total: 13.16 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.48 Total: -14.10 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.56 Total: -51.07 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -24.05 -8.77 -32.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.327 kcal (2) G-P(sol) polarization free energy of solvation -24.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds