Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46926 * 2 1 4 4 N 1.46907 * 109.46931 * 183.14861 * 3 2 1 5 5 C 1.47633 * 110.99864 * 61.26541 * 4 3 2 6 6 C 1.50815 * 108.04552 * 150.34584 * 5 4 3 7 7 C 1.53818 * 111.62311 * 95.05165 * 6 5 4 8 8 C 1.54170 * 111.97538 * 319.04263 * 7 6 5 9 9 C 1.50695 * 108.77297 * 79.23428 * 8 7 6 10 10 H 1.08009 * 120.00067 * 357.56171 * 9 8 7 11 11 C 1.37876 * 120.00180 * 177.55984 * 9 8 7 12 12 N 1.31511 * 119.99853 * 5.30334 * 11 9 8 13 13 Si 1.86805 * 120.00103 * 185.30484 * 11 9 8 14 14 H 1.48503 * 109.47151 * 60.00036 * 13 11 9 15 15 H 1.48500 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47188 * 300.00152 * 13 11 9 17 17 C 1.52994 * 108.85716 * 197.67898 * 8 7 6 18 18 N 1.46900 * 109.47026 * 305.90869 * 17 8 7 19 19 C 1.50758 * 112.60784 * 318.48659 * 8 7 6 20 20 C 1.39778 * 110.99534 * 292.37477 * 4 3 2 21 21 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46868 * 299.99803 * 1 2 3 23 23 H 1.09006 * 109.47511 * 59.99815 * 1 2 3 24 24 H 1.08998 * 109.46903 * 239.99973 * 2 1 3 25 25 H 1.08995 * 109.47294 * 119.99703 * 2 1 3 26 26 H 1.08996 * 109.47368 * 63.14448 * 3 2 1 27 27 H 1.08999 * 109.47173 * 303.14351 * 3 2 1 28 28 H 1.09000 * 109.74690 * 269.98183 * 5 4 3 29 29 H 1.08994 * 109.74741 * 30.66200 * 5 4 3 30 30 H 1.08998 * 109.05133 * 215.60294 * 6 5 4 31 31 H 1.08999 * 109.05155 * 334.57115 * 6 5 4 32 32 H 1.09002 * 108.98379 * 198.39507 * 7 6 5 33 33 H 1.09011 * 108.98060 * 79.68454 * 7 6 5 34 34 H 0.97000 * 119.99694 * 180.02562 * 12 11 9 35 35 H 1.08997 * 109.47149 * 185.91023 * 17 8 7 36 36 H 1.09005 * 109.47305 * 65.90896 * 17 8 7 37 37 H 1.00909 * 110.99770 * 173.64266 * 18 17 8 38 38 H 1.00900 * 110.99978 * 297.59236 * 18 17 8 39 39 H 1.08998 * 109.54078 * 212.87397 * 19 8 7 40 40 H 1.08997 * 109.54402 * 333.14872 * 19 8 7 41 41 H 1.09001 * 109.02317 * 68.54594 * 20 4 3 42 42 H 1.08998 * 109.02224 * 309.72210 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5071 1.4433 -0.0761 5 6 3.9725 0.8031 -1.3223 6 6 5.2846 1.4368 -1.7112 7 6 6.4827 0.6219 -1.1950 8 6 6.2505 0.0983 0.2363 9 6 5.3662 -1.1201 0.1695 10 1 4.9794 -1.4552 -0.7816 11 6 5.0509 -1.8072 1.3225 12 7 5.4344 -1.3416 2.4911 13 14 4.0791 -3.3996 1.2248 14 1 4.8308 -4.3891 0.4117 15 1 3.8730 -3.9385 2.5932 16 1 2.7617 -3.1374 0.5919 17 6 7.5977 -0.3019 0.8411 18 7 8.2737 -1.2506 -0.0538 19 6 5.6005 1.1236 1.1302 20 6 4.0694 0.9247 1.0938 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7234 1.9399 0.9168 27 1 1.6313 1.9724 -0.8605 28 1 4.1140 -0.2649 -1.1571 29 1 3.2386 0.9594 -2.1129 30 1 5.3402 1.5017 -2.7979 31 1 5.3323 2.4419 -1.2922 32 1 7.3707 1.2540 -1.2017 33 1 6.6479 -0.2258 -1.8602 34 1 5.2130 -1.8252 3.3023 35 1 7.4354 -0.7705 1.8117 36 1 8.2182 0.5856 0.9653 37 1 9.2080 -1.4507 0.2705 38 1 7.7364 -2.0988 -0.1540 39 1 5.9604 0.9977 2.1513 40 1 5.8468 2.1246 0.7761 41 1 3.8481 -0.1410 1.1524 42 1 3.6256 1.4261 1.9539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260330597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -5.156749 kcal Electronic energy + Delta-G solvation = -19681.617652 eV Core-core repulsion = 17082.005874 eV Total energy + Delta-G solvation = -2599.611777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83161 -37.54772 -34.58400 -34.05869 -32.77408 -31.76236 -28.06880 -27.38333 -26.10158 -24.96724 -22.92593 -22.70818 -20.56222 -19.71321 -17.54774 -16.99166 -16.62158 -16.31091 -15.98554 -15.49984 -15.26548 -14.96045 -14.61995 -14.37568 -13.80469 -13.66957 -13.33844 -13.04570 -12.91439 -12.78668 -12.73222 -12.45245 -12.28690 -12.19492 -11.89032 -11.68389 -11.48091 -11.20722 -11.02629 -10.73400 -10.48459 -10.37757 -10.31169 -9.12196 -8.46904 -7.91651 -5.93366 1.38074 1.43760 1.45791 2.46283 3.29255 3.50105 4.09628 4.15754 4.21774 4.38862 4.48222 4.53080 4.61545 4.73207 4.75618 4.85876 4.90945 4.97072 5.00637 5.10307 5.17085 5.19285 5.24902 5.32110 5.41127 5.43522 5.51479 5.54165 5.60722 5.66031 5.78374 5.86822 6.05984 6.13422 6.22420 6.56216 6.70567 6.75426 6.92643 6.98506 7.13478 7.59840 9.05486 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.013140 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.842246 B = 2130.317116 C = 2970.242768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C 0.067 3.933 4 N -0.554 5.554 5 C 0.050 3.950 6 C -0.104 4.104 7 C -0.077 4.077 8 C 0.067 3.933 9 C -0.474 4.474 10 H 0.052 0.948 11 C 0.036 3.964 12 N -0.896 5.896 13 Si 0.909 3.091 14 H -0.277 1.277 15 H -0.298 1.298 16 H -0.277 1.277 17 C 0.076 3.924 18 N -0.840 5.840 19 C -0.067 4.067 20 C 0.088 3.912 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.042 0.958 34 H 0.252 0.748 35 H 0.031 0.969 36 H 0.022 0.978 37 H 0.325 0.675 38 H 0.337 0.663 39 H 0.038 0.962 40 H 0.022 0.978 41 H 0.061 0.939 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 2.862 -4.689 7.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.061 4.061 4 N -0.277 5.277 5 C -0.076 4.076 6 C -0.142 4.142 7 C -0.115 4.115 8 C 0.067 3.933 9 C -0.512 4.512 10 H 0.070 0.930 11 C -0.163 4.163 12 N -0.536 5.536 13 Si 0.737 3.263 14 H -0.202 1.202 15 H -0.224 1.224 16 H -0.203 1.203 17 C -0.055 4.055 18 N -0.368 5.368 19 C -0.106 4.106 20 C -0.041 4.041 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.340 3.834 -5.053 7.686 hybrid contribution -0.525 -2.498 1.459 2.940 sum -4.864 1.336 -3.594 6.194 Atomic orbital electron populations 1.21654 0.94029 1.01510 1.02520 1.22110 0.97476 0.99258 1.00669 1.22193 0.87389 0.94627 1.01928 1.59260 1.06152 1.58995 1.03331 1.22096 0.95610 0.99991 0.89926 1.21285 0.94778 0.99117 0.98998 1.21624 0.95311 0.97404 0.97165 1.18053 0.91406 0.93013 0.90857 1.21145 1.28084 1.10189 0.91803 0.93050 1.25168 0.97142 0.98237 0.95709 1.70059 1.47396 1.38788 0.97336 0.86396 0.80258 0.83303 0.76329 1.20246 1.22410 1.20311 1.21792 0.95181 0.93484 0.95019 1.58795 1.05557 1.18224 1.54221 1.21055 0.95009 0.95842 0.98737 1.20811 0.94626 0.99802 0.88865 0.93322 0.92273 0.91155 0.93022 0.94887 0.91918 0.89969 0.91197 0.92193 0.92211 0.92923 0.95326 0.93867 0.93843 0.95036 0.95922 0.86474 0.85084 0.94309 0.95916 0.92107 0.96932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.16 -5.23 5.42 30.60 0.17 -5.06 16 3 C 0.07 2.18 5.14 86.30 0.44 2.63 16 4 N -0.55 -21.46 4.12 -913.22 -3.76 -25.22 16 5 C 0.05 1.88 4.07 85.45 0.35 2.22 16 6 C -0.10 -3.81 5.41 30.16 0.16 -3.65 16 7 C -0.08 -3.16 4.32 31.27 0.14 -3.02 16 8 C 0.07 3.02 0.35 -53.26 -0.02 3.00 16 9 C -0.47 -22.40 3.66 25.60 0.09 -22.31 16 10 H 0.05 2.52 5.93 -2.91 -0.02 2.50 16 11 C 0.04 1.78 3.36 84.65 0.28 2.06 16 12 N -0.90 -46.21 9.42 21.45 0.20 -46.01 16 13 Si 0.91 40.77 29.54 68.60 2.03 42.80 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.08 3.42 5.15 86.30 0.44 3.86 16 18 N -0.84 -33.42 8.85 -186.72 -1.65 -35.07 16 19 C -0.07 -3.11 4.23 30.35 0.13 -2.98 16 20 C 0.09 3.91 4.12 88.07 0.36 4.27 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 25 H 0.03 1.31 6.92 -2.39 -0.02 1.29 16 26 H 0.06 2.02 7.88 -2.39 -0.02 2.00 16 27 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 28 H 0.07 3.00 3.66 -2.39 -0.01 2.99 16 29 H 0.06 1.99 7.74 -2.39 -0.02 1.97 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.98 7.26 -2.39 -0.02 1.97 16 32 H 0.03 1.15 7.99 -2.39 -0.02 1.13 16 33 H 0.04 1.81 7.82 -2.38 -0.02 1.79 16 34 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 35 H 0.03 1.59 6.03 -2.39 -0.01 1.57 16 36 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.32 11.27 9.08 -89.69 -0.81 10.46 16 38 H 0.34 14.07 8.19 -89.69 -0.73 13.34 16 39 H 0.04 1.95 6.91 -2.39 -0.02 1.93 16 40 H 0.02 1.01 7.10 -2.39 -0.02 0.99 16 41 H 0.06 2.98 2.88 -2.39 -0.01 2.97 16 42 H 0.01 0.56 7.83 -2.39 -0.02 0.54 16 Total: -1.00 -50.42 295.66 -0.46 -50.88 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.54 Total: 34.50 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.26 Total: -21.87 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -5.21 Total: -106.30 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -50.42 -0.46 -50.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260330597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.723 kcal (2) G-P(sol) polarization free energy of solvation -50.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds