Wall clock time and date at job start Mon Mar 30 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 N 1.46903 * 109.47162 * 120.00054 * 2 1 3 5 5 C 1.48001 * 110.99919 * 66.13148 * 4 2 1 6 6 C 1.50445 * 112.81754 * 84.83848 * 5 4 2 7 7 C 1.54304 * 108.49230 * 93.73540 * 6 5 4 8 8 C 1.45880 * 112.19438 * 281.44885 * 7 6 5 9 9 C 1.54319 * 112.18148 * 61.11359 * 8 7 6 10 10 H 1.08997 * 109.62427 * 41.18867 * 9 8 7 11 11 N 1.46503 * 109.63086 * 161.77870 * 9 8 7 12 12 C 1.46500 * 119.99638 * 60.00707 * 11 9 8 13 13 C 1.36930 * 119.99769 * 239.99923 * 11 9 8 14 14 H 1.08003 * 120.00221 * 23.60931 * 13 11 9 15 15 C 1.38812 * 119.99848 * 203.59730 * 13 11 9 16 16 N 1.31618 * 119.99881 * 14.04730 * 15 13 11 17 17 Si 1.86806 * 120.00144 * 194.04124 * 15 13 11 18 18 H 1.48498 * 109.47044 * 90.00198 * 17 15 13 19 19 H 1.48502 * 109.47070 * 210.00522 * 17 15 13 20 20 H 1.48504 * 109.46739 * 330.00171 * 17 15 13 21 21 C 1.48000 * 110.99951 * 194.85311 * 4 2 1 22 22 H 1.08999 * 109.47304 * 293.14361 * 1 2 3 23 23 H 1.08995 * 109.47540 * 53.14845 * 1 2 3 24 24 H 1.09009 * 109.47133 * 173.15011 * 1 2 3 25 25 H 1.08999 * 109.46744 * 239.99749 * 2 1 3 26 26 H 1.08996 * 109.46672 * 60.00182 * 3 2 1 27 27 H 1.08997 * 109.46957 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46739 * 300.00373 * 3 2 1 29 29 H 1.09003 * 108.81232 * 323.97847 * 5 4 2 30 30 H 1.09004 * 108.72346 * 205.63824 * 5 4 2 31 31 H 1.08997 * 109.63483 * 334.02966 * 6 5 4 32 32 H 1.09009 * 109.63099 * 213.42917 * 6 5 4 33 33 H 1.09001 * 108.93948 * 160.75192 * 7 6 5 34 34 H 1.08996 * 108.86803 * 42.09878 * 7 6 5 35 35 H 1.09002 * 108.93835 * 300.42238 * 8 7 6 36 36 H 1.08994 * 108.94348 * 181.81482 * 8 7 6 37 37 H 1.09000 * 109.47314 * 92.72899 * 12 11 9 38 38 H 1.08997 * 109.46580 * 212.72770 * 12 11 9 39 39 H 1.08997 * 109.47392 * 332.72544 * 12 11 9 40 40 H 0.97003 * 119.99887 * 179.97438 * 16 15 13 41 41 H 1.09001 * 108.81118 * 70.47642 * 21 4 2 42 42 H 1.09007 * 108.80807 * 312.20686 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6694 -2.1300 1.1621 6 6 2.6661 -2.9536 0.3930 7 6 3.7040 -3.5182 1.3855 8 6 4.7003 -2.5231 1.7665 9 6 4.0671 -1.3045 2.4705 10 1 3.2943 -1.6416 3.1614 11 7 5.0999 -0.5674 3.2026 12 6 6.2448 -0.0023 2.4841 13 6 4.9951 -0.4065 4.5584 14 1 4.4083 -1.1013 5.1409 15 6 5.6433 0.6495 5.1841 16 7 6.1227 1.6445 4.4683 17 14 5.8351 0.6585 7.0423 18 1 7.1057 -0.0151 7.4121 19 1 5.8577 2.0607 7.5308 20 1 4.6940 -0.0628 7.6611 21 6 3.4556 -0.4132 1.4240 22 1 -0.3634 0.4039 0.9449 23 1 -0.3634 0.6163 -0.8223 24 1 -0.3634 -1.0204 -0.1226 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9562 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 0.6892 -2.2410 0.6983 30 1 1.6183 -2.5044 2.1846 31 1 3.1677 -2.3270 -0.3445 32 1 2.1537 -3.7751 -0.1077 33 1 4.2098 -4.3664 0.9241 34 1 3.1855 -3.8605 2.2811 35 1 5.2212 -2.1832 0.8713 36 1 5.4222 -2.9850 2.4399 37 1 6.0256 1.0281 2.2043 38 1 7.1244 -0.0248 3.1274 39 1 6.4362 -0.5898 1.5862 40 1 6.5754 2.3826 4.9056 41 1 3.5669 0.6247 1.7379 42 1 3.9920 -0.5538 0.4855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260360107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:26 Heat of formation + Delta-G solvation = 22.828376 kcal Electronic energy + Delta-G solvation = -18926.706195 eV Core-core repulsion = 16328.307944 eV Total energy + Delta-G solvation = -2598.398251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.30879 -36.02688 -34.54587 -31.76773 -30.96783 -29.42500 -27.17137 -25.91547 -25.41778 -23.94970 -22.21063 -20.99955 -19.15854 -18.40628 -16.80548 -16.03659 -15.32414 -14.74762 -14.52372 -14.29333 -13.59862 -13.20253 -13.15852 -12.70357 -12.44350 -12.19065 -12.14456 -11.89919 -11.74606 -11.39438 -11.02420 -11.00697 -10.78835 -10.72880 -10.60373 -10.49267 -10.30555 -10.21933 -10.07785 -9.76587 -9.65575 -9.54029 -8.45596 -7.66437 -6.66338 -5.65110 -3.10138 3.43553 3.49705 3.51180 4.19592 4.58466 5.03048 5.06261 5.24017 5.26279 5.39803 5.49855 5.55353 5.59962 5.68250 5.77790 5.85216 5.90208 5.98903 6.05581 6.07412 6.10898 6.17161 6.26124 6.35427 6.41947 6.49536 6.54521 6.57506 6.67308 6.69592 6.86142 7.01641 7.15187 7.42628 7.64176 7.70474 7.77870 7.89054 8.49441 9.32192 9.96083 10.45921 11.40338 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.007483 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.292362 B = 3740.703137 C = 4191.362997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 C -0.149 4.149 4 N -0.542 5.542 5 C 0.057 3.943 6 C -0.147 4.147 7 C -0.108 4.108 8 C -0.137 4.137 9 C 0.180 3.820 10 H 0.071 0.929 11 N -0.592 5.592 12 C 0.163 3.837 13 C -0.249 4.249 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.907 5.907 17 Si 0.903 3.097 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.056 3.944 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.041 0.959 39 H -0.003 1.003 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -6.052 -9.775 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.207 4.207 4 N -0.268 5.268 5 C -0.071 4.071 6 C -0.186 4.186 7 C -0.146 4.146 8 C -0.177 4.177 9 C 0.071 3.929 10 H 0.089 0.911 11 N -0.314 5.314 12 C 0.018 3.982 13 C -0.379 4.379 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.552 5.552 17 Si 0.733 3.267 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.073 4.073 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.953 -5.693 -9.313 13.505 hybrid contribution 0.679 -0.192 0.215 0.737 sum -7.274 -5.886 -9.099 13.051 Atomic orbital electron populations 1.21873 0.95023 1.01064 1.01985 1.21508 0.95076 0.94856 0.91291 1.21944 1.01669 0.95395 1.01666 1.61962 1.18280 1.09576 1.36950 1.21920 0.97334 0.87269 1.00560 1.21917 0.98233 0.99639 0.98819 1.20491 0.97274 0.98215 0.98590 1.21122 0.98519 0.97708 1.00339 1.20056 0.90691 0.89854 0.92251 0.91086 1.43929 1.20333 1.62979 1.04135 1.20717 0.89965 0.95216 0.92281 1.19218 1.29399 1.06958 0.82316 0.91503 1.25002 1.01794 0.95166 0.97703 1.70070 1.42334 1.09000 1.33841 0.86276 0.77965 0.76685 0.85763 1.21650 1.21852 1.20509 1.22638 0.84670 1.02412 0.97547 0.91718 0.92859 0.93100 0.95096 0.91661 0.92164 0.93003 0.91845 0.90934 0.92177 0.92232 0.93258 0.92247 0.93490 0.91923 0.95631 0.93981 0.98488 0.93891 0.89835 0.96634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.03 37.16 0.34 -1.37 16 2 C 0.08 1.16 2.64 -67.71 -0.18 0.98 16 3 C -0.15 -2.17 8.45 37.16 0.31 -1.86 16 4 N -0.54 -8.99 4.57 -227.91 -1.04 -10.03 16 5 C 0.06 0.82 5.01 -4.49 -0.02 0.79 16 6 C -0.15 -1.98 5.55 -27.32 -0.15 -2.14 16 7 C -0.11 -1.58 5.30 -29.42 -0.16 -1.73 16 8 C -0.14 -2.46 4.21 -29.41 -0.12 -2.59 16 9 C 0.18 3.78 2.29 -68.52 -0.16 3.62 16 10 H 0.07 1.57 6.82 -51.93 -0.35 1.22 16 11 N -0.59 -15.01 2.69 -174.16 -0.47 -15.48 16 12 C 0.16 4.07 8.29 59.85 0.50 4.57 16 13 C -0.25 -6.96 9.57 -15.06 -0.14 -7.11 16 14 H 0.07 1.84 7.84 -52.48 -0.41 1.43 16 15 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 16 N -0.91 -26.78 10.82 55.49 0.60 -26.18 16 17 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.06 1.08 2.94 -4.50 -0.01 1.06 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.56 6.49 -51.92 -0.34 0.23 16 25 H 0.03 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.96 6.48 -51.93 -0.34 0.62 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.80 5.91 -51.93 -0.31 0.49 16 30 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16 31 H 0.06 0.87 6.61 -51.93 -0.34 0.53 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.86 7.51 -51.93 -0.39 0.47 16 35 H 0.05 0.85 6.83 -51.93 -0.35 0.49 16 36 H 0.06 1.21 8.13 -51.93 -0.42 0.78 16 37 H 0.03 0.69 7.47 -51.93 -0.39 0.30 16 38 H 0.04 1.13 7.25 -51.93 -0.38 0.75 16 39 H 0.00 -0.08 6.85 -51.93 -0.36 -0.43 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.89 6.69 -51.93 -0.35 1.55 16 42 H 0.02 0.29 6.38 -51.93 -0.33 -0.04 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.00 305.98 -8.68 -37.68 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.47 Total: -2.02 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.91 Total: -51.69 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.00 -8.68 -37.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.507 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds