Wall clock time and date at job start Mon Mar 30 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 N 1.46903 * 109.47162 * 120.00054 * 2 1 3 5 5 C 1.48001 * 110.99919 * 66.13148 * 4 2 1 6 6 C 1.50445 * 112.81754 * 84.83848 * 5 4 2 7 7 C 1.54304 * 108.49230 * 93.73540 * 6 5 4 8 8 C 1.45880 * 112.19438 * 281.44885 * 7 6 5 9 9 C 1.54319 * 112.18148 * 61.11359 * 8 7 6 10 10 H 1.08997 * 109.62427 * 41.18867 * 9 8 7 11 11 N 1.46503 * 109.63086 * 161.77870 * 9 8 7 12 12 C 1.46500 * 119.99638 * 60.00707 * 11 9 8 13 13 C 1.36930 * 119.99769 * 239.99923 * 11 9 8 14 14 H 1.08003 * 120.00221 * 23.60931 * 13 11 9 15 15 C 1.38812 * 119.99848 * 203.59730 * 13 11 9 16 16 N 1.31618 * 119.99881 * 14.04730 * 15 13 11 17 17 Si 1.86806 * 120.00144 * 194.04124 * 15 13 11 18 18 H 1.48498 * 109.47044 * 90.00198 * 17 15 13 19 19 H 1.48502 * 109.47070 * 210.00522 * 17 15 13 20 20 H 1.48504 * 109.46739 * 330.00171 * 17 15 13 21 21 C 1.48000 * 110.99951 * 194.85311 * 4 2 1 22 22 H 1.08999 * 109.47304 * 293.14361 * 1 2 3 23 23 H 1.08995 * 109.47540 * 53.14845 * 1 2 3 24 24 H 1.09009 * 109.47133 * 173.15011 * 1 2 3 25 25 H 1.08999 * 109.46744 * 239.99749 * 2 1 3 26 26 H 1.08996 * 109.46672 * 60.00182 * 3 2 1 27 27 H 1.08997 * 109.46957 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46739 * 300.00373 * 3 2 1 29 29 H 1.09003 * 108.81232 * 323.97847 * 5 4 2 30 30 H 1.09004 * 108.72346 * 205.63824 * 5 4 2 31 31 H 1.08997 * 109.63483 * 334.02966 * 6 5 4 32 32 H 1.09009 * 109.63099 * 213.42917 * 6 5 4 33 33 H 1.09001 * 108.93948 * 160.75192 * 7 6 5 34 34 H 1.08996 * 108.86803 * 42.09878 * 7 6 5 35 35 H 1.09002 * 108.93835 * 300.42238 * 8 7 6 36 36 H 1.08994 * 108.94348 * 181.81482 * 8 7 6 37 37 H 1.09000 * 109.47314 * 92.72899 * 12 11 9 38 38 H 1.08997 * 109.46580 * 212.72770 * 12 11 9 39 39 H 1.08997 * 109.47392 * 332.72544 * 12 11 9 40 40 H 0.97003 * 119.99887 * 179.97438 * 16 15 13 41 41 H 1.09001 * 108.81118 * 70.47642 * 21 4 2 42 42 H 1.09007 * 108.80807 * 312.20686 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6694 -2.1300 1.1621 6 6 2.6661 -2.9536 0.3930 7 6 3.7040 -3.5182 1.3855 8 6 4.7003 -2.5231 1.7665 9 6 4.0671 -1.3045 2.4705 10 1 3.2943 -1.6416 3.1614 11 7 5.0999 -0.5674 3.2026 12 6 6.2448 -0.0023 2.4841 13 6 4.9951 -0.4065 4.5584 14 1 4.4083 -1.1013 5.1409 15 6 5.6433 0.6495 5.1841 16 7 6.1227 1.6445 4.4683 17 14 5.8351 0.6585 7.0423 18 1 7.1057 -0.0151 7.4121 19 1 5.8577 2.0607 7.5308 20 1 4.6940 -0.0628 7.6611 21 6 3.4556 -0.4132 1.4240 22 1 -0.3634 0.4039 0.9449 23 1 -0.3634 0.6163 -0.8223 24 1 -0.3634 -1.0204 -0.1226 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9562 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 0.6892 -2.2410 0.6983 30 1 1.6183 -2.5044 2.1846 31 1 3.1677 -2.3270 -0.3445 32 1 2.1537 -3.7751 -0.1077 33 1 4.2098 -4.3664 0.9241 34 1 3.1855 -3.8605 2.2811 35 1 5.2212 -2.1832 0.8713 36 1 5.4222 -2.9850 2.4399 37 1 6.0256 1.0281 2.2043 38 1 7.1244 -0.0248 3.1274 39 1 6.4362 -0.5898 1.5862 40 1 6.5754 2.3826 4.9056 41 1 3.5669 0.6247 1.7379 42 1 3.9920 -0.5538 0.4855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260360107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:26 Heat of formation + Delta-G solvation = 5.322644 kcal Electronic energy + Delta-G solvation = -18927.465301 eV Core-core repulsion = 16328.307944 eV Total energy + Delta-G solvation = -2599.157356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.69035 -37.62234 -36.06371 -33.62007 -32.20215 -31.16260 -28.35286 -27.99030 -26.89549 -25.36063 -23.97704 -22.23775 -20.62488 -19.81201 -18.81273 -17.52195 -16.80863 -16.44027 -15.85261 -15.67956 -15.40639 -14.70871 -14.53894 -14.36341 -13.94793 -13.67972 -13.45378 -13.01551 -12.95405 -12.90720 -12.87937 -12.72068 -12.47118 -12.21455 -12.09046 -12.05751 -11.90834 -11.72297 -11.60541 -11.52531 -11.21381 -11.00312 -10.58572 -8.96650 -8.74829 -7.81232 -5.29010 1.46269 1.47157 1.56244 2.50554 2.93702 3.32179 3.71605 3.79638 3.93076 4.06492 4.13385 4.26753 4.32171 4.44612 4.49940 4.56956 4.67297 4.76050 4.78974 4.83317 4.86488 4.94435 4.97984 5.00467 5.10215 5.19252 5.22755 5.26500 5.29833 5.33043 5.38161 5.49309 5.52632 5.53716 5.67242 5.70957 6.31114 6.36898 6.43179 7.17359 7.90250 8.34730 9.22401 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.007483 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.292362 B = 3740.703137 C = 4191.362997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 C -0.147 4.147 4 N -0.557 5.557 5 C 0.055 3.945 6 C -0.138 4.138 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.177 3.823 10 H 0.057 0.943 11 N -0.608 5.608 12 C 0.182 3.818 13 C -0.260 4.260 14 H 0.066 0.934 15 C -0.052 4.052 16 N -0.938 5.938 17 Si 0.967 3.033 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.078 3.922 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.046 0.954 37 H -0.001 1.001 38 H 0.015 0.985 39 H 0.025 0.975 40 H 0.247 0.753 41 H 0.041 0.959 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -7.797 -10.893 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 C -0.204 4.204 4 N -0.284 5.284 5 C -0.072 4.072 6 C -0.177 4.177 7 C -0.145 4.145 8 C -0.162 4.162 9 C 0.070 3.930 10 H 0.075 0.925 11 N -0.330 5.330 12 C 0.037 3.963 13 C -0.391 4.391 14 H 0.084 0.916 15 C -0.247 4.247 16 N -0.584 5.584 17 Si 0.796 3.204 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.194 1.194 21 C -0.051 4.051 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.017 0.983 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.478 -7.473 -10.451 15.966 hybrid contribution 1.092 0.335 0.519 1.255 sum -8.386 -7.138 -9.931 14.829 Atomic orbital electron populations 1.21820 0.92815 1.02394 1.02173 1.21631 0.96694 0.94027 0.90530 1.21922 1.00176 0.96262 1.02046 1.61874 1.15978 1.11667 1.38852 1.22007 0.98944 0.85730 1.00525 1.21857 0.97555 1.00249 0.98066 1.20470 0.96944 0.97778 0.99332 1.20953 0.98994 0.96853 0.99393 1.20214 0.89694 0.90787 0.92317 0.92521 1.44146 1.21601 1.63340 1.03941 1.20402 0.88987 0.94323 0.92566 1.19519 1.28974 1.06737 0.83821 0.91579 1.25768 1.02021 0.94966 1.01979 1.70235 1.43312 1.09533 1.35357 0.85261 0.78118 0.76365 0.80687 1.21232 1.22165 1.19415 1.22122 0.86866 0.99363 0.96707 0.93002 0.90787 0.91606 0.94073 0.93557 0.94453 0.90281 0.89325 0.92035 0.92989 0.89041 0.90949 0.92102 0.93480 0.93483 0.98296 0.96591 0.95656 0.94369 0.94060 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.03 71.98 0.65 -2.20 16 2 C 0.08 2.12 2.64 44.92 0.12 2.24 16 3 C -0.15 -4.22 8.45 71.98 0.61 -3.61 16 4 N -0.56 -17.97 4.57 -874.96 -4.00 -21.98 16 5 C 0.05 1.44 5.01 85.26 0.43 1.86 16 6 C -0.14 -3.25 5.55 30.21 0.17 -3.09 16 7 C -0.11 -2.86 5.30 28.85 0.15 -2.70 16 8 C -0.12 -4.27 4.21 28.86 0.12 -4.15 16 9 C 0.18 7.50 2.29 44.61 0.10 7.60 16 10 H 0.06 2.54 6.82 -2.39 -0.02 2.52 16 11 N -0.61 -31.67 2.69 -704.93 -1.90 -33.56 16 12 C 0.18 9.41 8.29 127.77 1.06 10.47 16 13 C -0.26 -14.88 9.57 84.03 0.80 -14.07 16 14 H 0.07 3.71 7.84 -2.91 -0.02 3.68 16 15 C -0.05 -3.03 5.06 84.86 0.43 -2.60 16 16 N -0.94 -57.20 10.82 21.65 0.23 -56.97 16 17 Si 0.97 46.51 29.58 68.60 2.03 48.54 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.08 3.07 2.94 85.26 0.25 3.32 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.20 6.49 -2.38 -0.02 1.18 16 25 H 0.04 1.04 7.65 -2.39 -0.02 1.03 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.22 6.48 -2.39 -0.02 1.20 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.89 5.91 -2.39 -0.01 1.87 16 30 H 0.06 1.76 6.58 -2.38 -0.02 1.74 16 31 H 0.05 1.34 6.61 -2.39 -0.02 1.32 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.63 7.51 -2.39 -0.02 1.61 16 35 H 0.05 1.63 6.83 -2.39 -0.02 1.61 16 36 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 37 H 0.00 -0.07 7.47 -2.39 -0.02 -0.09 16 38 H 0.02 0.86 7.25 -2.39 -0.02 0.85 16 39 H 0.03 1.13 6.85 -2.39 -0.02 1.11 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 41 H 0.04 1.96 6.69 -2.39 -0.02 1.94 16 42 H 0.02 0.68 6.38 -2.38 -0.02 0.66 16 Total: -1.00 -64.23 305.98 2.22 -62.01 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.96 Total: 8.88 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.89 Total: -6.93 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -5.67 Total: -112.50 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -64.23 2.22 -62.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260360107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.331 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds