Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 N 1.46904 * 109.46773 * 119.99900 * 2 1 3 5 5 C 1.46904 * 111.00014 * 100.84192 * 4 2 1 6 6 C 1.50696 * 108.74000 * 62.89162 * 5 4 2 7 7 H 1.07997 * 119.99882 * 233.00674 * 6 5 4 8 8 C 1.37878 * 120.00026 * 53.00674 * 6 5 4 9 9 N 1.31520 * 119.99976 * 8.28810 * 8 6 5 10 10 Si 1.86801 * 120.00254 * 188.29360 * 8 6 5 11 11 H 1.48500 * 109.47021 * 59.99874 * 10 8 6 12 12 H 1.48494 * 109.47026 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46836 * 300.00232 * 10 8 6 14 14 C 1.50459 * 108.77093 * 181.20183 * 5 4 2 15 15 C 1.54513 * 108.84961 * 212.95257 * 14 5 4 16 16 C 1.45865 * 111.59017 * 282.80298 * 15 14 5 17 17 N 1.47797 * 112.91644 * 61.32342 * 16 15 14 18 18 C 1.46910 * 110.99618 * 153.86618 * 17 16 15 19 19 C 1.44265 * 109.46875 * 276.74108 * 17 16 15 20 20 C 1.54071 * 111.97963 * 96.44049 * 19 17 16 21 21 H 1.09000 * 109.46883 * 60.53243 * 1 2 3 22 22 H 1.08997 * 109.47374 * 180.53559 * 1 2 3 23 23 H 1.08998 * 109.47385 * 300.53353 * 1 2 3 24 24 H 1.08996 * 109.47415 * 239.99653 * 2 1 3 25 25 H 1.08998 * 109.47509 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46965 * 299.99736 * 3 2 1 27 27 H 1.09002 * 109.47256 * 59.99906 * 3 2 1 28 28 H 1.00905 * 110.99991 * 224.78791 * 4 2 1 29 29 H 0.96994 * 120.00222 * 179.97438 * 9 8 6 30 30 H 1.08994 * 109.58115 * 93.13697 * 14 5 4 31 31 H 1.09004 * 109.67818 * 332.81829 * 14 5 4 32 32 H 1.09004 * 109.05442 * 162.26147 * 15 14 5 33 33 H 1.08991 * 109.00273 * 43.31042 * 15 14 5 34 34 H 1.09006 * 108.78710 * 300.44226 * 16 15 14 35 35 H 1.09000 * 108.79109 * 182.21725 * 16 15 14 36 36 H 1.08996 * 109.46797 * 56.05374 * 18 17 16 37 37 H 1.08999 * 109.47081 * 296.05248 * 18 17 16 38 38 H 1.09001 * 109.46853 * 176.04761 * 18 17 16 39 39 H 1.08997 * 108.98043 * 217.07869 * 19 17 16 40 40 H 1.08999 * 108.97996 * 335.79161 * 19 17 16 41 41 H 1.09005 * 108.91712 * 198.19260 * 20 19 17 42 42 H 1.08992 * 108.92365 * 79.63617 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.4383 -2.0642 0.8814 6 6 3.5916 -2.0062 -0.0868 7 1 3.5482 -2.5614 -1.0121 8 6 4.7021 -1.2443 0.2086 9 7 4.8287 -0.7006 1.3995 10 14 6.0267 -0.9840 -1.0825 11 1 5.4367 -0.3133 -2.2688 12 1 7.1063 -0.1338 -0.5197 13 1 6.5898 -2.2977 -1.4857 14 6 2.9012 -2.7347 2.1463 15 6 4.0364 -3.7242 1.8002 16 6 3.5164 -4.9516 1.2078 17 7 2.7950 -4.7176 -0.0607 18 6 2.8315 -5.9122 -0.9151 19 6 1.4357 -4.3271 0.2241 20 6 1.2598 -2.7966 0.2065 21 1 -0.3633 0.5055 -0.8947 22 1 -0.3634 -1.0276 0.0096 23 1 -0.3634 0.5221 0.8851 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 2.7705 -0.1768 1.6336 29 1 5.6101 -0.1649 1.6075 30 1 2.0700 -3.2760 2.5981 31 1 3.2713 -1.9845 2.8452 32 1 4.5824 -3.9719 2.7105 33 1 4.7180 -3.2495 1.0946 34 1 2.8360 -5.4228 1.9171 35 1 4.3483 -5.6300 1.0188 36 1 2.4247 -6.7627 -0.3680 37 1 3.8619 -6.1232 -1.2008 38 1 2.2347 -5.7370 -1.8102 39 1 0.7761 -4.7683 -0.5230 40 1 1.1572 -4.7047 1.2079 41 1 0.3384 -2.5407 0.7298 42 1 1.1814 -2.4617 -0.8278 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = 18.693828 kcal Electronic energy + Delta-G solvation = -19742.728931 eV Core-core repulsion = 17144.151393 eV Total energy + Delta-G solvation = -2598.577538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.84263 -36.20050 -33.49398 -31.34630 -31.24450 -28.58220 -26.36376 -25.98235 -25.10801 -23.66970 -22.36352 -19.76611 -18.96871 -18.11680 -15.81443 -15.22735 -14.96326 -14.33030 -14.17730 -13.95283 -13.29204 -13.04790 -12.77486 -12.47743 -12.28722 -11.99153 -11.58468 -11.41883 -11.39117 -11.25644 -10.89850 -10.80147 -10.54091 -10.36153 -10.30225 -10.10725 -9.81402 -9.63427 -9.53230 -9.07681 -8.90793 -8.71763 -8.13051 -7.36213 -6.74024 -5.78803 -3.81983 3.36822 3.42154 3.46761 4.53318 4.70439 5.32760 5.63766 5.67732 5.78976 5.81019 5.97517 6.01943 6.16123 6.17256 6.20659 6.29577 6.38819 6.40542 6.51820 6.62428 6.64179 6.69691 6.73982 6.86142 6.86863 6.99301 7.10821 7.15471 7.23513 7.37619 7.40773 7.74885 7.87971 7.99637 8.02022 8.07693 8.19441 8.53896 8.90463 9.24786 9.40766 9.75816 11.16070 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.013695 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.860284 B = 2044.053741 C = 2834.021013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 C -0.149 4.149 4 N -0.689 5.689 5 C 0.236 3.764 6 C -0.481 4.481 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.876 3.124 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.280 1.280 14 C -0.068 4.068 15 C -0.117 4.117 16 C 0.079 3.921 17 N -0.507 5.507 18 C 0.028 3.972 19 C 0.066 3.934 20 C -0.091 4.091 21 H 0.032 0.968 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.361 0.639 29 H 0.258 0.742 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.114 0.886 34 H 0.011 0.989 35 H 0.045 0.955 36 H 0.010 0.990 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -4.105 -1.416 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.207 4.207 4 N -0.326 5.326 5 C 0.146 3.854 6 C -0.521 4.521 7 H 0.082 0.918 8 C -0.142 4.142 9 N -0.541 5.541 10 Si 0.706 3.294 11 H -0.208 1.208 12 H -0.219 1.219 13 H -0.206 1.206 14 C -0.107 4.107 15 C -0.155 4.155 16 C -0.048 4.048 17 N -0.230 5.230 18 C -0.120 4.120 19 C -0.063 4.063 20 C -0.129 4.129 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.185 0.815 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.132 0.868 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.817 -3.776 -1.350 6.268 hybrid contribution 1.307 -0.354 -0.798 1.572 sum -3.510 -4.130 -2.148 5.830 Atomic orbital electron populations 1.22007 0.97686 1.00910 0.99121 1.21191 0.92859 0.92707 0.95776 1.22008 1.01372 0.97711 0.99640 1.61172 1.42420 1.04894 1.24109 1.18238 0.89897 0.85524 0.91735 1.21795 1.00564 1.24909 1.04862 0.91762 1.24869 0.97622 0.96993 0.94734 1.69734 1.29507 1.35889 1.18924 0.86900 0.81963 0.77955 0.82611 1.20819 1.21892 1.20606 1.20995 0.94423 0.96901 0.98374 1.20689 1.00515 0.95057 0.99191 1.20947 0.96359 0.98426 0.89105 1.61629 1.13898 1.31335 1.16171 1.22445 1.01424 0.91190 0.96979 1.21860 0.88731 0.97893 0.97822 1.22106 0.98452 0.92469 0.99912 0.94858 0.92865 0.93784 0.92327 0.92613 0.94344 0.93691 0.81451 0.93201 0.97097 0.91630 0.95493 0.86766 0.97067 0.93673 0.97175 0.92101 0.92235 0.93869 0.95573 0.93660 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.28 37.16 0.34 -2.17 16 2 C 0.09 1.79 2.42 -67.71 -0.16 1.63 16 3 C -0.15 -2.94 9.04 37.16 0.34 -2.60 16 4 N -0.69 -15.71 5.83 -94.81 -0.55 -16.26 16 5 C 0.24 5.37 0.46 -133.34 -0.06 5.31 16 6 C -0.48 -11.87 3.52 -34.44 -0.12 -11.99 16 7 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 8 C 0.06 1.43 3.74 -17.82 -0.07 1.36 16 9 N -0.90 -23.16 9.87 55.43 0.55 -22.62 16 10 Si 0.88 20.85 29.55 -169.99 -5.02 15.83 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.07 -1.57 4.39 -27.21 -0.12 -1.69 16 15 C -0.12 -2.57 5.11 -29.31 -0.15 -2.72 16 16 C 0.08 1.52 4.96 -6.71 -0.03 1.49 16 17 N -0.51 -9.78 3.08 -247.87 -0.76 -10.54 16 18 C 0.03 0.45 9.22 60.07 0.55 1.00 16 19 C 0.07 1.24 5.17 -4.67 -0.02 1.22 16 20 C -0.09 -1.87 3.39 -25.49 -0.09 -1.96 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.96 5.50 -51.93 -0.29 0.67 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.36 5.82 -51.93 -0.30 1.06 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.36 8.94 5.56 -39.29 -0.22 8.72 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.01 0.23 7.15 -51.93 -0.37 -0.14 16 31 H 0.07 1.64 7.05 -51.93 -0.37 1.27 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 2.85 4.59 -51.93 -0.24 2.61 16 34 H 0.01 0.21 7.24 -51.93 -0.38 -0.17 16 35 H 0.04 0.81 7.79 -51.93 -0.40 0.41 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.04 0.72 7.43 -51.93 -0.39 0.34 16 40 H 0.03 0.49 6.51 -51.93 -0.34 0.15 16 41 H 0.04 0.91 6.58 -51.93 -0.34 0.57 16 42 H 0.05 1.03 6.92 -51.93 -0.36 0.67 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -24.95 296.95 -8.20 -33.14 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.29 Total: 7.10 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 0.41 Total: -11.12 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.77 Total: -49.42 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -24.95 -8.20 -33.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.835 kcal (2) G-P(sol) polarization free energy of solvation -24.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds