Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 N 1.46905 * 109.47008 * 120.00022 * 2 1 3 5 5 C 1.46898 * 110.99946 * 150.99281 * 4 2 1 6 6 C 1.50701 * 108.73937 * 59.08835 * 5 4 2 7 7 H 1.07998 * 120.00285 * 243.94660 * 6 5 4 8 8 C 1.37879 * 119.99435 * 63.95074 * 6 5 4 9 9 N 1.31512 * 119.99552 * 190.31792 * 8 6 5 10 10 Si 1.86798 * 120.00251 * 10.32380 * 8 6 5 11 11 H 1.48502 * 109.47107 * 84.34295 * 10 8 6 12 12 H 1.48500 * 109.46837 * 204.34713 * 10 8 6 13 13 H 1.48495 * 109.46804 * 324.34287 * 10 8 6 14 14 C 1.50520 * 108.71279 * 300.78465 * 5 4 2 15 15 C 1.54509 * 108.82373 * 331.40748 * 14 5 4 16 16 C 1.45867 * 111.53644 * 282.70615 * 15 14 5 17 17 N 1.47799 * 112.91467 * 61.36123 * 16 15 14 18 18 C 1.46903 * 110.99944 * 153.86395 * 17 16 15 19 19 C 1.44271 * 109.46701 * 276.73677 * 17 16 15 20 20 C 1.54071 * 111.97560 * 96.44321 * 19 17 16 21 21 H 1.09001 * 109.46762 * 299.99977 * 1 2 3 22 22 H 1.08999 * 109.47109 * 59.99633 * 1 2 3 23 23 H 1.09000 * 109.47638 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47411 * 239.99637 * 2 1 3 25 25 H 1.08997 * 109.47031 * 188.28280 * 3 2 1 26 26 H 1.08995 * 109.47151 * 308.28903 * 3 2 1 27 27 H 1.09000 * 109.47063 * 68.28601 * 3 2 1 28 28 H 1.00901 * 111.00096 * 274.94560 * 4 2 1 29 29 H 0.97002 * 120.00222 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.63839 * 211.57289 * 14 5 4 31 31 H 1.08993 * 109.53391 * 91.17794 * 14 5 4 32 32 H 1.09006 * 109.05070 * 162.20173 * 15 14 5 33 33 H 1.08999 * 109.05774 * 43.21707 * 15 14 5 34 34 H 1.08996 * 108.79693 * 182.24949 * 16 15 14 35 35 H 1.08999 * 108.79492 * 300.47670 * 16 15 14 36 36 H 1.09002 * 109.46936 * 63.95459 * 18 17 16 37 37 H 1.08996 * 109.47514 * 183.95315 * 18 17 16 38 38 H 1.08999 * 109.47236 * 303.95730 * 18 17 16 39 39 H 1.09000 * 108.98350 * 217.07975 * 19 17 16 40 40 H 1.08990 * 108.97991 * 335.80029 * 19 17 16 41 41 H 1.08990 * 108.92714 * 79.63907 * 20 19 17 42 42 H 1.09009 * 108.91743 * 198.28685 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3259 -1.3167 0.9506 6 6 4.3047 -0.2455 0.5437 7 1 4.7420 -0.2604 -0.4437 8 6 4.6419 0.7535 1.4321 9 7 5.3309 1.7950 1.0198 10 14 4.1204 0.6275 3.2214 11 1 5.1074 -0.1931 3.9681 12 1 4.0565 1.9871 3.8152 13 1 2.7825 -0.0116 3.3031 14 6 3.1839 -2.2991 -0.1810 15 6 1.7359 -2.8380 -0.1946 16 6 1.5272 -3.8386 0.8462 17 7 1.7380 -3.3048 2.2082 18 6 0.9639 -4.0663 3.1977 19 6 3.1459 -3.3305 2.5222 20 6 3.8206 -1.9710 2.2575 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1199 1.4460 -0.1480 26 1 1.5608 1.9973 -0.8066 27 1 1.8027 1.9118 0.9547 28 1 2.0636 -0.0638 1.9874 29 1 5.5679 2.4981 1.6446 30 1 3.8799 -3.1257 -0.0380 31 1 3.3965 -1.7996 -1.1261 32 1 1.5328 -3.2878 -1.1665 33 1 1.0462 -2.0093 -0.0350 34 1 0.5075 -4.2162 0.7709 35 1 2.2184 -4.6653 0.6822 36 1 1.3254 -5.0941 3.2287 37 1 1.0817 -3.6099 4.1805 38 1 -0.0895 -4.0599 2.9179 39 1 3.2699 -3.5890 3.5738 40 1 3.6313 -4.0920 1.9119 41 1 3.6064 -1.3018 3.0907 42 1 4.8986 -2.1184 2.1912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = 53.288530 kcal Electronic energy + Delta-G solvation = -19993.346311 eV Core-core repulsion = 17396.268911 eV Total energy + Delta-G solvation = -2597.077400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36858 -36.42439 -33.19366 -32.44697 -31.57002 -28.54095 -26.78250 -26.19166 -25.28196 -24.05852 -22.19535 -19.93555 -19.60258 -18.48770 -16.46013 -15.67334 -15.21991 -14.45187 -14.32155 -14.01478 -13.72578 -13.01884 -12.84735 -12.66954 -12.48567 -12.22703 -12.06963 -11.90368 -11.47616 -11.34451 -11.13720 -10.84643 -10.54089 -10.38551 -10.27470 -10.03463 -9.86269 -9.70069 -9.61786 -9.51874 -9.21492 -8.48482 -8.28094 -7.61312 -6.73394 -6.13022 -4.06522 3.25916 3.34764 3.40973 4.35796 4.49885 5.19275 5.41292 5.45714 5.58711 5.64603 5.75984 5.91447 5.96263 6.00463 6.10182 6.14689 6.20140 6.24642 6.30303 6.37823 6.50237 6.53687 6.58525 6.60819 6.71725 6.75324 6.81373 6.90052 7.01879 7.21271 7.31624 7.32778 7.46640 7.74466 7.78752 7.82558 7.86161 8.34125 8.74338 8.88660 8.93518 9.52403 10.99574 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.013193 C = 0.010652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.961374 B = 2121.858297 C = 2627.964592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 C -0.186 4.186 4 N -0.661 5.661 5 C 0.216 3.784 6 C -0.535 4.535 7 H 0.072 0.928 8 C 0.078 3.922 9 N -0.892 5.892 10 Si 0.871 3.129 11 H -0.286 1.286 12 H -0.307 1.307 13 H -0.236 1.236 14 C -0.084 4.084 15 C -0.139 4.139 16 C 0.079 3.921 17 N -0.503 5.503 18 C 0.030 3.970 19 C 0.064 3.936 20 C -0.118 4.118 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.324 0.676 29 H 0.262 0.738 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.116 0.884 34 H 0.050 0.950 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -8.517 1.266 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 C -0.244 4.244 4 N -0.296 5.296 5 C 0.126 3.874 6 C -0.574 4.574 7 H 0.090 0.910 8 C -0.124 4.124 9 N -0.530 5.530 10 Si 0.704 3.296 11 H -0.214 1.214 12 H -0.236 1.236 13 H -0.163 1.163 14 C -0.122 4.122 15 C -0.176 4.176 16 C -0.048 4.048 17 N -0.227 5.227 18 C -0.119 4.119 19 C -0.065 4.065 20 C -0.156 4.156 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.131 0.869 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.353 -8.432 1.219 11.931 hybrid contribution 0.869 0.046 1.119 1.418 sum -7.483 -8.386 2.338 11.480 Atomic orbital electron populations 1.21934 0.97465 1.00567 0.99772 1.21239 0.92249 0.93225 0.95413 1.22828 1.06596 0.96500 0.98504 1.61579 1.28812 1.34641 1.04579 1.18391 0.86763 0.91991 0.90208 1.21792 1.26112 1.08114 1.01430 0.91045 1.24971 0.94593 0.94859 0.98017 1.69934 1.39426 1.08739 1.34916 0.87567 0.80471 0.75101 0.86477 1.21360 1.23557 1.16325 1.21273 0.94516 0.97587 0.98792 1.20977 1.00625 1.00975 0.95046 1.20827 0.98836 0.95476 0.89710 1.61525 1.07667 1.52400 1.01087 1.22427 0.98288 0.94721 0.96461 1.21898 0.88269 0.97983 0.98348 1.22671 0.98475 0.95061 0.99425 0.93821 0.94156 0.92804 0.91089 0.86917 0.95701 0.95172 0.85380 0.92754 0.94074 0.92770 0.94495 0.86647 0.93193 0.96643 0.97088 0.92103 0.92021 0.93663 0.95155 0.92892 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.22 37.16 0.34 -2.02 16 2 C 0.09 1.78 1.71 -67.71 -0.12 1.66 16 3 C -0.19 -4.07 8.39 37.16 0.31 -3.75 16 4 N -0.66 -13.93 3.78 -94.78 -0.36 -14.28 16 5 C 0.22 4.74 0.30 -133.32 -0.04 4.70 16 6 C -0.54 -13.85 5.83 -34.44 -0.20 -14.05 16 7 H 0.07 2.06 7.67 -52.49 -0.40 1.66 16 8 C 0.08 2.10 3.85 -17.82 -0.07 2.04 16 9 N -0.89 -25.84 13.68 55.43 0.76 -25.08 16 10 Si 0.87 21.07 23.04 -169.99 -3.92 17.16 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 13 H -0.24 -5.41 4.26 56.52 0.24 -5.17 16 14 C -0.08 -1.66 4.14 -27.18 -0.11 -1.78 16 15 C -0.14 -2.39 4.80 -29.32 -0.14 -2.53 16 16 C 0.08 1.26 4.96 -6.71 -0.03 1.23 16 17 N -0.50 -8.61 3.81 -247.88 -0.94 -9.55 16 18 C 0.03 0.42 9.19 60.07 0.55 0.97 16 19 C 0.06 1.15 5.17 -4.67 -0.02 1.12 16 20 C -0.12 -2.52 3.66 -25.49 -0.09 -2.61 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.87 6.54 -51.93 -0.34 0.53 16 24 H 0.07 1.46 5.49 -51.93 -0.29 1.18 16 25 H 0.11 2.87 4.56 -51.93 -0.24 2.64 16 26 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.03 0.65 7.95 -51.93 -0.41 0.24 16 28 H 0.32 7.37 3.98 -39.29 -0.16 7.22 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.04 0.80 7.15 -51.93 -0.37 0.43 16 31 H 0.05 1.13 6.82 -51.93 -0.35 0.77 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.12 2.08 2.55 -51.93 -0.13 1.95 16 34 H 0.05 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.02 0.24 7.24 -51.93 -0.38 -0.13 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 39 H 0.04 0.75 7.55 -51.93 -0.39 0.36 16 40 H 0.03 0.53 6.50 -51.93 -0.34 0.19 16 41 H 0.05 1.19 2.71 -51.93 -0.14 1.05 16 42 H 0.06 1.35 7.96 -51.92 -0.41 0.93 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -27.19 281.42 -6.83 -34.02 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.99 Total: 8.52 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 0.38 Total: -15.02 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.54 Total: -48.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -3.92 Total: 17.16 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.19 -6.83 -34.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.311 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds