Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 N 1.46905 * 109.47008 * 120.00022 * 2 1 3 5 5 C 1.46898 * 110.99946 * 150.99281 * 4 2 1 6 6 C 1.50701 * 108.73937 * 59.08835 * 5 4 2 7 7 H 1.07998 * 120.00285 * 243.94660 * 6 5 4 8 8 C 1.37879 * 119.99435 * 63.95074 * 6 5 4 9 9 N 1.31512 * 119.99552 * 190.31792 * 8 6 5 10 10 Si 1.86798 * 120.00251 * 10.32380 * 8 6 5 11 11 H 1.48502 * 109.47107 * 84.34295 * 10 8 6 12 12 H 1.48500 * 109.46837 * 204.34713 * 10 8 6 13 13 H 1.48495 * 109.46804 * 324.34287 * 10 8 6 14 14 C 1.50520 * 108.71279 * 300.78465 * 5 4 2 15 15 C 1.54509 * 108.82373 * 331.40748 * 14 5 4 16 16 C 1.45867 * 111.53644 * 282.70615 * 15 14 5 17 17 N 1.47799 * 112.91467 * 61.36123 * 16 15 14 18 18 C 1.46903 * 110.99944 * 153.86395 * 17 16 15 19 19 C 1.44271 * 109.46701 * 276.73677 * 17 16 15 20 20 C 1.54071 * 111.97560 * 96.44321 * 19 17 16 21 21 H 1.09001 * 109.46762 * 299.99977 * 1 2 3 22 22 H 1.08999 * 109.47109 * 59.99633 * 1 2 3 23 23 H 1.09000 * 109.47638 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47411 * 239.99637 * 2 1 3 25 25 H 1.08997 * 109.47031 * 188.28280 * 3 2 1 26 26 H 1.08995 * 109.47151 * 308.28903 * 3 2 1 27 27 H 1.09000 * 109.47063 * 68.28601 * 3 2 1 28 28 H 1.00901 * 111.00096 * 274.94560 * 4 2 1 29 29 H 0.97002 * 120.00222 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.63839 * 211.57289 * 14 5 4 31 31 H 1.08993 * 109.53391 * 91.17794 * 14 5 4 32 32 H 1.09006 * 109.05070 * 162.20173 * 15 14 5 33 33 H 1.08999 * 109.05774 * 43.21707 * 15 14 5 34 34 H 1.08996 * 108.79693 * 182.24949 * 16 15 14 35 35 H 1.08999 * 108.79492 * 300.47670 * 16 15 14 36 36 H 1.09002 * 109.46936 * 63.95459 * 18 17 16 37 37 H 1.08996 * 109.47514 * 183.95315 * 18 17 16 38 38 H 1.08999 * 109.47236 * 303.95730 * 18 17 16 39 39 H 1.09000 * 108.98350 * 217.07975 * 19 17 16 40 40 H 1.08990 * 108.97991 * 335.80029 * 19 17 16 41 41 H 1.08990 * 108.92714 * 79.63907 * 20 19 17 42 42 H 1.09009 * 108.91743 * 198.28685 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3259 -1.3167 0.9506 6 6 4.3047 -0.2455 0.5437 7 1 4.7420 -0.2604 -0.4437 8 6 4.6419 0.7535 1.4321 9 7 5.3309 1.7950 1.0198 10 14 4.1204 0.6275 3.2214 11 1 5.1074 -0.1931 3.9681 12 1 4.0565 1.9871 3.8152 13 1 2.7825 -0.0116 3.3031 14 6 3.1839 -2.2991 -0.1810 15 6 1.7359 -2.8380 -0.1946 16 6 1.5272 -3.8386 0.8462 17 7 1.7380 -3.3048 2.2082 18 6 0.9639 -4.0663 3.1977 19 6 3.1459 -3.3305 2.5222 20 6 3.8206 -1.9710 2.2575 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1199 1.4460 -0.1480 26 1 1.5608 1.9973 -0.8066 27 1 1.8027 1.9118 0.9547 28 1 2.0636 -0.0638 1.9874 29 1 5.5679 2.4981 1.6446 30 1 3.8799 -3.1257 -0.0380 31 1 3.3965 -1.7996 -1.1261 32 1 1.5328 -3.2878 -1.1665 33 1 1.0462 -2.0093 -0.0350 34 1 0.5075 -4.2162 0.7709 35 1 2.2184 -4.6653 0.6822 36 1 1.3254 -5.0941 3.2287 37 1 1.0817 -3.6099 4.1805 38 1 -0.0895 -4.0599 2.9179 39 1 3.2699 -3.5890 3.5738 40 1 3.6313 -4.0920 1.9119 41 1 3.6064 -1.3018 3.0907 42 1 4.8986 -2.1184 2.1912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = 34.670066 kcal Electronic energy + Delta-G solvation = -19994.153668 eV Core-core repulsion = 17396.268911 eV Total energy + Delta-G solvation = -2597.884757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92595 -37.88665 -34.95123 -34.04427 -33.31653 -30.03318 -28.39941 -27.78730 -26.98832 -25.45287 -23.82658 -21.38039 -21.13800 -20.21703 -18.38066 -17.36374 -16.70930 -16.10976 -15.86688 -15.48671 -15.18285 -14.69223 -14.36816 -14.23878 -14.18690 -13.80426 -13.62189 -13.31836 -13.11020 -12.80472 -12.68098 -12.44697 -12.17684 -12.02559 -11.81022 -11.74452 -11.63336 -11.34185 -11.24314 -11.01447 -10.90163 -10.32964 -10.24227 -8.91242 -8.48140 -8.26528 -6.20673 1.29940 1.34691 1.42733 2.31129 3.11708 3.26874 3.84197 4.15443 4.21361 4.33779 4.38514 4.50843 4.59188 4.66895 4.67411 4.71543 4.73620 4.85160 4.94027 4.98151 5.00230 5.06626 5.10488 5.15678 5.18808 5.22912 5.24987 5.34300 5.45674 5.56251 5.64238 5.69866 5.84124 5.97706 6.05965 6.30585 6.49947 6.56453 6.77274 6.93919 7.07141 7.41223 8.89654 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.013193 C = 0.010652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.961374 B = 2121.858297 C = 2627.964592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.089 3.911 3 C -0.182 4.182 4 N -0.645 5.645 5 C 0.218 3.782 6 C -0.523 4.523 7 H 0.027 0.973 8 C 0.036 3.964 9 N -0.938 5.938 10 Si 0.921 3.079 11 H -0.287 1.287 12 H -0.320 1.320 13 H -0.210 1.210 14 C -0.082 4.082 15 C -0.131 4.131 16 C 0.078 3.922 17 N -0.524 5.524 18 C 0.031 3.969 19 C 0.072 3.928 20 C -0.121 4.121 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.024 0.976 28 H 0.313 0.687 29 H 0.259 0.741 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.043 0.957 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -10.652 2.101 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.021 4.021 3 C -0.240 4.240 4 N -0.279 5.279 5 C 0.127 3.873 6 C -0.563 4.563 7 H 0.045 0.955 8 C -0.162 4.162 9 N -0.578 5.578 10 Si 0.753 3.247 11 H -0.214 1.214 12 H -0.250 1.250 13 H -0.135 1.135 14 C -0.120 4.120 15 C -0.169 4.169 16 C -0.049 4.049 17 N -0.247 5.247 18 C -0.116 4.116 19 C -0.057 4.057 20 C -0.160 4.160 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.055 -10.603 2.046 15.454 hybrid contribution 1.750 0.731 0.733 2.033 sum -9.305 -9.872 2.779 13.848 Atomic orbital electron populations 1.21803 0.94221 1.01822 1.00734 1.21328 0.94673 0.91469 0.94637 1.22719 1.04123 0.98397 0.98801 1.61678 1.27522 1.34131 1.04547 1.18394 0.86016 0.91361 0.91519 1.22016 1.25925 1.09109 0.99221 0.95507 1.25520 0.94846 0.94469 1.01351 1.70078 1.41862 1.09870 1.36000 0.86775 0.81481 0.74302 0.82136 1.21411 1.24994 1.13540 1.21198 0.97067 0.96966 0.96788 1.20925 0.97735 1.01287 0.96925 1.20824 1.00442 0.94953 0.88727 1.61412 1.07038 1.53998 1.02281 1.22449 0.98570 0.95059 0.95569 1.21731 0.89045 0.95480 0.99484 1.22611 0.98039 0.97202 0.98130 0.93698 0.92402 0.91370 0.91879 0.90967 0.93962 0.95731 0.86553 0.93208 0.93973 0.94826 0.92536 0.87256 0.90734 0.96086 0.95652 0.92035 0.90598 0.92078 0.94564 0.93913 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.22 71.98 0.66 -3.25 16 2 C 0.09 3.44 1.71 44.91 0.08 3.52 16 3 C -0.18 -7.95 8.39 71.98 0.60 -7.35 16 4 N -0.65 -26.14 3.78 -453.77 -1.71 -27.86 16 5 C 0.22 9.44 0.30 2.42 0.00 9.44 16 6 C -0.52 -28.04 5.83 25.60 0.15 -27.89 16 7 H 0.03 1.64 7.67 -2.91 -0.02 1.62 16 8 C 0.04 2.03 3.85 84.66 0.33 2.35 16 9 N -0.94 -56.84 13.68 21.45 0.29 -56.55 16 10 Si 0.92 44.13 23.04 68.60 1.58 45.71 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 13 H -0.21 -9.15 4.26 99.48 0.42 -8.72 16 14 C -0.08 -3.20 4.14 30.30 0.13 -3.07 16 15 C -0.13 -4.12 4.80 28.92 0.14 -3.98 16 16 C 0.08 2.16 4.96 83.94 0.42 2.58 16 17 N -0.52 -15.84 3.81 -938.15 -3.57 -19.42 16 18 C 0.03 0.74 9.19 127.69 1.17 1.91 16 19 C 0.07 2.37 5.17 87.16 0.45 2.82 16 20 C -0.12 -5.02 3.66 31.40 0.11 -4.91 16 21 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.91 6.54 -2.39 -0.02 1.90 16 24 H 0.06 2.55 5.49 -2.39 -0.01 2.54 16 25 H 0.07 3.80 4.56 -2.39 -0.01 3.79 16 26 H 0.04 1.64 8.13 -2.39 -0.02 1.62 16 27 H 0.02 1.05 7.95 -2.39 -0.02 1.04 16 28 H 0.31 13.74 3.98 -89.69 -0.36 13.38 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.04 1.60 7.15 -2.39 -0.02 1.59 16 31 H 0.03 1.41 6.82 -2.39 -0.02 1.40 16 32 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.11 3.58 2.55 -2.39 -0.01 3.57 16 34 H 0.07 1.75 7.68 -2.39 -0.02 1.73 16 35 H 0.02 0.57 7.24 -2.39 -0.02 0.56 16 36 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 39 H 0.06 1.82 7.55 -2.39 -0.02 1.80 16 40 H 0.04 1.15 6.50 -2.39 -0.02 1.14 16 41 H 0.04 1.85 2.71 -2.39 -0.01 1.84 16 42 H 0.04 1.95 7.96 -2.38 -0.02 1.93 16 Total: -1.00 -60.37 281.42 1.19 -59.18 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.36 Total: 26.76 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.24 Total: -27.83 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.99 Total: -103.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.58 Total: 45.71 kcal Total: -60.37 1.19 -59.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.854 kcal (2) G-P(sol) polarization free energy of solvation -60.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds