Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 H 1.08996 * 109.47678 * 304.83331 * 3 2 1 5 5 C 1.50708 * 109.47167 * 184.82994 * 3 2 1 6 6 H 1.07994 * 119.99715 * 240.00267 * 5 3 2 7 7 C 1.37873 * 119.99720 * 60.00155 * 5 3 2 8 8 N 1.31518 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46992 * 270.00197 * 9 7 5 11 11 H 1.48500 * 109.47166 * 29.99964 * 9 7 5 12 12 H 1.48491 * 109.47442 * 150.00078 * 9 7 5 13 13 N 1.46899 * 109.46920 * 64.83650 * 3 2 1 14 14 C 1.46849 * 111.00463 * 43.58508 * 13 3 2 15 15 C 1.53028 * 109.52368 * 174.16395 * 14 13 3 16 16 C 1.53116 * 109.28347 * 59.17978 * 15 14 13 17 17 H 1.08999 * 109.53001 * 182.37521 * 16 15 14 18 18 C 1.53001 * 109.52303 * 62.24845 * 16 15 14 19 19 C 1.53116 * 109.15933 * 302.34753 * 16 15 14 20 20 C 1.46850 * 110.99615 * 279.37449 * 13 3 2 21 21 H 1.08997 * 109.46363 * 65.82682 * 20 13 3 22 22 C 1.52997 * 109.46475 * 305.85511 * 20 13 3 23 23 N 1.46899 * 109.47080 * 304.01957 * 22 20 13 24 24 H 1.09003 * 109.46626 * 280.11383 * 1 2 3 25 25 H 1.09007 * 109.47132 * 40.10721 * 1 2 3 26 26 H 1.08993 * 109.47303 * 160.10954 * 1 2 3 27 27 H 1.09000 * 109.47011 * 240.00390 * 2 1 3 28 28 H 1.08999 * 109.46963 * 120.00762 * 2 1 3 29 29 H 0.97003 * 119.99807 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.45698 * 294.18187 * 14 13 3 31 31 H 1.08999 * 109.45995 * 54.14726 * 14 13 3 32 32 H 1.08998 * 109.50363 * 179.12123 * 15 14 13 33 33 H 1.09008 * 109.50467 * 299.19650 * 15 14 13 34 34 H 1.09004 * 109.46959 * 60.00073 * 18 16 15 35 35 H 1.09000 * 109.47590 * 180.02562 * 18 16 15 36 36 H 1.09002 * 109.47056 * 300.00715 * 18 16 15 37 37 H 1.08999 * 109.50643 * 177.59430 * 19 16 15 38 38 H 1.09006 * 109.50559 * 297.66838 * 19 16 15 39 39 H 1.09004 * 109.47172 * 64.02077 * 22 20 13 40 40 H 1.09004 * 109.47120 * 184.01593 * 22 20 13 41 41 H 1.00905 * 110.99575 * 173.94744 * 23 22 20 42 42 H 1.00896 * 111.00349 * 297.89990 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6078 1.9807 -0.8435 5 6 3.5424 1.4441 -0.1196 6 1 4.1454 1.8894 0.6578 7 6 4.1467 0.8772 -1.2215 8 7 3.4122 0.3354 -2.1684 9 14 6.0088 0.8786 -1.3696 10 1 6.4486 2.1108 -2.0720 11 1 6.6132 0.8393 -0.0137 12 1 6.4450 -0.3131 -2.1406 13 7 1.6480 2.1004 1.2536 14 6 1.8693 1.2152 2.4042 15 6 1.5891 1.9804 3.6994 16 6 0.1423 2.4812 3.6880 17 1 -0.0492 3.0629 4.5898 18 6 -0.8121 1.2864 3.6382 19 6 -0.0751 3.3614 2.4541 20 6 0.2533 2.5562 1.1948 21 1 -0.4088 1.6925 1.1331 22 6 0.0568 3.4381 -0.0399 23 7 1.0161 4.5500 -0.0051 24 1 -0.3633 0.1805 1.0118 25 1 -0.3634 0.7860 -0.6621 26 1 -0.3633 -0.9663 -0.3496 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 3.8374 -0.0632 -2.9438 30 1 1.1997 0.3578 2.3367 31 1 2.9030 0.8695 2.4029 32 1 1.7384 1.3186 4.5526 33 1 2.2683 2.8297 3.7746 34 1 -0.6527 0.6573 4.5140 35 1 -1.8418 1.6438 3.6296 36 1 -0.6215 0.7066 2.7350 37 1 -1.1149 3.6863 2.4174 38 1 0.5768 4.2333 2.5095 39 1 0.2203 2.8451 -0.9398 40 1 -0.9587 3.8343 -0.0455 41 1 0.9741 5.0905 -0.8562 42 1 0.8627 5.1349 0.8026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300039800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = 8.289390 kcal Electronic energy + Delta-G solvation = -19502.703972 eV Core-core repulsion = 16903.675263 eV Total energy + Delta-G solvation = -2599.028709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51780 -35.21327 -34.16496 -32.02111 -30.53139 -29.60430 -27.52772 -26.25463 -24.72941 -23.31460 -22.32696 -20.24531 -19.24973 -17.71221 -16.19931 -15.68731 -15.25765 -14.59802 -14.51458 -14.07953 -13.69517 -13.54315 -13.16444 -12.85103 -12.39022 -12.10027 -11.68993 -11.51832 -11.37772 -11.15692 -11.04179 -11.00381 -10.69982 -10.66298 -10.46266 -10.20448 -10.06903 -9.93434 -9.63175 -9.42114 -9.12322 -8.68046 -8.12808 -7.86203 -6.68668 -5.84246 -3.83896 3.41193 3.46996 3.51238 4.55238 4.98238 5.17307 5.19095 5.24632 5.41923 5.46676 5.70662 5.76828 5.82871 5.93423 5.96912 6.03599 6.07732 6.14695 6.20263 6.24003 6.33636 6.44416 6.46238 6.53187 6.59452 6.63611 6.75390 6.89284 6.93989 6.96471 7.14039 7.42239 7.67625 7.82452 7.88192 8.05933 8.09916 8.46402 8.65560 8.86419 9.22903 9.79179 11.22612 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.008669 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.053157 B = 3229.298686 C = 3325.797338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.219 3.781 4 H 0.049 0.951 5 C -0.476 4.476 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.900 5.900 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.291 1.291 13 N -0.500 5.500 14 C 0.059 3.941 15 C -0.112 4.112 16 C -0.089 4.089 17 H 0.057 0.943 18 C -0.153 4.153 19 C -0.107 4.107 20 C 0.068 3.932 21 H 0.055 0.945 22 C 0.070 3.930 23 N -0.819 5.819 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.256 0.744 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.008 0.992 41 H 0.328 0.672 42 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 3.747 7.863 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C 0.113 3.887 4 H 0.067 0.933 5 C -0.515 4.515 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.217 1.217 13 N -0.224 5.224 14 C -0.069 4.069 15 C -0.150 4.150 16 C -0.107 4.107 17 H 0.076 0.924 18 C -0.210 4.210 19 C -0.145 4.145 20 C -0.042 4.042 21 H 0.072 0.928 22 C -0.061 4.061 23 N -0.348 5.348 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.535 3.499 7.801 11.396 hybrid contribution -0.384 -0.185 -0.360 0.557 sum -7.919 3.314 7.441 11.361 Atomic orbital electron populations 1.22240 0.99991 0.99561 0.99248 1.22337 0.91287 1.03226 1.02891 1.19375 0.95265 0.87607 0.86437 0.93319 1.21135 0.91245 1.34516 1.04649 0.92280 1.24892 0.97687 0.96027 0.96008 1.69876 1.34425 1.40096 1.09733 0.86597 0.86392 0.77097 0.77830 1.20968 1.20162 1.21741 1.62119 1.16773 1.39545 1.03951 1.22004 1.01043 0.93705 0.90189 1.21651 0.95445 1.00224 0.97674 1.21083 0.95810 0.96228 0.97616 0.92406 1.22004 0.98476 0.98474 1.02043 1.21643 0.99337 0.98800 0.94682 1.22001 0.92696 0.96480 0.92989 0.92789 1.21904 0.91124 0.93584 0.99497 1.58376 1.56226 1.14080 1.06075 0.93916 0.93664 0.95043 0.88569 0.94425 0.93409 0.95597 0.90822 0.93037 0.91662 0.93302 0.93509 0.91748 0.93419 0.91410 0.90335 0.97412 0.86019 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.15 37.16 0.30 -2.72 16 2 C -0.16 -3.70 4.72 -26.73 -0.13 -3.83 16 3 C 0.22 5.34 1.72 -68.86 -0.12 5.22 16 4 H 0.05 1.31 5.21 -51.93 -0.27 1.04 16 5 C -0.48 -13.13 8.09 -34.44 -0.28 -13.41 16 6 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.78 11.30 55.43 0.63 -25.15 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.50 -10.34 4.10 -220.15 -0.90 -11.24 16 14 C 0.06 1.14 3.91 -3.84 -0.01 1.13 16 15 C -0.11 -1.79 5.60 -26.66 -0.15 -1.94 16 16 C -0.09 -1.26 3.22 -90.50 -0.29 -1.55 16 17 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.15 -2.06 8.61 37.16 0.32 -1.74 16 19 C -0.11 -1.60 4.64 -26.65 -0.12 -1.72 16 20 C 0.07 1.19 1.28 -67.72 -0.09 1.10 16 21 H 0.05 0.97 2.93 -51.93 -0.15 0.82 16 22 C 0.07 1.21 5.62 -3.83 -0.02 1.19 16 23 N -0.82 -13.83 9.30 -10.37 -0.10 -13.93 16 24 H 0.04 0.77 3.55 -51.93 -0.18 0.59 16 25 H 0.04 0.88 6.42 -51.92 -0.33 0.55 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 2.57 5.96 -51.93 -0.31 2.26 16 28 H 0.04 0.88 6.15 -51.93 -0.32 0.56 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 30 H 0.03 0.50 4.01 -51.93 -0.21 0.29 16 31 H 0.07 1.59 7.52 -51.93 -0.39 1.20 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.98 3.47 -51.93 -0.18 0.80 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.05 6.77 -51.93 -0.35 0.69 16 39 H 0.08 1.56 5.36 -51.93 -0.28 1.28 16 40 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.33 4.97 9.08 -39.29 -0.36 4.62 16 42 H 0.33 4.92 7.42 -39.29 -0.29 4.63 16 LS Contribution 291.46 15.07 4.39 4.39 Total: -1.00 -28.29 291.46 -8.23 -36.53 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.55 Total: 9.38 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.68 Total: -16.89 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.37 Total: -50.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.29 -8.23 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.817 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds