Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47156 * 2 1 4 4 H 1.08996 * 109.47678 * 304.83331 * 3 2 1 5 5 C 1.50708 * 109.47167 * 184.82994 * 3 2 1 6 6 H 1.07994 * 119.99715 * 240.00267 * 5 3 2 7 7 C 1.37873 * 119.99720 * 60.00155 * 5 3 2 8 8 N 1.31518 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46992 * 270.00197 * 9 7 5 11 11 H 1.48500 * 109.47166 * 29.99964 * 9 7 5 12 12 H 1.48491 * 109.47442 * 150.00078 * 9 7 5 13 13 N 1.46899 * 109.46920 * 64.83650 * 3 2 1 14 14 C 1.46849 * 111.00463 * 43.58508 * 13 3 2 15 15 C 1.53028 * 109.52368 * 174.16395 * 14 13 3 16 16 C 1.53116 * 109.28347 * 59.17978 * 15 14 13 17 17 H 1.08999 * 109.53001 * 182.37521 * 16 15 14 18 18 C 1.53001 * 109.52303 * 62.24845 * 16 15 14 19 19 C 1.53116 * 109.15933 * 302.34753 * 16 15 14 20 20 C 1.46850 * 110.99615 * 279.37449 * 13 3 2 21 21 H 1.08997 * 109.46363 * 65.82682 * 20 13 3 22 22 C 1.52997 * 109.46475 * 305.85511 * 20 13 3 23 23 N 1.46899 * 109.47080 * 304.01957 * 22 20 13 24 24 H 1.09003 * 109.46626 * 280.11383 * 1 2 3 25 25 H 1.09007 * 109.47132 * 40.10721 * 1 2 3 26 26 H 1.08993 * 109.47303 * 160.10954 * 1 2 3 27 27 H 1.09000 * 109.47011 * 240.00390 * 2 1 3 28 28 H 1.08999 * 109.46963 * 120.00762 * 2 1 3 29 29 H 0.97003 * 119.99807 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.45698 * 294.18187 * 14 13 3 31 31 H 1.08999 * 109.45995 * 54.14726 * 14 13 3 32 32 H 1.08998 * 109.50363 * 179.12123 * 15 14 13 33 33 H 1.09008 * 109.50467 * 299.19650 * 15 14 13 34 34 H 1.09004 * 109.46959 * 60.00073 * 18 16 15 35 35 H 1.09000 * 109.47590 * 180.02562 * 18 16 15 36 36 H 1.09002 * 109.47056 * 300.00715 * 18 16 15 37 37 H 1.08999 * 109.50643 * 177.59430 * 19 16 15 38 38 H 1.09006 * 109.50559 * 297.66838 * 19 16 15 39 39 H 1.09004 * 109.47172 * 64.02077 * 22 20 13 40 40 H 1.09004 * 109.47120 * 184.01593 * 22 20 13 41 41 H 1.00905 * 110.99575 * 173.94744 * 23 22 20 42 42 H 1.00896 * 111.00349 * 297.89990 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6078 1.9807 -0.8435 5 6 3.5424 1.4441 -0.1196 6 1 4.1454 1.8894 0.6578 7 6 4.1467 0.8772 -1.2215 8 7 3.4122 0.3354 -2.1684 9 14 6.0088 0.8786 -1.3696 10 1 6.4486 2.1108 -2.0720 11 1 6.6132 0.8393 -0.0137 12 1 6.4450 -0.3131 -2.1406 13 7 1.6480 2.1004 1.2536 14 6 1.8693 1.2152 2.4042 15 6 1.5891 1.9804 3.6994 16 6 0.1423 2.4812 3.6880 17 1 -0.0492 3.0629 4.5898 18 6 -0.8121 1.2864 3.6382 19 6 -0.0751 3.3614 2.4541 20 6 0.2533 2.5562 1.1948 21 1 -0.4088 1.6925 1.1331 22 6 0.0568 3.4381 -0.0399 23 7 1.0161 4.5500 -0.0051 24 1 -0.3633 0.1805 1.0118 25 1 -0.3634 0.7860 -0.6621 26 1 -0.3633 -0.9663 -0.3496 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 3.8374 -0.0632 -2.9438 30 1 1.1997 0.3578 2.3367 31 1 2.9030 0.8695 2.4029 32 1 1.7384 1.3186 4.5526 33 1 2.2683 2.8297 3.7746 34 1 -0.6527 0.6573 4.5140 35 1 -1.8418 1.6438 3.6296 36 1 -0.6215 0.7066 2.7350 37 1 -1.1149 3.6863 2.4174 38 1 0.5768 4.2333 2.5095 39 1 0.2203 2.8451 -0.9398 40 1 -0.9587 3.8343 -0.0455 41 1 0.9741 5.0905 -0.8562 42 1 0.8627 5.1349 0.8026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300039800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -11.274363 kcal Electronic energy + Delta-G solvation = -19503.552320 eV Core-core repulsion = 16903.675263 eV Total energy + Delta-G solvation = -2599.877057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98984 -36.77380 -35.58499 -34.00123 -32.14346 -30.98180 -29.20406 -27.68444 -26.16899 -25.07664 -23.91811 -21.71477 -20.92083 -19.07855 -18.21229 -17.19334 -16.80141 -16.36489 -15.86921 -15.77481 -15.06811 -14.88071 -14.62120 -14.38154 -14.01478 -13.52290 -13.21266 -13.16354 -12.97548 -12.73256 -12.64439 -12.55761 -12.40774 -12.30623 -12.03853 -11.82865 -11.73559 -11.37481 -11.19186 -11.04225 -10.68901 -10.61607 -10.19702 -9.16872 -8.33604 -7.97847 -6.04262 1.42397 1.43555 1.53082 2.49699 3.29420 3.50624 3.96823 3.99147 4.00224 4.15514 4.31901 4.46594 4.51811 4.53118 4.61334 4.68093 4.70172 4.79521 4.83835 4.90431 4.94150 5.10083 5.10409 5.16461 5.24056 5.26732 5.37452 5.40278 5.44131 5.46424 5.62863 5.68218 5.75460 5.93532 6.00165 6.45989 6.54651 6.82669 6.89753 7.10046 7.12823 7.63467 9.06389 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.008669 C = 0.008417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.053157 B = 3229.298686 C = 3325.797338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.150 4.150 3 C 0.229 3.771 4 H 0.023 0.977 5 C -0.491 4.491 6 H 0.042 0.958 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.287 1.287 13 N -0.508 5.508 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.085 4.085 17 H 0.083 0.917 18 C -0.150 4.150 19 C -0.101 4.101 20 C 0.065 3.935 21 H 0.055 0.945 22 C 0.073 3.927 23 N -0.836 5.836 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.255 0.745 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.336 0.664 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 4.478 9.560 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.190 4.190 3 C 0.122 3.878 4 H 0.041 0.959 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.189 4.189 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.212 1.212 13 N -0.232 5.232 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.104 4.104 17 H 0.102 0.898 18 C -0.207 4.207 19 C -0.139 4.139 20 C -0.043 4.043 21 H 0.072 0.928 22 C -0.058 4.058 23 N -0.367 5.367 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.149 0.851 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.882 4.243 9.513 13.689 hybrid contribution 0.034 -0.395 -0.877 0.963 sum -8.848 3.847 8.636 12.949 Atomic orbital electron populations 1.22088 0.96908 1.00210 1.00581 1.22139 0.94038 1.02173 1.00673 1.19043 0.93305 0.87948 0.87539 0.95896 1.21411 0.93225 1.34203 1.04171 0.93976 1.25549 1.01471 0.95946 0.95896 1.70005 1.35721 1.40649 1.10003 0.85719 0.81962 0.77095 0.77741 1.20731 1.19900 1.21250 1.62008 1.19318 1.39198 1.02663 1.21960 0.99026 0.94216 0.91529 1.21598 0.96945 0.99776 0.96049 1.21096 0.94331 0.96698 0.98256 0.89832 1.21967 0.99263 0.97977 1.01494 1.21614 1.00709 0.98214 0.93353 1.22110 0.90549 0.96900 0.94781 0.92759 1.21795 0.92650 0.93406 0.97925 1.58315 1.56683 1.14547 1.07183 0.91863 0.93854 0.93879 0.92140 0.95105 0.93552 0.95587 0.94212 0.91215 0.92578 0.92163 0.91664 0.93857 0.90872 0.91821 0.93658 0.94550 0.85140 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.15 71.98 0.59 -4.90 16 2 C -0.15 -7.24 4.72 30.59 0.14 -7.09 16 3 C 0.23 11.46 1.72 44.17 0.08 11.53 16 4 H 0.02 1.29 5.21 -2.39 -0.01 1.28 16 5 C -0.49 -27.95 8.09 25.60 0.21 -27.74 16 6 H 0.04 2.48 7.78 -2.91 -0.02 2.45 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -54.32 11.30 21.45 0.24 -54.08 16 9 Si 0.95 45.91 29.54 68.60 2.03 47.94 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 N -0.51 -21.05 4.10 -850.41 -3.49 -24.53 16 14 C 0.06 2.35 3.91 86.32 0.34 2.69 16 15 C -0.11 -3.17 5.60 30.64 0.17 -3.00 16 16 C -0.09 -2.11 3.22 -10.72 -0.03 -2.15 16 17 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.15 -3.46 8.61 71.98 0.62 -2.84 16 19 C -0.10 -2.69 4.64 30.65 0.14 -2.55 16 20 C 0.07 2.20 1.28 44.94 0.06 2.25 16 21 H 0.06 1.84 2.93 -2.39 -0.01 1.84 16 22 C 0.07 2.47 5.62 86.30 0.48 2.95 16 23 N -0.84 -27.62 9.30 -186.72 -1.74 -29.36 16 24 H 0.06 2.20 3.55 -2.39 -0.01 2.19 16 25 H 0.04 1.69 6.42 -2.38 -0.02 1.67 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 3.35 5.96 -2.39 -0.01 3.34 16 28 H 0.03 1.47 6.15 -2.39 -0.01 1.46 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.03 1.00 4.01 -2.39 -0.01 0.99 16 31 H 0.04 1.76 7.52 -2.39 -0.02 1.74 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.04 1.18 3.47 -2.39 -0.01 1.17 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.77 6.77 -2.38 -0.02 1.76 16 39 H 0.05 1.83 5.36 -2.39 -0.01 1.82 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.34 10.03 9.08 -89.69 -0.81 9.21 16 42 H 0.34 9.64 7.42 -89.70 -0.67 8.98 16 Total: -1.00 -62.28 291.46 -0.16 -62.44 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.44 Total: 27.53 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 3.24 Total: -29.93 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.98 Total: -107.97 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -62.28 -0.16 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.161 kcal (2) G-P(sol) polarization free energy of solvation -62.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds