Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 H 1.09000 * 109.47265 * 305.04634 * 3 2 1 5 5 C 1.50696 * 109.47151 * 185.04230 * 3 2 1 6 6 H 1.07995 * 120.00340 * 245.28847 * 5 3 2 7 7 C 1.37882 * 119.99789 * 65.56828 * 5 3 2 8 8 N 1.31520 * 120.00101 * 359.71973 * 7 5 3 9 9 Si 1.86800 * 120.00032 * 179.72366 * 7 5 3 10 10 H 1.48497 * 109.47223 * 60.00039 * 9 7 5 11 11 H 1.48504 * 109.46780 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47084 * 299.99571 * 9 7 5 13 13 N 1.46904 * 109.46779 * 65.04508 * 3 2 1 14 14 C 1.46842 * 110.99933 * 38.33308 * 13 3 2 15 15 C 1.53046 * 109.52043 * 174.15701 * 14 13 3 16 16 C 1.53117 * 109.27374 * 59.18078 * 15 14 13 17 17 H 1.08999 * 109.52950 * 62.25160 * 16 15 14 18 18 C 1.53010 * 109.51909 * 182.43808 * 16 15 14 19 19 C 1.53122 * 109.16318 * 302.34106 * 16 15 14 20 20 C 1.46843 * 111.00024 * 274.11828 * 13 3 2 21 21 H 1.09001 * 109.46093 * 65.83685 * 20 13 3 22 22 C 1.53000 * 109.46467 * 305.85930 * 20 13 3 23 23 N 1.46898 * 109.47069 * 79.62499 * 22 20 13 24 24 H 1.09002 * 109.46939 * 164.21408 * 1 2 3 25 25 H 1.08998 * 109.47056 * 284.20852 * 1 2 3 26 26 H 1.09002 * 109.47596 * 44.21453 * 1 2 3 27 27 H 1.08999 * 109.47116 * 240.00461 * 2 1 3 28 28 H 1.08994 * 109.47399 * 119.99850 * 2 1 3 29 29 H 0.96993 * 120.00267 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.46589 * 294.17228 * 14 13 3 31 31 H 1.09003 * 109.46548 * 54.14470 * 14 13 3 32 32 H 1.08995 * 109.50685 * 299.23762 * 15 14 13 33 33 H 1.09001 * 109.53472 * 179.13476 * 15 14 13 34 34 H 1.08998 * 109.46700 * 179.67658 * 18 16 15 35 35 H 1.08995 * 109.47510 * 299.68240 * 18 16 15 36 36 H 1.08999 * 109.46690 * 59.68175 * 18 16 15 37 37 H 1.09006 * 109.50032 * 297.71728 * 19 16 15 38 38 H 1.08996 * 109.53420 * 177.62063 * 19 16 15 39 39 H 1.09002 * 109.47237 * 199.62100 * 22 20 13 40 40 H 1.09006 * 109.47088 * 319.62367 * 22 20 13 41 41 H 1.00893 * 111.00431 * 64.84302 * 23 22 20 42 42 H 1.00902 * 110.99794 * 188.79745 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9818 -0.8413 5 6 3.5417 1.4445 -0.1249 6 1 4.1508 1.8111 0.6881 7 6 4.1380 0.9835 -1.2794 8 7 3.3964 0.5370 -2.2696 9 14 5.9993 0.9930 -1.4373 10 1 6.5912 0.1508 -0.3670 11 1 6.3863 0.4503 -2.7644 12 1 6.5001 2.3848 -1.3060 13 7 1.6522 2.0989 1.2557 14 6 1.7596 1.1716 2.3892 15 6 1.4902 1.9252 3.6938 16 6 0.0881 2.5383 3.6429 17 1 -0.6541 1.7444 3.5597 18 6 -0.1642 3.3440 4.9191 19 6 -0.0126 3.4624 2.4261 20 6 0.3005 2.6644 1.1584 21 1 -0.4238 1.8571 1.0495 22 6 0.2208 3.5884 -0.0584 23 7 0.0495 2.7828 -1.2747 24 1 -0.3633 -0.9889 -0.2796 25 1 -0.3633 0.2522 0.9962 26 1 -0.3634 0.7366 -0.7166 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8158 0.2131 -3.0819 30 1 1.0285 0.3714 2.2744 31 1 2.7627 0.7458 2.4164 32 1 2.2293 2.7168 3.8162 33 1 1.5547 1.2339 4.5340 34 1 -1.1603 3.7848 4.8794 35 1 -0.0924 2.6855 5.7847 36 1 0.5804 4.1356 5.0020 37 1 0.7030 4.2783 2.5286 38 1 -1.0215 3.8695 2.3601 39 1 -0.6280 4.2633 0.0529 40 1 1.1398 4.1698 -0.1339 41 1 -0.8337 2.2951 -1.2641 42 1 0.1374 3.3538 -2.1020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300039801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = -9.447699 kcal Electronic energy + Delta-G solvation = -19318.772690 eV Core-core repulsion = 16718.974843 eV Total energy + Delta-G solvation = -2599.797847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73187 -36.80848 -35.50911 -34.00083 -32.24168 -31.25454 -29.53758 -27.43038 -25.51367 -24.59534 -23.80150 -21.40194 -20.92003 -20.21492 -18.07569 -17.16485 -16.65304 -16.11760 -15.88220 -15.73131 -15.28889 -14.89373 -14.52773 -14.12487 -13.82100 -13.63435 -13.05421 -13.00913 -12.88906 -12.76210 -12.70273 -12.51104 -12.41703 -12.27421 -11.89605 -11.80998 -11.57517 -11.41957 -11.20193 -11.02822 -10.86676 -10.59951 -10.28760 -8.83480 -8.43109 -7.88501 -5.92976 1.42849 1.43180 1.50588 2.52912 3.36751 3.55882 3.72365 4.02231 4.06353 4.16041 4.45835 4.51567 4.55356 4.62557 4.68737 4.74363 4.82024 4.85100 4.92262 4.93514 4.98459 5.07748 5.11554 5.18054 5.28941 5.33325 5.37091 5.43630 5.48471 5.62150 5.67393 5.74210 5.83541 6.03327 6.29116 6.43729 6.59255 6.74620 7.00844 7.17232 7.32087 7.71233 9.14753 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025605 B = 0.008576 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.265737 B = 3264.041783 C = 3660.172661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.175 3.825 4 H 0.126 0.874 5 C -0.506 4.506 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.910 5.910 9 Si 0.937 3.063 10 H -0.283 1.283 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.531 5.531 14 C 0.061 3.939 15 C -0.106 4.106 16 C -0.087 4.087 17 H 0.062 0.938 18 C -0.137 4.137 19 C -0.100 4.100 20 C 0.070 3.930 21 H 0.046 0.954 22 C 0.075 3.925 23 N -0.839 5.839 24 H 0.030 0.970 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.011 0.989 29 H 0.253 0.747 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.340 0.660 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 5.392 8.520 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.068 3.932 4 H 0.143 0.857 5 C -0.545 4.545 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.255 5.255 14 C -0.067 4.067 15 C -0.144 4.144 16 C -0.106 4.106 17 H 0.081 0.919 18 C -0.194 4.194 19 C -0.139 4.139 20 C -0.039 4.039 21 H 0.064 0.936 22 C -0.055 4.055 23 N -0.372 5.372 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.155 0.845 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.705 5.340 8.658 14.060 hybrid contribution 0.305 -0.593 -0.668 0.943 sum -9.400 4.748 7.991 13.220 Atomic orbital electron populations 1.22148 0.96817 1.00447 1.00687 1.21904 0.94331 1.02245 0.98451 1.20309 0.92769 0.89752 0.90356 0.85733 1.21574 0.94259 1.39175 0.99541 0.95082 1.25453 1.00607 0.96358 0.96034 1.70051 1.35189 1.44269 1.05570 0.85958 0.83003 0.77922 0.76640 1.20881 1.21099 1.20374 1.62218 1.23190 1.35456 1.04671 1.21930 0.98659 0.94126 0.91992 1.21651 0.97400 0.99421 0.95903 1.21113 0.96089 0.97740 0.95639 0.91926 1.21745 1.01843 0.99725 0.96088 1.21658 1.01284 0.97841 0.93080 1.21964 0.90914 0.96494 0.94524 0.93614 1.21737 0.99988 0.94220 0.89578 1.58855 1.39833 1.33797 1.04665 0.95063 0.93510 0.90485 0.93851 0.97063 0.93803 0.96026 0.94564 0.92615 0.91409 0.91633 0.92258 0.92886 0.92309 0.90304 0.93218 0.92651 0.84468 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.13 71.98 0.59 -5.06 16 2 C -0.13 -6.36 4.76 30.60 0.15 -6.22 16 3 C 0.18 8.73 1.53 44.17 0.07 8.79 16 4 H 0.13 6.33 4.01 -2.90 -0.01 6.32 16 5 C -0.51 -29.24 8.29 25.60 0.21 -29.02 16 6 H 0.03 1.86 7.81 -2.91 -0.02 1.83 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.91 -53.56 11.72 21.45 0.25 -53.31 16 9 Si 0.94 46.18 29.54 68.60 2.03 48.21 16 10 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 13 N -0.53 -22.46 4.31 -850.40 -3.67 -26.12 16 14 C 0.06 2.45 4.01 86.33 0.35 2.80 16 15 C -0.11 -3.28 5.38 30.65 0.16 -3.12 16 16 C -0.09 -2.23 2.79 -10.71 -0.03 -2.26 16 17 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 18 C -0.14 -2.71 9.20 71.99 0.66 -2.05 16 19 C -0.10 -2.71 4.57 30.65 0.14 -2.57 16 20 C 0.07 2.35 1.73 44.94 0.08 2.42 16 21 H 0.05 1.56 4.44 -2.39 -0.01 1.55 16 22 C 0.08 2.40 5.83 86.30 0.50 2.90 16 23 N -0.84 -27.37 5.37 -186.71 -1.00 -28.37 16 24 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.69 4.80 -2.39 -0.01 1.68 16 26 H 0.08 2.86 4.38 -2.39 -0.01 2.85 16 27 H 0.04 2.44 6.42 -2.39 -0.02 2.42 16 28 H 0.01 0.54 6.11 -2.39 -0.01 0.53 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.02 0.87 5.12 -2.39 -0.01 0.86 16 31 H 0.04 1.66 7.63 -2.39 -0.02 1.64 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.25 7.99 -2.39 -0.02 1.23 16 40 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 41 H 0.34 9.61 7.32 -89.70 -0.66 8.95 16 42 H 0.34 10.22 9.08 -89.69 -0.81 9.40 16 Total: -1.00 -63.36 298.59 0.47 -62.89 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.46 Total: 28.90 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 3.32 Total: -32.19 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.42 Total: -107.81 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -63.36 0.47 -62.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300039801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.443 kcal (2) G-P(sol) polarization free energy of solvation -63.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds