Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46870 * 2 1 4 4 H 1.08994 * 109.47046 * 55.28102 * 3 2 1 5 5 C 1.50697 * 109.46954 * 295.27829 * 3 2 1 6 6 H 1.08003 * 119.99947 * 274.51734 * 5 3 2 7 7 C 1.37874 * 119.99975 * 94.24831 * 5 3 2 8 8 N 1.31520 * 120.00234 * 5.68460 * 7 5 3 9 9 Si 1.86803 * 120.00272 * 185.68757 * 7 5 3 10 10 H 1.48499 * 109.46816 * 89.99545 * 9 7 5 11 11 H 1.48500 * 109.47053 * 209.99655 * 9 7 5 12 12 H 1.48492 * 109.46819 * 330.00050 * 9 7 5 13 13 N 1.46903 * 109.46880 * 175.27851 * 3 2 1 14 14 C 1.46900 * 111.00018 * 53.90721 * 13 3 2 15 15 C 1.46898 * 111.00074 * 289.94924 * 13 3 2 16 16 C 1.52994 * 109.47486 * 288.82289 * 15 13 3 17 17 H 1.09001 * 109.46485 * 62.18984 * 16 15 13 18 18 C 1.53036 * 109.46702 * 182.17086 * 16 15 13 19 19 C 1.53120 * 109.28093 * 179.19718 * 18 16 15 20 20 C 1.53119 * 109.15685 * 302.34536 * 19 18 16 21 21 C 1.53034 * 109.28168 * 57.65707 * 20 19 18 22 22 N 1.46851 * 109.46222 * 302.22432 * 16 15 13 23 23 H 1.09004 * 109.47212 * 63.03001 * 1 2 3 24 24 H 1.08997 * 109.47115 * 183.02675 * 1 2 3 25 25 H 1.08993 * 109.47190 * 303.02779 * 1 2 3 26 26 H 1.09000 * 109.47653 * 239.99924 * 2 1 3 27 27 H 1.08996 * 109.47226 * 120.00003 * 2 1 3 28 28 H 0.96998 * 120.00425 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47273 * 61.27181 * 14 13 3 30 30 H 1.09001 * 109.46847 * 181.27278 * 14 13 3 31 31 H 1.08999 * 109.46809 * 301.27179 * 14 13 3 32 32 H 1.08999 * 109.47116 * 48.82549 * 15 13 3 33 33 H 1.09005 * 109.47210 * 168.82028 * 15 13 3 34 34 H 1.08996 * 109.50001 * 299.13640 * 18 16 15 35 35 H 1.09001 * 109.50322 * 59.25399 * 18 16 15 36 36 H 1.08996 * 109.52214 * 62.24500 * 19 18 16 37 37 H 1.09000 * 109.52092 * 182.44451 * 19 18 16 38 38 H 1.09002 * 109.50202 * 177.60055 * 20 19 18 39 39 H 1.09008 * 109.50336 * 297.71260 * 20 19 18 40 40 H 1.09000 * 109.46601 * 60.83443 * 21 20 19 41 41 H 1.08999 * 109.46399 * 180.80406 * 21 20 19 42 42 H 1.00899 * 110.99887 * 302.33826 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6092 1.9802 0.8447 5 6 1.6353 2.1184 -1.2847 6 1 2.2522 2.0175 -2.1655 7 6 0.4747 2.8608 -1.3373 8 7 -0.2207 3.0726 -0.2413 9 14 -0.1101 3.5659 -2.9653 10 1 -1.0004 2.5859 -3.6378 11 1 -0.8568 4.8257 -2.7194 12 1 1.0620 3.8464 -3.8328 13 7 3.5045 1.4442 0.1140 14 6 4.1145 0.6067 -0.9274 15 6 3.9288 1.0124 1.4524 16 6 3.5960 2.1050 2.4703 17 1 2.5172 2.2586 2.4986 18 6 4.0868 1.6782 3.8556 19 6 3.7695 2.7832 4.8670 20 6 4.4305 4.0868 4.4108 21 6 3.9298 4.4439 3.0095 22 7 4.2580 3.3561 2.0791 23 1 -0.3634 0.4661 -0.9159 24 1 -0.3633 -1.0262 0.0543 25 1 -0.3633 0.5601 0.8615 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 -1.0374 3.5946 -0.2783 29 1 3.8586 1.0043 -1.9095 30 1 5.1977 0.6076 -0.8060 31 1 3.7398 -0.4130 -0.8393 32 1 3.4060 0.0944 1.7208 33 1 5.0038 0.8314 1.4521 34 1 3.5837 0.7580 4.1522 35 1 5.1635 1.5113 3.8247 36 1 2.6903 2.9235 4.9266 37 1 4.1561 2.5022 5.8466 38 1 4.1731 4.8874 5.1042 39 1 5.5127 3.9578 4.3886 40 1 2.8494 4.5863 3.0352 41 1 4.4094 5.3641 2.6759 42 1 5.2565 3.2300 2.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300056554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = -6.850139 kcal Electronic energy + Delta-G solvation = -18797.763102 eV Core-core repulsion = 16198.077895 eV Total energy + Delta-G solvation = -2599.685208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.80107 -36.84162 -33.00233 -31.43032 -31.12408 -30.55455 -26.61432 -26.25626 -23.83230 -23.04627 -22.10868 -21.02285 -20.01963 -18.55112 -16.23604 -15.31935 -14.93222 -14.58688 -14.42044 -13.96048 -13.90153 -13.64818 -13.26389 -12.77224 -12.49537 -12.15710 -11.88146 -11.65577 -11.39583 -11.27586 -10.88843 -10.79310 -10.75177 -10.71828 -10.53460 -10.29676 -10.22236 -10.19898 -10.01922 -9.64899 -9.16797 -8.74566 -8.26154 -7.61053 -6.81171 -5.88151 -3.86501 3.38156 3.45299 3.49429 4.52848 4.72209 4.90034 5.05323 5.21951 5.23721 5.42399 5.62173 5.67497 5.74008 5.85473 5.97094 6.07482 6.10922 6.17506 6.21331 6.25220 6.28705 6.33176 6.43735 6.45896 6.48929 6.52622 6.70638 6.74978 6.84399 7.02439 7.27791 7.38370 7.64144 7.67874 7.75306 7.98781 8.04900 8.28388 8.60672 8.81905 9.19416 9.74220 11.20689 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007831 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.567484 B = 3574.703074 C = 3959.764698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 C 0.204 3.796 4 H 0.074 0.926 5 C -0.486 4.486 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.512 5.512 14 C 0.033 3.967 15 C 0.060 3.940 16 C 0.098 3.902 17 H 0.087 0.913 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.158 4.158 21 C 0.059 3.941 22 N -0.648 5.648 23 H 0.063 0.937 24 H 0.011 0.989 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.010 0.990 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -1.977 7.790 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.183 4.183 3 C 0.097 3.903 4 H 0.092 0.908 5 C -0.525 4.525 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.714 3.286 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.116 4.116 15 C -0.070 4.070 16 C -0.013 4.013 17 H 0.105 0.895 18 C -0.193 4.193 19 C -0.155 4.155 20 C -0.197 4.197 21 C -0.071 4.071 22 N -0.275 5.275 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.058 -1.204 7.295 10.221 hybrid contribution -0.146 -0.761 0.127 0.785 sum 6.912 -1.965 7.421 10.330 Atomic orbital electron populations 1.21410 0.95948 0.96868 1.03334 1.22263 0.96841 1.01817 0.97361 1.19606 0.80970 0.90099 0.99576 0.90825 1.20941 1.05855 1.30094 0.95571 0.92841 1.24840 0.97159 0.95542 0.95812 1.69930 1.16284 1.40376 1.26267 0.86707 0.78749 0.78427 0.84736 1.21029 1.21474 1.20025 1.62487 1.11746 1.49878 0.99299 1.22245 0.96867 0.94712 0.97792 1.22065 0.98405 0.94687 0.91798 1.21568 1.00030 0.89543 0.90131 0.89534 1.22311 1.00820 0.98541 0.97626 1.21520 1.00905 0.95135 0.97908 1.22315 0.99969 0.97657 0.99784 1.22012 1.01626 0.94872 0.88639 1.60390 1.13334 1.05013 1.48775 0.91831 0.96975 0.93044 0.94130 0.96220 0.93296 0.91316 0.94322 0.97118 0.95486 0.93132 0.91955 0.92587 0.91845 0.92786 0.92186 0.92609 0.90877 0.91383 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.88 37.16 0.33 -2.36 16 2 C -0.14 -3.24 4.57 -26.73 -0.12 -3.36 16 3 C 0.20 4.98 1.85 -68.86 -0.13 4.86 16 4 H 0.07 2.03 5.50 -51.93 -0.29 1.74 16 5 C -0.49 -13.20 7.61 -34.44 -0.26 -13.46 16 6 H 0.05 1.48 6.38 -52.48 -0.33 1.14 16 7 C 0.07 1.86 4.27 -17.82 -0.08 1.79 16 8 N -0.89 -25.05 12.06 55.43 0.67 -24.38 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.51 -11.06 4.45 -236.29 -1.05 -12.11 16 14 C 0.03 0.64 8.83 60.06 0.53 1.17 16 15 C 0.06 1.09 4.49 -3.83 -0.02 1.07 16 16 C 0.10 1.69 2.38 -67.72 -0.16 1.53 16 17 H 0.09 1.80 6.65 -51.93 -0.35 1.46 16 18 C -0.15 -2.12 5.36 -26.65 -0.14 -2.27 16 19 C -0.12 -1.50 6.00 -26.61 -0.16 -1.66 16 20 C -0.16 -1.96 6.08 -26.65 -0.16 -2.12 16 21 C 0.06 0.89 6.55 -3.83 -0.03 0.86 16 22 N -0.65 -11.12 6.29 -106.76 -0.67 -11.79 16 23 H 0.06 1.59 6.63 -51.93 -0.34 1.25 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 1.23 8.13 -51.93 -0.42 0.80 16 26 H 0.04 0.91 6.59 -51.93 -0.34 0.57 16 27 H 0.02 0.41 6.34 -51.93 -0.33 0.08 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.45 6.52 -51.93 -0.34 1.11 16 30 H 0.04 0.67 7.98 -51.93 -0.41 0.25 16 31 H 0.01 0.20 6.24 -51.93 -0.32 -0.12 16 32 H 0.03 0.50 6.20 -51.93 -0.32 0.18 16 33 H 0.05 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.33 5.13 8.79 -39.29 -0.35 4.78 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -27.77 311.98 -9.27 -37.04 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.50 Total: 3.94 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.40 Total: -13.95 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.05 Total: -48.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.77 -9.27 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.188 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds