Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46870 * 2 1 4 4 H 1.08994 * 109.47046 * 55.28102 * 3 2 1 5 5 C 1.50697 * 109.46954 * 295.27829 * 3 2 1 6 6 H 1.08003 * 119.99947 * 274.51734 * 5 3 2 7 7 C 1.37874 * 119.99975 * 94.24831 * 5 3 2 8 8 N 1.31520 * 120.00234 * 5.68460 * 7 5 3 9 9 Si 1.86803 * 120.00272 * 185.68757 * 7 5 3 10 10 H 1.48499 * 109.46816 * 89.99545 * 9 7 5 11 11 H 1.48500 * 109.47053 * 209.99655 * 9 7 5 12 12 H 1.48492 * 109.46819 * 330.00050 * 9 7 5 13 13 N 1.46903 * 109.46880 * 175.27851 * 3 2 1 14 14 C 1.46900 * 111.00018 * 53.90721 * 13 3 2 15 15 C 1.46898 * 111.00074 * 289.94924 * 13 3 2 16 16 C 1.52994 * 109.47486 * 288.82289 * 15 13 3 17 17 H 1.09001 * 109.46485 * 62.18984 * 16 15 13 18 18 C 1.53036 * 109.46702 * 182.17086 * 16 15 13 19 19 C 1.53120 * 109.28093 * 179.19718 * 18 16 15 20 20 C 1.53119 * 109.15685 * 302.34536 * 19 18 16 21 21 C 1.53034 * 109.28168 * 57.65707 * 20 19 18 22 22 N 1.46851 * 109.46222 * 302.22432 * 16 15 13 23 23 H 1.09004 * 109.47212 * 63.03001 * 1 2 3 24 24 H 1.08997 * 109.47115 * 183.02675 * 1 2 3 25 25 H 1.08993 * 109.47190 * 303.02779 * 1 2 3 26 26 H 1.09000 * 109.47653 * 239.99924 * 2 1 3 27 27 H 1.08996 * 109.47226 * 120.00003 * 2 1 3 28 28 H 0.96998 * 120.00425 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47273 * 61.27181 * 14 13 3 30 30 H 1.09001 * 109.46847 * 181.27278 * 14 13 3 31 31 H 1.08999 * 109.46809 * 301.27179 * 14 13 3 32 32 H 1.08999 * 109.47116 * 48.82549 * 15 13 3 33 33 H 1.09005 * 109.47210 * 168.82028 * 15 13 3 34 34 H 1.08996 * 109.50001 * 299.13640 * 18 16 15 35 35 H 1.09001 * 109.50322 * 59.25399 * 18 16 15 36 36 H 1.08996 * 109.52214 * 62.24500 * 19 18 16 37 37 H 1.09000 * 109.52092 * 182.44451 * 19 18 16 38 38 H 1.09002 * 109.50202 * 177.60055 * 20 19 18 39 39 H 1.09008 * 109.50336 * 297.71260 * 20 19 18 40 40 H 1.09000 * 109.46601 * 60.83443 * 21 20 19 41 41 H 1.08999 * 109.46399 * 180.80406 * 21 20 19 42 42 H 1.00899 * 110.99887 * 302.33826 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6092 1.9802 0.8447 5 6 1.6353 2.1184 -1.2847 6 1 2.2522 2.0175 -2.1655 7 6 0.4747 2.8608 -1.3373 8 7 -0.2207 3.0726 -0.2413 9 14 -0.1101 3.5659 -2.9653 10 1 -1.0004 2.5859 -3.6378 11 1 -0.8568 4.8257 -2.7194 12 1 1.0620 3.8464 -3.8328 13 7 3.5045 1.4442 0.1140 14 6 4.1145 0.6067 -0.9274 15 6 3.9288 1.0124 1.4524 16 6 3.5960 2.1050 2.4703 17 1 2.5172 2.2586 2.4986 18 6 4.0868 1.6782 3.8556 19 6 3.7695 2.7832 4.8670 20 6 4.4305 4.0868 4.4108 21 6 3.9298 4.4439 3.0095 22 7 4.2580 3.3561 2.0791 23 1 -0.3634 0.4661 -0.9159 24 1 -0.3633 -1.0262 0.0543 25 1 -0.3633 0.5601 0.8615 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8899 28 1 -1.0374 3.5946 -0.2783 29 1 3.8586 1.0043 -1.9095 30 1 5.1977 0.6076 -0.8060 31 1 3.7398 -0.4130 -0.8393 32 1 3.4060 0.0944 1.7208 33 1 5.0038 0.8314 1.4521 34 1 3.5837 0.7580 4.1522 35 1 5.1635 1.5113 3.8247 36 1 2.6903 2.9235 4.9266 37 1 4.1561 2.5022 5.8466 38 1 4.1731 4.8874 5.1042 39 1 5.5127 3.9578 4.3886 40 1 2.8494 4.5863 3.0352 41 1 4.4094 5.3641 2.6759 42 1 5.2565 3.2300 2.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300056554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = -25.108826 kcal Electronic energy + Delta-G solvation = -18798.554859 eV Core-core repulsion = 16198.077895 eV Total energy + Delta-G solvation = -2600.476964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15612 -38.45115 -34.85351 -33.04259 -32.43790 -32.11574 -28.51102 -27.73827 -25.64359 -24.42626 -23.63204 -22.51340 -21.20110 -20.33858 -18.26031 -16.87738 -16.34299 -16.10129 -15.96653 -15.53934 -15.24416 -15.06535 -14.93661 -14.44754 -13.96419 -13.71538 -13.48345 -13.10375 -12.84343 -12.77180 -12.65700 -12.58814 -12.39421 -12.16542 -12.08787 -11.91760 -11.87942 -11.65419 -11.49451 -11.21274 -11.01285 -10.74831 -10.35797 -8.86541 -8.50264 -7.98213 -6.02248 1.42472 1.44724 1.53300 2.50213 3.23121 3.46274 3.64726 3.94818 4.04786 4.11395 4.24951 4.43171 4.49501 4.53418 4.57292 4.62381 4.70275 4.80142 4.83574 4.85642 4.91333 4.94576 4.98995 5.13635 5.16089 5.17832 5.21112 5.23960 5.28723 5.37302 5.44845 5.53937 5.75446 5.82128 5.86681 6.29484 6.42640 6.82231 6.84542 7.01042 7.09665 7.61396 9.09053 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.007831 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.567484 B = 3574.703074 C = 3959.764698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.498 4.498 6 H 0.044 0.956 7 C 0.026 3.974 8 N -0.913 5.913 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.530 5.530 14 C 0.036 3.964 15 C 0.063 3.937 16 C 0.104 3.896 17 H 0.040 0.960 18 C -0.144 4.144 19 C -0.117 4.117 20 C -0.147 4.147 21 C 0.059 3.941 22 N -0.671 5.671 23 H 0.037 0.963 24 H 0.042 0.958 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.255 0.745 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.016 0.984 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 -2.697 8.425 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.106 3.894 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.063 0.937 7 C -0.173 4.173 8 N -0.553 5.553 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.252 5.252 14 C -0.112 4.112 15 C -0.066 4.066 16 C -0.006 4.006 17 H 0.058 0.942 18 C -0.183 4.183 19 C -0.155 4.155 20 C -0.186 4.186 21 C -0.071 4.071 22 N -0.300 5.300 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.792 -1.931 7.930 11.996 hybrid contribution -0.645 -0.533 -0.071 0.840 sum 8.146 -2.464 7.860 11.585 Atomic orbital electron populations 1.21286 0.96222 0.98079 1.01038 1.22131 0.96513 1.00779 0.98142 1.19273 0.82864 0.90418 0.96827 0.94427 1.21214 1.05822 1.30289 0.96398 0.93750 1.25444 0.97409 0.96125 0.98350 1.70058 1.16481 1.41056 1.27722 0.85872 0.78235 0.77782 0.81581 1.20326 1.21477 1.19926 1.62302 1.10020 1.51357 1.01503 1.22219 0.98435 0.94333 0.96205 1.22125 0.99696 0.94731 0.90056 1.21357 0.97453 0.89673 0.92147 0.94213 1.22201 1.01818 0.98909 0.95421 1.21537 1.00072 0.95055 0.98817 1.22198 1.00721 0.97843 0.97828 1.21960 0.99846 0.94781 0.90471 1.60287 1.14067 1.05360 1.50319 0.94407 0.93934 0.94945 0.93823 0.94597 0.93568 0.93336 0.91459 0.96575 0.95690 0.90547 0.91671 0.90574 0.93589 0.90311 0.90753 0.90863 0.94055 0.90503 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 8.88 71.98 0.64 -4.33 16 2 C -0.14 -6.11 4.57 30.60 0.14 -5.97 16 3 C 0.21 10.62 1.85 44.17 0.08 10.70 16 4 H 0.04 2.16 5.50 -2.39 -0.01 2.15 16 5 C -0.50 -27.59 7.61 25.60 0.19 -27.39 16 6 H 0.04 2.49 6.38 -2.91 -0.02 2.47 16 7 C 0.03 1.44 4.27 84.65 0.36 1.80 16 8 N -0.91 -53.05 12.06 21.45 0.26 -52.79 16 9 Si 0.94 44.91 29.54 68.60 2.03 46.93 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.53 -22.66 4.45 -901.47 -4.01 -26.68 16 14 C 0.04 1.39 8.83 127.69 1.13 2.52 16 15 C 0.06 2.20 4.49 86.30 0.39 2.59 16 16 C 0.10 3.60 2.38 44.93 0.11 3.70 16 17 H 0.04 1.74 6.65 -2.39 -0.02 1.73 16 18 C -0.14 -3.71 5.36 30.65 0.16 -3.54 16 19 C -0.12 -2.78 6.00 30.67 0.18 -2.60 16 20 C -0.15 -3.33 6.08 30.65 0.19 -3.14 16 21 C 0.06 1.78 6.55 86.32 0.57 2.34 16 22 N -0.67 -22.76 6.29 -491.68 -3.09 -25.85 16 23 H 0.04 1.90 6.63 -2.38 -0.02 1.88 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.04 1.92 6.59 -2.39 -0.02 1.90 16 27 H 0.04 1.48 6.34 -2.39 -0.02 1.46 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.05 2.02 6.52 -2.39 -0.02 2.00 16 30 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 31 H 0.02 0.59 6.24 -2.39 -0.01 0.57 16 32 H 0.03 0.89 6.20 -2.39 -0.01 0.88 16 33 H 0.08 2.29 7.90 -2.38 -0.02 2.27 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.34 10.00 8.79 -89.69 -0.79 9.21 16 Total: -1.00 -60.83 311.98 -0.49 -61.32 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.19 Total: 20.40 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.14 Total: -23.33 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -6.85 Total: -105.32 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -60.83 -0.49 -61.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.211 kcal (2) G-P(sol) polarization free energy of solvation -60.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds