Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46777 * 305.71424 * 3 2 1 5 5 C 1.50698 * 109.47378 * 185.70767 * 3 2 1 6 6 H 1.07994 * 120.00162 * 246.39006 * 5 3 2 7 7 C 1.37880 * 119.99436 * 66.38014 * 5 3 2 8 8 N 1.31515 * 119.99832 * 203.24204 * 7 5 3 9 9 Si 1.86801 * 120.00015 * 23.25048 * 7 5 3 10 10 H 1.48498 * 109.47044 * 95.15759 * 9 7 5 11 11 H 1.48504 * 109.46775 * 215.15142 * 9 7 5 12 12 H 1.48499 * 109.47255 * 335.15430 * 9 7 5 13 13 N 1.46902 * 109.47185 * 65.70927 * 3 2 1 14 14 C 1.46898 * 111.00183 * 43.82574 * 13 3 2 15 15 C 1.46903 * 110.99764 * 279.86957 * 13 3 2 16 16 C 1.53004 * 109.47317 * 218.38413 * 15 13 3 17 17 H 1.09000 * 109.50049 * 55.28603 * 16 15 13 18 18 C 1.53115 * 109.50424 * 175.36387 * 16 15 13 19 19 C 1.53119 * 109.21377 * 177.56383 * 18 16 15 20 20 C 1.53048 * 109.27493 * 302.44373 * 19 18 16 21 21 N 1.46850 * 109.57389 * 59.08330 * 20 19 18 22 22 C 1.46848 * 111.19565 * 298.28512 * 21 20 19 23 23 H 1.09006 * 109.46870 * 293.50918 * 1 2 3 24 24 H 1.08991 * 109.47128 * 53.50919 * 1 2 3 25 25 H 1.09007 * 109.47119 * 173.51383 * 1 2 3 26 26 H 1.08994 * 109.46731 * 239.99385 * 2 1 3 27 27 H 1.09002 * 109.46742 * 119.99829 * 2 1 3 28 28 H 0.97002 * 120.00085 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47084 * 295.20778 * 14 13 3 30 30 H 1.08994 * 109.47066 * 55.20677 * 14 13 3 31 31 H 1.08997 * 109.47337 * 175.20941 * 14 13 3 32 32 H 1.09001 * 109.47135 * 98.38650 * 15 13 3 33 33 H 1.08995 * 109.47493 * 338.38760 * 15 13 3 34 34 H 1.08996 * 109.52686 * 297.50309 * 18 16 15 35 35 H 1.09004 * 109.52171 * 57.63379 * 18 16 15 36 36 H 1.09002 * 109.50178 * 62.31914 * 19 18 16 37 37 H 1.08997 * 109.50694 * 182.43589 * 19 18 16 38 38 H 1.08999 * 109.40679 * 299.06765 * 20 19 18 39 39 H 1.08994 * 109.46199 * 179.12733 * 20 19 18 40 40 H 1.00898 * 111.00280 * 62.39082 * 21 20 19 41 41 H 1.08994 * 109.46702 * 301.72714 * 22 21 20 42 42 H 1.08996 * 109.46002 * 181.75976 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9849 -0.8344 5 6 3.5404 1.4449 -0.1413 6 1 4.1589 1.7917 0.6732 7 6 4.1233 1.0040 -1.3105 8 7 5.3652 0.5713 -1.3036 9 14 3.1492 1.0216 -2.9043 10 1 3.4425 2.2720 -3.6499 11 1 3.5333 -0.1499 -3.7321 12 1 1.6976 0.9569 -2.5980 13 7 1.6661 2.0941 1.2624 14 6 1.9093 1.2048 2.4061 15 6 0.2668 2.5399 1.2303 16 6 0.1455 3.8909 1.9382 17 1 0.8345 4.6029 1.4838 18 6 -1.2885 4.4109 1.8050 19 6 -1.4179 5.7328 2.5669 20 6 -1.0300 5.5122 4.0308 21 7 0.3501 5.0156 4.1046 22 6 0.4866 3.7234 3.4207 23 1 -0.3633 0.4100 0.9424 24 1 -0.3633 0.6111 -0.8261 25 1 -0.3634 -1.0211 -0.1161 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.7755 0.2615 -2.1262 29 1 1.2546 0.3361 2.3366 30 1 2.9490 0.8778 2.3973 31 1 1.7048 1.7407 3.3329 32 1 -0.3600 1.8064 1.7376 33 1 -0.0586 2.6416 0.1951 34 1 -1.5210 4.5728 0.7525 35 1 -1.9812 3.6804 2.2229 36 1 -0.7541 6.4750 2.1233 37 1 -2.4477 6.0855 2.5114 38 1 -1.7035 4.7810 4.4778 39 1 -1.1061 6.4549 4.5727 40 1 0.9985 5.6926 3.7315 41 1 -0.1940 3.0006 3.8705 42 1 1.5118 3.3668 3.5194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300056635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = 1.837064 kcal Electronic energy + Delta-G solvation = -18647.768702 eV Core-core repulsion = 16048.460200 eV Total energy + Delta-G solvation = -2599.308503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.22260 -37.42681 -33.13460 -31.97963 -31.50038 -30.30155 -27.71676 -26.68199 -23.81099 -23.21729 -22.46665 -20.95003 -19.93291 -19.11623 -16.72436 -16.08924 -15.28769 -15.16833 -14.62006 -14.36761 -13.95986 -13.74753 -13.56114 -12.79325 -12.63517 -12.19777 -12.13155 -12.06753 -11.79800 -11.44191 -11.31125 -11.19760 -11.08332 -10.85142 -10.78343 -10.67448 -10.42415 -10.35526 -9.86262 -9.75613 -9.57326 -9.26448 -8.26606 -8.19155 -7.21276 -6.11132 -3.96918 3.28391 3.38328 3.41145 4.41486 4.44492 4.67505 4.90058 4.98494 5.14939 5.17614 5.20713 5.51883 5.53416 5.63467 5.67255 5.77521 5.85218 5.93815 5.95591 6.00176 6.03461 6.05469 6.13339 6.15014 6.24289 6.35195 6.47610 6.54600 6.57696 6.65420 6.76397 6.85311 6.99041 7.15167 7.28648 7.47497 7.71283 8.01645 8.17280 8.69855 9.07480 9.59504 11.02010 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.006394 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.371124 B = 4378.330485 C = 4452.265031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C 0.191 3.809 4 H 0.032 0.968 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.885 5.885 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.521 5.521 14 C 0.024 3.976 15 C 0.058 3.942 16 C -0.117 4.117 17 H 0.076 0.924 18 C -0.115 4.115 19 C -0.156 4.156 20 C 0.057 3.943 21 N -0.689 5.689 22 C 0.061 3.939 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.340 0.660 41 H 0.062 0.938 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 5.933 6.964 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C 0.083 3.917 4 H 0.049 0.951 5 C -0.545 4.545 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.522 5.522 9 Si 0.681 3.319 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.185 1.185 13 N -0.243 5.243 14 C -0.125 4.125 15 C -0.071 4.071 16 C -0.138 4.138 17 H 0.094 0.906 18 C -0.154 4.154 19 C -0.195 4.195 20 C -0.073 4.073 21 N -0.317 5.317 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.040 5.982 7.560 16.217 hybrid contribution -1.043 -0.525 -2.256 2.540 sum -14.083 5.457 5.304 16.008 Atomic orbital electron populations 1.22208 0.98703 1.00104 1.01027 1.22538 0.92695 1.02174 1.01808 1.19821 0.96836 0.88110 0.86891 0.95055 1.20828 0.89005 1.42881 1.01768 0.90328 1.24828 0.94720 0.94094 0.98749 1.70061 1.14507 1.40064 1.27524 0.87187 0.81880 0.77737 0.85050 1.20615 1.21479 1.18540 1.62096 1.17498 1.40508 1.04245 1.22569 1.02152 0.94495 0.93241 1.22332 0.90920 0.94554 0.99306 1.21895 0.95657 0.98569 0.97647 0.90592 1.21598 0.97282 0.96471 1.00002 1.22247 1.01539 0.97964 0.97766 1.21997 0.90759 1.00077 0.94516 1.60740 1.05414 1.06069 1.59458 1.22276 1.02912 0.90756 0.90844 0.92701 0.93684 0.94315 0.92764 0.91964 0.92784 0.96305 0.90733 0.92699 0.94474 0.92260 0.92235 0.92360 0.92078 0.91996 0.91380 0.91311 0.84242 0.91986 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.51 37.16 0.32 -2.57 16 2 C -0.15 -3.26 4.44 -26.73 -0.12 -3.38 16 3 C 0.19 4.40 1.44 -68.87 -0.10 4.30 16 4 H 0.03 0.76 5.66 -51.93 -0.29 0.47 16 5 C -0.51 -13.95 8.50 -34.44 -0.29 -14.24 16 6 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 7 C 0.08 2.23 5.21 -17.82 -0.09 2.14 16 8 N -0.88 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.85 21.08 26.13 -169.99 -4.44 16.64 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.14 6.06 56.52 0.34 -5.79 16 13 N -0.52 -10.29 4.30 -236.29 -1.02 -11.30 16 14 C 0.02 0.43 7.74 60.06 0.47 0.89 16 15 C 0.06 0.96 3.11 -3.82 -0.01 0.94 16 16 C -0.12 -1.66 2.55 -90.54 -0.23 -1.89 16 17 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.12 -1.38 5.28 -26.61 -0.14 -1.53 16 19 C -0.16 -1.62 6.08 -26.64 -0.16 -1.78 16 20 C 0.06 0.59 6.55 -3.83 -0.03 0.57 16 21 N -0.69 -8.48 6.87 -113.81 -0.78 -9.27 16 22 C 0.06 0.83 4.74 -3.83 -0.02 0.81 16 23 H 0.05 0.89 4.31 -51.93 -0.22 0.67 16 24 H 0.04 0.79 7.92 -51.93 -0.41 0.38 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.24 6.06 -51.93 -0.31 0.93 16 27 H 0.06 1.32 6.07 -51.93 -0.32 1.01 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.33 5.52 -51.93 -0.29 0.04 16 30 H 0.07 1.53 7.39 -51.93 -0.38 1.14 16 31 H 0.05 0.87 5.09 -51.93 -0.26 0.60 16 32 H 0.04 0.58 5.65 -51.93 -0.29 0.29 16 33 H 0.06 1.03 6.77 -51.93 -0.35 0.67 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.34 4.03 8.86 -39.29 -0.35 3.69 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.41 5.74 -51.93 -0.30 1.11 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -28.52 300.16 -8.55 -37.07 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.20 Total: 3.86 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.41 Total: -15.72 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.02 Total: -46.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.44 Total: 16.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.52 -8.55 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.905 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds