Wall clock time and date at job start Mon Mar 30 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46777 * 305.71424 * 3 2 1 5 5 C 1.50698 * 109.47378 * 185.70767 * 3 2 1 6 6 H 1.07994 * 120.00162 * 246.39006 * 5 3 2 7 7 C 1.37880 * 119.99436 * 66.38014 * 5 3 2 8 8 N 1.31515 * 119.99832 * 203.24204 * 7 5 3 9 9 Si 1.86801 * 120.00015 * 23.25048 * 7 5 3 10 10 H 1.48498 * 109.47044 * 95.15759 * 9 7 5 11 11 H 1.48504 * 109.46775 * 215.15142 * 9 7 5 12 12 H 1.48499 * 109.47255 * 335.15430 * 9 7 5 13 13 N 1.46902 * 109.47185 * 65.70927 * 3 2 1 14 14 C 1.46898 * 111.00183 * 43.82574 * 13 3 2 15 15 C 1.46903 * 110.99764 * 279.86957 * 13 3 2 16 16 C 1.53004 * 109.47317 * 218.38413 * 15 13 3 17 17 H 1.09000 * 109.50049 * 55.28603 * 16 15 13 18 18 C 1.53115 * 109.50424 * 175.36387 * 16 15 13 19 19 C 1.53119 * 109.21377 * 177.56383 * 18 16 15 20 20 C 1.53048 * 109.27493 * 302.44373 * 19 18 16 21 21 N 1.46850 * 109.57389 * 59.08330 * 20 19 18 22 22 C 1.46848 * 111.19565 * 298.28512 * 21 20 19 23 23 H 1.09006 * 109.46870 * 293.50918 * 1 2 3 24 24 H 1.08991 * 109.47128 * 53.50919 * 1 2 3 25 25 H 1.09007 * 109.47119 * 173.51383 * 1 2 3 26 26 H 1.08994 * 109.46731 * 239.99385 * 2 1 3 27 27 H 1.09002 * 109.46742 * 119.99829 * 2 1 3 28 28 H 0.97002 * 120.00085 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47084 * 295.20778 * 14 13 3 30 30 H 1.08994 * 109.47066 * 55.20677 * 14 13 3 31 31 H 1.08997 * 109.47337 * 175.20941 * 14 13 3 32 32 H 1.09001 * 109.47135 * 98.38650 * 15 13 3 33 33 H 1.08995 * 109.47493 * 338.38760 * 15 13 3 34 34 H 1.08996 * 109.52686 * 297.50309 * 18 16 15 35 35 H 1.09004 * 109.52171 * 57.63379 * 18 16 15 36 36 H 1.09002 * 109.50178 * 62.31914 * 19 18 16 37 37 H 1.08997 * 109.50694 * 182.43589 * 19 18 16 38 38 H 1.08999 * 109.40679 * 299.06765 * 20 19 18 39 39 H 1.08994 * 109.46199 * 179.12733 * 20 19 18 40 40 H 1.00898 * 111.00280 * 62.39082 * 21 20 19 41 41 H 1.08994 * 109.46702 * 301.72714 * 22 21 20 42 42 H 1.08996 * 109.46002 * 181.75976 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9849 -0.8344 5 6 3.5404 1.4449 -0.1413 6 1 4.1589 1.7917 0.6732 7 6 4.1233 1.0040 -1.3105 8 7 5.3652 0.5713 -1.3036 9 14 3.1492 1.0216 -2.9043 10 1 3.4425 2.2720 -3.6499 11 1 3.5333 -0.1499 -3.7321 12 1 1.6976 0.9569 -2.5980 13 7 1.6661 2.0941 1.2624 14 6 1.9093 1.2048 2.4061 15 6 0.2668 2.5399 1.2303 16 6 0.1455 3.8909 1.9382 17 1 0.8345 4.6029 1.4838 18 6 -1.2885 4.4109 1.8050 19 6 -1.4179 5.7328 2.5669 20 6 -1.0300 5.5122 4.0308 21 7 0.3501 5.0156 4.1046 22 6 0.4866 3.7234 3.4207 23 1 -0.3633 0.4100 0.9424 24 1 -0.3633 0.6111 -0.8261 25 1 -0.3634 -1.0211 -0.1161 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.7755 0.2615 -2.1262 29 1 1.2546 0.3361 2.3366 30 1 2.9490 0.8778 2.3973 31 1 1.7048 1.7407 3.3329 32 1 -0.3600 1.8064 1.7376 33 1 -0.0586 2.6416 0.1951 34 1 -1.5210 4.5728 0.7525 35 1 -1.9812 3.6804 2.2229 36 1 -0.7541 6.4750 2.1233 37 1 -2.4477 6.0855 2.5114 38 1 -1.7035 4.7810 4.4778 39 1 -1.1061 6.4549 4.5727 40 1 0.9985 5.6926 3.7315 41 1 -0.1940 3.0006 3.8705 42 1 1.5118 3.3668 3.5194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300056635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:29 Heat of formation + Delta-G solvation = -18.769373 kcal Electronic energy + Delta-G solvation = -18648.662264 eV Core-core repulsion = 16048.460200 eV Total energy + Delta-G solvation = -2600.202065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45086 -38.80807 -34.88835 -33.60054 -32.64268 -31.56254 -29.53739 -28.03487 -25.34450 -24.37526 -23.89579 -22.12034 -21.03513 -20.83367 -18.77488 -17.38897 -16.65265 -16.48324 -16.08209 -15.57947 -15.41184 -15.16159 -14.77407 -14.51800 -13.92788 -13.83151 -13.57167 -13.23389 -13.06940 -12.89837 -12.87640 -12.62775 -12.46210 -12.28197 -12.12292 -11.99639 -11.83080 -11.59807 -11.56981 -11.38709 -11.28741 -10.93483 -10.38671 -9.20985 -8.75422 -8.30682 -6.19911 1.31089 1.36370 1.44787 2.35924 3.01869 3.28719 3.49466 3.89298 4.01202 4.06489 4.20022 4.27623 4.35091 4.42568 4.48968 4.54490 4.62508 4.64278 4.72332 4.74292 4.80700 4.89497 4.93221 5.05350 5.10736 5.13063 5.15707 5.17421 5.21026 5.27786 5.31428 5.39088 5.52254 5.58594 5.70082 6.12533 6.19322 6.51790 6.54306 6.80099 6.82927 7.39973 8.86507 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.006394 C = 0.006287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.371124 B = 4378.330485 C = 4452.265031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C 0.196 3.804 4 H 0.026 0.974 5 C -0.510 4.510 6 H 0.033 0.967 7 C 0.024 3.976 8 N -0.934 5.934 9 Si 0.920 3.080 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.239 1.239 13 N -0.537 5.537 14 C 0.031 3.969 15 C 0.062 3.938 16 C -0.110 4.110 17 H 0.054 0.946 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.057 3.943 21 N -0.695 5.695 22 C 0.069 3.931 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.264 0.736 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.341 0.659 41 H 0.068 0.932 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.746 6.440 7.107 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.088 3.912 4 H 0.044 0.956 5 C -0.548 4.548 6 H 0.052 0.948 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.163 1.163 13 N -0.259 5.259 14 C -0.117 4.117 15 C -0.067 4.067 16 C -0.131 4.131 17 H 0.072 0.928 18 C -0.150 4.150 19 C -0.189 4.189 20 C -0.073 4.073 21 N -0.323 5.323 22 C -0.061 4.061 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.158 0.842 41 H 0.087 0.913 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.387 6.505 7.718 19.246 hybrid contribution 0.048 -0.639 -2.180 2.272 sum -16.339 5.865 5.539 18.222 Atomic orbital electron populations 1.22102 0.95203 1.01717 1.02034 1.22397 0.95755 1.00246 1.00651 1.19606 0.93644 0.89554 0.88412 0.95593 1.21085 0.91475 1.41792 1.00410 0.94825 1.25614 0.95721 0.93897 1.02200 1.70186 1.16669 1.42050 1.28454 0.86147 0.81479 0.77615 0.80348 1.20390 1.21273 1.16251 1.61975 1.20252 1.40535 1.03162 1.22497 1.00265 0.95093 0.93844 1.22368 0.88767 0.95981 0.99576 1.21806 0.96990 0.96773 0.97557 0.92776 1.21567 0.95420 0.97504 1.00463 1.22203 1.02631 0.96906 0.97207 1.22075 0.89488 1.00865 0.94865 1.60739 1.06736 1.05680 1.59145 1.22103 1.01688 0.91716 0.90563 0.91190 0.93337 0.92270 0.94644 0.92579 0.92699 0.95124 0.94177 0.90195 0.92814 0.92805 0.92238 0.91382 0.92523 0.90058 0.90998 0.89771 0.84157 0.91333 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 8.51 71.98 0.61 -4.31 16 2 C -0.15 -6.27 4.44 30.59 0.14 -6.14 16 3 C 0.20 9.01 1.44 44.17 0.06 9.07 16 4 H 0.03 1.23 5.66 -2.39 -0.01 1.22 16 5 C -0.51 -29.04 8.50 25.60 0.22 -28.83 16 6 H 0.03 2.16 7.84 -2.91 -0.02 2.14 16 7 C 0.02 1.40 5.21 84.66 0.44 1.84 16 8 N -0.93 -58.23 13.96 21.45 0.30 -57.93 16 9 Si 0.92 43.90 26.13 68.60 1.79 45.69 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.24 -10.48 6.06 99.48 0.60 -9.88 16 13 N -0.54 -21.02 4.30 -901.48 -3.88 -24.90 16 14 C 0.03 1.12 7.74 127.69 0.99 2.11 16 15 C 0.06 1.90 3.11 86.30 0.27 2.17 16 16 C -0.11 -2.94 2.55 -10.74 -0.03 -2.97 16 17 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 18 C -0.11 -2.34 5.28 30.67 0.16 -2.18 16 19 C -0.15 -2.65 6.08 30.65 0.19 -2.46 16 20 C 0.06 1.02 6.55 86.33 0.57 1.58 16 21 N -0.70 -15.79 6.87 -513.99 -3.53 -19.32 16 22 C 0.07 1.75 4.74 86.33 0.41 2.16 16 23 H 0.07 2.02 4.31 -2.38 -0.01 2.01 16 24 H 0.05 1.53 7.92 -2.39 -0.02 1.51 16 25 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.03 1.58 6.06 -2.39 -0.01 1.57 16 27 H 0.06 2.36 6.07 -2.39 -0.01 2.35 16 28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.03 1.02 5.52 -2.39 -0.01 1.01 16 30 H 0.04 1.70 7.39 -2.39 -0.02 1.69 16 31 H 0.08 2.47 5.09 -2.39 -0.01 2.46 16 32 H 0.05 1.49 5.65 -2.39 -0.01 1.48 16 33 H 0.05 1.73 6.77 -2.39 -0.02 1.72 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.34 7.66 8.86 -89.70 -0.79 6.86 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.10 5.74 -2.39 -0.01 2.09 16 Total: -1.00 -63.32 300.16 -1.19 -64.51 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.10 Total: 19.89 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 4.02 Total: -27.95 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -7.11 Total: -102.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.79 Total: 45.69 kcal Total: -63.32 -1.19 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300056635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.742 kcal (2) G-P(sol) polarization free energy of solvation -63.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds