Wall clock time and date at job start Mon Mar 30 2020 04:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46950 * 2 1 4 4 N 1.46902 * 109.46712 * 185.57682 * 3 2 1 5 5 C 1.46899 * 111.00422 * 300.97864 * 4 3 2 6 6 C 1.52993 * 109.47411 * 277.46410 * 5 4 3 7 7 H 1.09001 * 110.36622 * 306.00494 * 6 5 4 8 8 C 1.54375 * 110.41617 * 183.65289 * 6 5 4 9 9 C 1.54252 * 105.06273 * 217.36853 * 8 6 5 10 10 C 1.54378 * 105.06260 * 359.97438 * 9 8 6 11 11 N 1.48559 * 110.41151 * 68.47542 * 6 5 4 12 12 C 1.46902 * 110.99982 * 64.93704 * 4 3 2 13 13 H 1.09007 * 109.46762 * 291.81679 * 12 4 3 14 14 C 1.52996 * 109.47261 * 171.81592 * 12 4 3 15 15 C 1.50703 * 109.47188 * 51.81407 * 12 4 3 16 16 H 1.07992 * 119.99828 * 5.96515 * 15 12 4 17 17 C 1.37872 * 119.99932 * 185.96300 * 15 12 4 18 18 N 1.31513 * 120.00257 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00009 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.46892 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46903 * 119.99974 * 19 17 15 22 22 H 1.48500 * 109.47211 * 240.00135 * 19 17 15 23 23 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46999 * 300.00256 * 1 2 3 25 25 H 1.09006 * 109.47494 * 59.99306 * 1 2 3 26 26 H 1.08995 * 109.47109 * 120.00398 * 2 1 3 27 27 H 1.09005 * 109.46489 * 240.00268 * 2 1 3 28 28 H 1.08993 * 109.47572 * 305.58126 * 3 2 1 29 29 H 1.09001 * 109.47225 * 65.58130 * 3 2 1 30 30 H 1.09000 * 109.46633 * 37.46277 * 5 4 3 31 31 H 1.08998 * 109.47372 * 157.46056 * 5 4 3 32 32 H 1.09006 * 110.32147 * 336.26292 * 8 6 5 33 33 H 1.09002 * 110.32512 * 98.46555 * 8 6 5 34 34 H 1.09002 * 110.32630 * 118.89474 * 9 8 6 35 35 H 1.09008 * 110.32169 * 241.00172 * 9 8 6 36 36 H 1.09003 * 110.41202 * 142.63371 * 10 9 8 37 37 H 1.08998 * 110.41336 * 265.07868 * 10 9 8 38 38 H 1.00897 * 111.00436 * 277.82014 * 11 6 5 39 39 H 1.09003 * 109.46916 * 60.00093 * 14 12 4 40 40 H 1.09002 * 109.47114 * 179.97438 * 14 12 4 41 41 H 1.08994 * 109.47284 * 299.99973 * 14 12 4 42 42 H 0.97007 * 120.00350 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5028 1.4446 -0.1346 5 6 4.1338 0.7018 0.9645 6 6 4.2532 1.6089 2.1907 7 1 4.7701 2.5326 1.9304 8 6 4.9962 0.8790 3.3302 9 6 4.2880 1.3302 4.6241 10 6 3.1770 2.2953 4.1577 11 7 2.9088 1.9045 2.7494 12 6 3.9123 0.9050 -1.4381 13 1 3.6828 -0.1599 -1.4788 14 6 5.4169 1.1099 -1.6250 15 6 3.1677 1.6216 -2.5349 16 1 2.5344 2.4633 -2.2968 17 6 3.2949 1.2027 -3.8422 18 7 4.0658 0.1773 -4.1321 19 14 2.3725 2.0914 -5.2019 20 1 1.5801 3.2032 -4.6176 21 1 3.3436 2.6387 -6.1831 22 1 1.4609 1.1393 -5.8859 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.5974 1.9844 -0.8357 29 1 1.7605 1.9267 0.9357 30 1 3.5239 -0.1668 1.2131 31 1 5.1267 0.3728 0.6578 32 1 4.9096 -0.2007 3.2080 33 1 6.0449 1.1756 3.3493 34 1 3.8537 0.4721 5.1370 35 1 4.9895 1.8469 5.2792 36 1 2.2811 2.1657 4.7650 37 1 3.5246 3.3273 4.2068 38 1 2.4645 2.6563 2.2441 39 1 5.9555 0.5915 -0.8317 40 1 5.7209 0.7090 -2.5920 41 1 5.6465 2.1746 -1.5843 42 1 4.1551 -0.1177 -5.0519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300057215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:34 Heat of formation + Delta-G solvation = -14.488734 kcal Electronic energy + Delta-G solvation = -18632.753878 eV Core-core repulsion = 16032.737436 eV Total energy + Delta-G solvation = -2600.016442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15887 -38.29718 -35.07801 -33.67927 -31.58219 -31.11553 -29.81073 -27.62171 -26.10062 -24.64163 -22.89498 -21.96888 -21.13841 -20.30168 -18.10728 -17.72264 -17.16599 -16.13314 -16.05799 -15.78310 -15.25327 -14.76433 -14.64900 -14.19353 -13.75394 -13.52609 -13.22298 -13.11862 -12.92957 -12.73860 -12.58990 -12.47715 -12.34272 -12.21122 -12.17803 -12.01630 -11.90195 -11.76405 -11.51319 -11.29965 -10.91870 -10.73505 -10.46967 -9.42429 -8.70084 -8.09397 -6.17862 1.40075 1.42271 1.53374 2.43829 3.21913 3.38888 3.43654 3.96351 3.97537 4.17907 4.26399 4.30816 4.44850 4.48087 4.66307 4.69928 4.73996 4.80311 4.84201 4.95228 4.99710 5.02961 5.05087 5.11893 5.13542 5.21391 5.22506 5.28389 5.32272 5.33949 5.48791 5.61469 5.63575 5.80212 5.84279 6.00275 6.27866 6.43802 6.53905 6.88066 7.01141 7.51005 8.98805 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.006810 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.809096 B = 4110.840708 C = 4577.926460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C 0.070 3.930 4 N -0.538 5.538 5 C 0.059 3.941 6 C 0.082 3.918 7 H 0.041 0.959 8 C -0.120 4.120 9 C -0.117 4.117 10 C 0.032 3.968 11 N -0.667 5.667 12 C 0.217 3.783 13 H -0.031 1.031 14 C -0.117 4.117 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.953 3.047 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.337 0.663 39 H 0.030 0.970 40 H 0.046 0.954 41 H 0.032 0.968 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 2.444 15.172 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C -0.058 4.058 4 N -0.261 5.261 5 C -0.069 4.069 6 C -0.028 4.028 7 H 0.060 0.940 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.097 4.097 11 N -0.298 5.298 12 C 0.110 3.890 13 H -0.013 1.013 14 C -0.175 4.175 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.155 0.845 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.832 2.153 15.158 15.419 hybrid contribution -0.066 0.157 -1.496 1.505 sum -1.898 2.311 13.663 13.986 Atomic orbital electron populations 1.21577 0.94569 1.01357 1.01680 1.21919 0.97244 0.99572 0.99640 1.22176 0.87517 0.95015 1.01116 1.62258 1.07794 1.53718 1.02287 1.22198 0.98454 0.95155 0.91119 1.22357 0.89899 0.97118 0.93429 0.94044 1.22319 0.99223 1.00408 0.93957 1.22259 0.97133 0.99410 0.96683 1.22980 0.99149 0.97206 0.90336 1.63892 1.19059 1.43828 1.03037 1.18984 0.92484 0.91547 0.85995 1.01317 1.21629 0.97525 0.98847 0.99521 1.21423 1.26671 1.14615 0.91818 0.92406 1.25663 0.96386 0.95839 1.00871 1.70065 1.39913 1.27214 1.19262 0.85583 0.78514 0.78683 0.79343 1.19058 1.20807 1.20961 0.92871 0.91292 0.93757 0.92339 0.95546 0.92832 0.89298 0.94544 0.92312 0.91721 0.90664 0.90929 0.90046 0.89602 0.93976 0.84487 0.95123 0.93520 0.94903 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.91 71.98 0.71 -3.50 16 2 C -0.14 -5.53 5.30 30.59 0.16 -5.36 16 3 C 0.07 2.73 4.84 86.30 0.42 3.15 16 4 N -0.54 -22.77 4.46 -875.39 -3.91 -26.68 16 5 C 0.06 2.16 4.43 86.30 0.38 2.54 16 6 C 0.08 2.41 3.39 45.06 0.15 2.56 16 7 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 8 C -0.12 -2.82 6.55 31.49 0.21 -2.61 16 9 C -0.12 -2.21 7.00 31.49 0.22 -1.99 16 10 C 0.03 0.66 7.47 86.44 0.65 1.30 16 11 N -0.67 -17.66 6.08 -478.94 -2.91 -20.58 16 12 C 0.22 11.09 1.45 44.17 0.06 11.16 16 13 H -0.03 -1.77 6.73 -2.38 -0.02 -1.79 16 14 C -0.12 -5.80 8.98 71.98 0.65 -5.16 16 15 C -0.51 -27.96 7.65 25.60 0.20 -27.76 16 16 H 0.06 3.19 6.36 -2.91 -0.02 3.17 16 17 C 0.01 0.59 5.33 84.65 0.45 1.04 16 18 N -0.92 -54.32 11.77 21.45 0.25 -54.07 16 19 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 2.15 6.26 -2.39 -0.01 2.13 16 27 H 0.03 1.21 6.45 -2.38 -0.02 1.20 16 28 H 0.05 2.35 5.93 -2.39 -0.01 2.33 16 29 H 0.09 2.99 4.79 -2.39 -0.01 2.98 16 30 H 0.04 1.37 5.53 -2.39 -0.01 1.36 16 31 H 0.06 2.23 5.70 -2.39 -0.01 2.22 16 32 H 0.06 1.58 7.86 -2.38 -0.02 1.56 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.34 9.15 6.93 -89.70 -0.62 8.53 16 39 H 0.03 1.34 6.15 -2.39 -0.01 1.33 16 40 H 0.05 2.54 6.56 -2.39 -0.02 2.53 16 41 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -60.16 310.43 0.09 -60.07 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.37 Total: 19.49 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 4.26 Total: -24.64 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -6.56 Total: -101.32 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.16 0.09 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.582 kcal (2) G-P(sol) polarization free energy of solvation -60.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds